Eosinophils
Shah A
PH28 / 56 Clinical-Coded Phenotype
Overview
Phenotype TypeBiomarkerPhenotype UUIDPHE00322SexBothValid Event Date Range01/01/1999 - 01/07/2016Coding SystemRead codes v2Data SourcesCollectionsPhenotype LibraryTagsNo dataDefinition
In the Clinical Practice Research Datalink (CPRD, primary care data) we extracted eosinophil measurements using the structured data component of the test CPRD table (entity type 168) combined with a list of Read terms (see below). The value was extracted from the data2 field where the units data3 field were set as 37 [109/L], 153 [109], 17 [/L]. We filtered any values less than 50 10^9/L.
Implementation
Phenoflow IDImplementation
Clinical Code List
PUBLISHED - 16 Codes
Publication
No publications Citation Example
Shah A. PH28 / 56 - Eosinophils. Phenotype Library [Online]. 06 October 2021. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH28/version/56/detail/. [Accessed 07 September 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH28/version/56/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH28',
version_id=56
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH28',
version_id=56
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH28/version/56/export/codes/?format=json CSV site_root/phenotypes/PH28/version/56/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH28',
version_id=56
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH28',
version_id=56
)Version History