Schizophrenia
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.
PH939 / 3519 Clinical-Coded Phenotype
Overview
Phenotype TypeDisease or syndromePhenotype UUIDexcel-ADP-idMS681SexBothValid Event Date RangeNo dataCoding SystemSNOMED CT codesICD10 codesRead codes v2CollectionsAdolescent Data Platform (ADP)DATAMINDPhenotype LibraryTagsNo dataDefinition
Schizophrenia is a long-term, severe mental illness causing a range of different psychological symptoms, such as hallucinations and delusions. It includes schizophrenia, schizotypal and delusional disorders.
ICD-10 and Read code definitions
These definitions include schizophrenia-related disorders such as schizophrenia, schizotypal and delusional disorders. They have been co-developed with expert clinicians and previously published (John et. al. 2018; John et. al. 2022).
SNOWMED CT definition
This definition has been created by mapping the existing Read code and ICD-10 definitions and additional exploration of SNOMED CT codes.
Note: The SNOMED CT definition has not undergone validation yet.
REFERENCES
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162.
John, A., Friedmann, Y., DelPozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. (2022). Association of school absence and exclusion with recorded neurodevelopmental disorders, mental disorders, or self-harm: a nationwide, retrospective, electronic cohort study of children and young people in Wales, UK. The Lancet Psychiatry, 9(1), 23-34.
Implementation
Implementation
Clinical Code List
PUBLISHED - 97 Codes
PUBLISHED - 492 Codes
PUBLISHED - 24 Codes
Publication
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009
(DOI:10.1016/j.schres.2018.04.009)John, A., Friedmann, Y., DelPozo-Banos, M., Frizzati, A., Ford, T., & Thapar, A. (2022). Association of school absence and exclusion with recorded neurodevelopmental disorders, mental disorders, or self-harm: a nationwide, retrospective, electronic cohort study of children and young people in Wales, UK. The Lancet Psychiatry, 9(1), 23-34. https://doi.org/10.1016/S2215-0366(21)00367-9
(DOI:10.1016/S2215-0366(21)00367-9)
Citation Requirements
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K. (2018). Premature mortality among people with severe mental illness - New evidence from linked primary care data. Schizophrenia Research, 199, 154-162. https://doi.org/10.1016/j.schres.2018.04.009
Citation Example
John, A, McGregor, J., Jones, I., Lee, S. C., Walters, J. T. R., Owen, M. J., O'Donovan, M., DelPozo-Banos, M., Berridge, D., & Lloyd, K.. PH939 / 3519 - Schizophrenia. Phenotype Library [Online]. 22 July 2024. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH939/version/3519/detail/. [Accessed 08 September 2024]
API
To Export Phenotype Details:
Format API JSON site_root/api/v1/phenotypes/PH939/version/3519/detail/?format=json R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get details of phenotype
phenotype_details = client$phenotypes$get_detail(
'PH939',
version_id=3519
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_detail(
'PH939',
version_id=3519
)To Export Phenotype Code List:
Format API JSON site_root/api/v1/phenotypes/PH939/version/3519/export/codes/?format=json CSV site_root/phenotypes/PH939/version/3519/export/codes/ R Package library(ConceptLibraryClient)
# Connect to API
client = ConceptLibraryClient::Connection$new(public=TRUE)
# Get codelist of phenotype
phenotype_codelist = client$phenotypes$get_codelist(
'PH939',
version_id=3519
)Py Package from pyconceptlibraryclient import Client
# Connect to API
client = Client(public=True)
# Get codelist of phenotype
phenotype_codelist = client.phenotypes.get_codelist(
'PH939',
version_id=3519
)Version History