[
  {
    "phenotype_id": "PH1017",
    "phenotype_version_id": 2195,
    "name": "Smoking status",
    "definition": "Code type is set to 1 for incident events, and 0 for prevalent events.\n\n\n\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": null,
        "details": "Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1",
        "primary": true
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2022-05-09T08:02:29.793063Z",
    "author": "CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow",
    "collections": [
      {
        "name": "BHF Data Science Centre",
        "value": 20
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": {
      "id": 13,
      "slug": "bhf-data-science-centre",
      "name": "BHF Data Science Centre"
    },
    "world_access": 1,
    "updated": "2022-05-17T21:23:28.371633Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "trials": null,
    "ontology": null,
    "phenoflowid": "",
    "data_sources": [
      {
        "name": "Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT",
        "value": 37,
        "uid": "7e5f0247-f033-4f98-aed3-3d7422b9dc6d",
        "url": "https://healthdatagateway.org/en/dataset/1379",
        "datasource_id": 1379
      },
      {
        "name": "GPES Data for Pandemic Planning and Research (COVID-19)",
        "value": 1,
        "uid": "c7eed372-9f1e-467e-8a37-948f4de5abc4",
        "url": "https://healthdatagateway.org/en/dataset/874",
        "datasource_id": 874
      },
      {
        "name": "Hospital Episode Statistics Admitted Patient Care",
        "value": 2,
        "uid": "6599230a-df54-4615-937c-d724d239491f",
        "url": "https://healthdatagateway.org/en/dataset/875",
        "datasource_id": 875
      },
      {
        "name": "Secondary Uses Services Payment By Results",
        "value": 38,
        "uid": "d4c2361e-556f-4812-b17e-7f371b04c0d2",
        "url": "https://healthdatagateway.org/en/dataset/851",
        "datasource_id": 851
      },
      {
        "name": "Civil Registration - Deaths",
        "value": 3,
        "uid": "b9009bc5-b7a6-4036-9d4b-a5133c0b14a3",
        "url": "https://healthdatagateway.org/en/dataset/877",
        "datasource_id": 877
      }
    ],
    "endorsements": null,
    "project_name": "CCU002_02",
    "coding_system": [
      {
        "name": "SNOMED  CT codes",
        "value": 9
      }
    ],
    "corresp_author": null,
    "event_date_range": "08/12/2020 - 18/03/2021",
    "concept_information": [
      {
        "concept_id": 2893,
        "concept_version_id": 7414,
        "concept_name": "CCU002_02 Smoking status - Phenotypes - England primary care EHR: Ex smoker status",
        "coding_system": {
          "id": 9,
          "name": "SNOMED  CT codes",
          "description": "SNOMED CT codes"
        },
        "phenotype_id": "PH1017",
        "phenotype_version_id": 2195,
        "phenotype_name": "Smoking status",
        "code_attribute_header": [
          "terminology"
        ],
        "codes": [
          {
            "code": "1092031000000100",
            "description": "Ex-smoker amount unknown (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "1092041000000100",
            "description": "Ex-very heavy smoker (40+/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "1092071000000100",
            "description": "Ex-heavy smoker (20-39/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "1092091000000100",
            "description": "Ex-moderate smoker (10-19/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "1092111000000100",
            "description": "Ex-light smoker (1-9/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "1092131000000100",
            "description": "Ex-trivial smoker (<1/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160617001",
            "description": "Stopped smoking (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160620009",
            "description": "Ex-pipe smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160621008",
            "description": "Ex-cigar smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160625004",
            "description": "Date ceased smoking (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "228486009",
            "description": "Time since stopped smoking (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230058003",
            "description": "Pipe tobacco consumption (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230065006",
            "description": "Chain smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "266918002",
            "description": "Tobacco smoking consumption (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "266921000",
            "description": "Ex-trivial cigarette smoker (<1/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "266922007",
            "description": "Ex-light cigarette smoker (1-9/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "266923002",
            "description": "Ex-moderate cigarette smoker (10-19/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "266924008",
            "description": "Ex-heavy cigarette smoker (20-39/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "266925009",
            "description": "Ex-very heavy cigarette smoker (40+/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "266928006",
            "description": "Ex-cigarette smoker amount unknown (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "281018007",
            "description": "Ex-cigarette smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "360890004",
            "description": "Intolerant ex-smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "360900008",
            "description": "Aggressive ex-smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "48031000119106",
            "description": "Ex-smoker for more than 1 year (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "492191000000103",
            "description": "Ex roll-up cigarette smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "53896009",
            "description": "Tolerant ex-smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "735112005",
            "description": "Date ceased using moist tobacco (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "735128000",
            "description": "Ex-smoker for less than 1 year (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "8517006",
            "description": "Ex-smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          }
        ]
      },
      {
        "concept_id": 2895,
        "concept_version_id": 7415,
        "concept_name": "CCU002_02 Smoking status - Phenotypes - England primary care EHR: Current smoker status",
        "coding_system": {
          "id": 9,
          "name": "SNOMED  CT codes",
          "description": "SNOMED CT codes"
        },
        "phenotype_id": "PH1017",
        "phenotype_version_id": 2195,
        "phenotype_name": "Smoking status",
        "code_attribute_header": [
          "terminology"
        ],
        "codes": [
          {
            "code": "134406006",
            "description": "Smoking reduced (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160603005",
            "description": "Light cigarette smoker (1-9 cigs/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160604004",
            "description": "Moderate cigarette smoker (10-19 cigs/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160605003",
            "description": "Heavy cigarette smoker (20-39 cigs/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160606002",
            "description": "Very heavy cigarette smoker (40+ cigs/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160612007",
            "description": "Keeps trying to stop smoking (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160613002",
            "description": "Admitted tobacco consumption possibly untrue (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160616005",
            "description": "Trying to give up smoking (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160619003",
            "description": "Rolls own cigarettes (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "160625004",
            "description": "Date ceased smoking (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "203191000000107",
            "description": "Wants to stop smoking (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "225934006",
            "description": "Smokes in bed (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230056004",
            "description": "Cigarette consumption (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230057008",
            "description": "Cigar consumption (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230058003",
            "description": "Pipe tobacco consumption (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230059006",
            "description": "Occasional cigarette smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230060001",
            "description": "Light cigarette smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230062009",
            "description": "Moderate cigarette smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230063004",
            "description": "Heavy cigarette smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230064005",
            "description": "Very heavy cigarette smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "230065006",
            "description": "Chain smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "266918002",
            "description": "Tobacco smoking consumption (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "266920004",
            "description": "Trivial cigarette smoker (less than one cigarette/day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "266929003",
            "description": "Smoking started (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "308438006",
            "description": "Smoking restarted (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "394871007",
            "description": "Thinking about stopping smoking (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "394872000",
            "description": "Ready to stop smoking (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "394873005",
            "description": "Not interested in stopping smoking (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "401159003",
            "description": "Reason for restarting smoking (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "401201003",
            "description": "Cigarette pack-years (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "413173009",
            "description": "Minutes from waking to first tobacco consumption (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "428041000124106",
            "description": "Occasional tobacco smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "446172000",
            "description": "Failed attempt to stop smoking (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "449868002",
            "description": "Smokes tobacco daily (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "56578002",
            "description": "Moderate smoker (20 or less per day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "56771006",
            "description": "Heavy smoker (over 20 per day) (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "59978006",
            "description": "Cigar smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "65568007",
            "description": "Cigarette smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "77176002",
            "description": "Smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "82302008",
            "description": "Pipe smoker (finding)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          },
          {
            "code": "836001000000109",
            "description": "Waterpipe tobacco consumption (observable entity)",
            "attributes": {
              "terminology": "SNOMEDCT"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/0eqr-jy38",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 2,
      "name": "BHF Data Science Centre Phenotype",
      "description": "BHF Data Science Centre Phenotype definitions that describe a list of clinical codes, algorithms using clinical codes, or set of clinical trials. Visit the BHF Data Science Centre website to learn more: https://bhfdatasciencecentre.org",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 2195,
        "version_name": "Smoking status",
        "version_date": "2022-05-17T21:23:28.672594Z",
        "is_published": true,
        "is_latest": true
      },
      {
        "version_id": 2113,
        "version_name": "Smoking status",
        "version_date": "2022-05-09T08:02:29.839020Z",
        "is_published": true,
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      }
    ]
  }
]