[
  {
    "phenotype_id": "PH1058",
    "phenotype_version_id": 2319,
    "name": "HIV AIDS - Charlson primary care",
    "definition": "HIV AIDS comorbidity category for Charlson index, defined in Read codes for primary care by David Metcalfe et. al. The Charlson comorbidity index score for this phenotype is 4.",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1186/s12874-019-0753-5",
        "details": "Metcalfe, D., Masters, J., Delmestri, A. et al. Coding algorithms for defining Charlson and Elixhauser co-morbidities in Read-coded databases. BMC Med Res Methodol 19, 115 (2019). https://doi.org/10.1186/s12874-019-0753-5"
      },
      {
        "doi": null,
        "details": "Charlson ME, Pompei P, Ales KL, et al. A new method of classifying prognostic comorbidity in longitudinal studies: development and validation. J Chronic Dis. 1987;40(5):373–83."
      },
      {
        "doi": "10.1136/bmjopen-2020-047101",
        "details": "Lyons J, Akbari A, Agrawal U, et al Protocol for the development of the Wales Multimorbidity e-Cohort (WMC): data sources and methods to construct a population-based research platform to investigate multimorbidity BMJ Open 2021;11:e047101. doi: 10.1136/bmjopen-2020-047101"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2023-02-13T16:27:55.353297Z",
    "author": "David Metcalfe, James Masters, Antonella Delmestri, Andrew Judge, Daniel Perry, Cheryl Zogg, Belinda Gabbe, Matthew Costa",
    "collections": [
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": [
      {
        "name": "Comorbidity Index",
        "value": 29
      }
    ],
    "organisation": null,
    "world_access": 1,
    "updated": "2023-02-13T16:27:55.353324Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "",
    "data_sources": null,
    "coding_system": [
      {
        "name": "Read codes v2",
        "value": 5
      }
    ],
    "event_date_range": "",
    "concept_information": [
      {
        "concept_id": 3326,
        "concept_version_id": 10189,
        "concept_name": "HIV AIDS Read codes - Charlson",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH1058",
        "phenotype_version_id": 2319,
        "phenotype_name": "HIV AIDS - Charlson primary care",
        "code_attribute_header": [
          "Medcode"
        ],
        "codes": [
          {
            "code": "43C3.11",
            "description": "HIV positive",
            "attributes": {
              "Medcode": "2835"
            }
          },
          {
            "code": "43h9.00",
            "description": "HIV proviral deoxyribonucleic acid polymerase chain reaction",
            "attributes": {
              "Medcode": "89205"
            }
          },
          {
            "code": "43j7.00",
            "description": "HIV 1 nucleic acid detection",
            "attributes": {
              "Medcode": "43537"
            }
          },
          {
            "code": "43w3.00",
            "description": "Human immunodeficiency virus RNA/DNA ratio",
            "attributes": {
              "Medcode": "93642"
            }
          },
          {
            "code": "43WK.00",
            "description": "Human immunodeficiency virus antibody level",
            "attributes": {
              "Medcode": "14328"
            }
          },
          {
            "code": "4J34.00",
            "description": "HIV viral load",
            "attributes": {
              "Medcode": "27053"
            }
          },
          {
            "code": "4J3F.00",
            "description": "Human immunodeficiency virus viral load by log rank",
            "attributes": {
              "Medcode": "96902"
            }
          },
          {
            "code": "65QA.00",
            "description": "AIDS carrier",
            "attributes": {
              "Medcode": "23763"
            }
          },
          {
            "code": "65VE.00",
            "description": "Notification of AIDS",
            "attributes": {
              "Medcode": "33943"
            }
          },
          {
            "code": "66j..00",
            "description": "Human immunodeficiency virus monitoring",
            "attributes": {
              "Medcode": "98966"
            }
          },
          {
            "code": "66j0.00",
            "description": "Human immunodeficiency virus annual review",
            "attributes": {
              "Medcode": "101191"
            }
          },
          {
            "code": "799MD",
            "description": "AIDS",
            "attributes": {
              "Medcode": "302909"
            }
          },
          {
            "code": "8Hle.00",
            "description": "Referral to community HIV nurse specialist",
            "attributes": {
              "Medcode": "108631"
            }
          },
          {
            "code": "9kl..00",
            "description": "HIV pos gen health check serv declind - enhanc service admin",
            "attributes": {
              "Medcode": "105040"
            }
          },
          {
            "code": "9Nt1000",
            "description": "Seen by community HIV (human immunodeficiency virus) nurse",
            "attributes": {
              "Medcode": "107594"
            }
          },
          {
            "code": "A788.00",
            "description": "Acquired immune deficiency syndrome",
            "attributes": {
              "Medcode": "23770"
            }
          },
          {
            "code": "A788000",
            "description": "Acute human immunodeficiency virus infection",
            "attributes": {
              "Medcode": "58857"
            }
          },
          {
            "code": "A788100",
            "description": "Asymptomatic human immunodeficiency virus infection",
            "attributes": {
              "Medcode": "58859"
            }
          },
          {
            "code": "A788.11",
            "description": "Human immunodeficiency virus infection",
            "attributes": {
              "Medcode": "9130"
            }
          },
          {
            "code": "A788200",
            "description": "HIV infection with persistent generalised lymphadenopathy",
            "attributes": {
              "Medcode": "69766"
            }
          },
          {
            "code": "A788300",
            "description": "Human immunodeficiency virus with constitutional disease",
            "attributes": {
              "Medcode": "70869"
            }
          },
          {
            "code": "A788400",
            "description": "Human immunodeficiency virus with neurological disease",
            "attributes": {
              "Medcode": "53636"
            }
          },
          {
            "code": "A788500",
            "description": "Human immunodeficiency virus with secondary infection",
            "attributes": {
              "Medcode": "70528"
            }
          },
          {
            "code": "A788600",
            "description": "Human immunodeficiency virus with secondary cancers",
            "attributes": {
              "Medcode": "101836"
            }
          },
          {
            "code": "A788U00",
            "description": "HIV disease result/haematological+immunologic abnorms,NEC",
            "attributes": {
              "Medcode": "47632"
            }
          },
          {
            "code": "A788V00",
            "description": "HIV disease resulting in multiple diseases CE",
            "attributes": {
              "Medcode": "287971"
            }
          },
          {
            "code": "A788W00",
            "description": "HIV disease resulting in unspecified malignant neoplasm",
            "attributes": {
              "Medcode": "67575"
            }
          },
          {
            "code": "A788X00",
            "description": "HIV disease resulting/unspcf infectious+parasitic disease",
            "attributes": {
              "Medcode": "71450"
            }
          },
          {
            "code": "A788y00",
            "description": "Human immunodeficiency virus with other clinical findings",
            "attributes": {
              "Medcode": "62891"
            }
          },
          {
            "code": "A788z00",
            "description": "Acquired human immunodeficiency virus infection syndrome NOS",
            "attributes": {
              "Medcode": "36294"
            }
          },
          {
            "code": "A789.00",
            "description": "Human immunodef virus resulting in other disease",
            "attributes": {
              "Medcode": "44303"
            }
          },
          {
            "code": "A789000",
            "description": "HIV disease resulting in mycobacterial infection",
            "attributes": {
              "Medcode": "37006"
            }
          },
          {
            "code": "A789100",
            "description": "HIV disease resulting in cytomegaloviral disease",
            "attributes": {
              "Medcode": "66368"
            }
          },
          {
            "code": "A789200",
            "description": "HIV disease resulting in candidiasis",
            "attributes": {
              "Medcode": "23951"
            }
          },
          {
            "code": "A789300",
            "description": "HIV disease resulting in Pneumocystis carinii pneumonia",
            "attributes": {
              "Medcode": "27641"
            }
          },
          {
            "code": "A789311",
            "description": "HIV disease resulting in Pneumocystis jirovecii pneumonia",
            "attributes": {
              "Medcode": "104717"
            }
          },
          {
            "code": "A789400",
            "description": "HIV disease resulting in multiple infections",
            "attributes": {
              "Medcode": "50076"
            }
          },
          {
            "code": "A789511",
            "description": "HIV disease resulting in Kaposi sarcoma",
            "attributes": {
              "Medcode": "108054"
            }
          },
          {
            "code": "A789800",
            "description": "HIV disease resulting in multiple malignant neoplasms",
            "attributes": {
              "Medcode": "105324"
            }
          },
          {
            "code": "A789A00",
            "description": "HIV disease resulting in wasting syndrome",
            "attributes": {
              "Medcode": "8281"
            }
          },
          {
            "code": "A789X00",
            "description": "HIV dis reslt/oth mal neopl/lymph,h'matopoetc+reltd tissu",
            "attributes": {
              "Medcode": "51708"
            }
          },
          {
            "code": "AyuC.00",
            "description": "[X]Human immunodeficiency virus disease",
            "attributes": {
              "Medcode": "62854"
            }
          },
          {
            "code": "AyuC000",
            "description": "[X]HIV disease resulting in other bacterial infections",
            "attributes": {
              "Medcode": "242266"
            }
          },
          {
            "code": "AyuC100",
            "description": "[X]HIV disease resulting in other viral infections",
            "attributes": {
              "Medcode": "107807"
            }
          },
          {
            "code": "AyuC200",
            "description": "[X]HIV disease resulting in other mycoses",
            "attributes": {
              "Medcode": "224101"
            }
          },
          {
            "code": "AyuC300",
            "description": "[X]HIV disease resulting in multiple infections",
            "attributes": {
              "Medcode": "102117"
            }
          },
          {
            "code": "AyuC400",
            "description": "[X]HIV disease resulting/other infectious+parasitic diseases",
            "attributes": {
              "Medcode": "104134"
            }
          },
          {
            "code": "AyuC500",
            "description": "[X]HIV disease resulting/unspcf infectious??? disease",
            "attributes": {
              "Medcode": "260641"
            }
          },
          {
            "code": "AyuC600",
            "description": "[X]HIV disease resulting in other non-Hodgkin's lymphoma",
            "attributes": {
              "Medcode": "69767"
            }
          },
          {
            "code": "AyuC700",
            "description": "[X]HIV dis reslt/oth mal neopl/lymph,h'matopoetc? tissu",
            "attributes": {
              "Medcode": "215065"
            }
          },
          {
            "code": "AyuC800",
            "description": "[X]HIV disease resulting in other malignant neoplasms",
            "attributes": {
              "Medcode": "242267"
            }
          },
          {
            "code": "AyuC900",
            "description": "[X]HIV disease resulting in unspecified malignant neoplasm",
            "attributes": {
              "Medcode": "260642"
            }
          },
          {
            "code": "AyuCA00",
            "description": "[X]HIV disease resulting in multiple diseases CE",
            "attributes": {
              "Medcode": "224102"
            }
          },
          {
            "code": "AyuCB00",
            "description": "[X]HIV disease result/haematological+immunologic abnorms,NEC",
            "attributes": {
              "Medcode": "96751"
            }
          },
          {
            "code": "AyuCC00",
            "description": "[X]HIV disease resulting in other specified conditions",
            "attributes": {
              "Medcode": "102252"
            }
          },
          {
            "code": "AyuCD00",
            "description": "[X]Unspecified human immunodeficiency virus [HIV] disease",
            "attributes": {
              "Medcode": "100769"
            }
          },
          {
            "code": "Eu02400",
            "description": "[X]Dementia in human immunodef virus [HIV] disease",
            "attributes": {
              "Medcode": "41185"
            }
          },
          {
            "code": "L179.00",
            "description": "HIV disease complicating pregnancy childbirth puerperium",
            "attributes": {
              "Medcode": "104466"
            }
          },
          {
            "code": "L7990A",
            "description": "ACQUIRED IMMUNE DEFICIENCY SYNDROME",
            "attributes": {
              "Medcode": "228702"
            }
          },
          {
            "code": "R109.00",
            "description": "[D]Laboratory evidence of human immunodeficiency virus [HIV]",
            "attributes": {
              "Medcode": "44288"
            }
          },
          {
            "code": "ZV01A00",
            "description": "[V]Asymptomatic human immunodeficency virus infection status",
            "attributes": {
              "Medcode": "24872"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/e63g-zb67",
    "is_deleted": false,
    "publish_status": 2,
    "owner": "coldeaa",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 2319,
        "version_name": "HIV AIDS - Charlson primary care",
        "version_date": "2023-02-13T16:27:55.373817Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]