[
  {
    "phenotype_id": "PH1060",
    "phenotype_version_id": 2323,
    "name": "Mild liver disease - Charlson primary care",
    "definition": "Mild liver disease comorbidity category for Charlson index, defined in Read codes for primary care by David Metcalfe et. al. The Charlson comorbidity index score for this phenotype is 1.",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1186/s12874-019-0753-5",
        "details": "Metcalfe, D., Masters, J., Delmestri, A. et al. Coding algorithms for defining Charlson and Elixhauser co-morbidities in Read-coded databases. BMC Med Res Methodol 19, 115 (2019). https://doi.org/10.1186/s12874-019-0753-5"
      },
      {
        "doi": null,
        "details": "Charlson ME, Pompei P, Ales KL, et al. A new method of classifying prognostic comorbidity in longitudinal studies: development and validation. J Chronic Dis. 1987;40(5):373–83."
      },
      {
        "doi": "10.1136/bmjopen-2020-047101",
        "details": "Lyons J, Akbari A, Agrawal U, et al Protocol for the development of the Wales Multimorbidity e-Cohort (WMC): data sources and methods to construct a population-based research platform to investigate multimorbidity BMJ Open 2021;11:e047101. doi: 10.1136/bmjopen-2020-047101"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2023-02-13T16:28:04.485876Z",
    "author": "David Metcalfe, James Masters, Antonella Delmestri, Andrew Judge, Daniel Perry, Cheryl Zogg, Belinda Gabbe, Matthew Costa",
    "collections": [
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": [
      {
        "name": "Comorbidity Index",
        "value": 29
      }
    ],
    "organisation": null,
    "world_access": 1,
    "updated": "2023-02-13T16:28:04.485896Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "",
    "data_sources": null,
    "coding_system": [
      {
        "name": "Read codes v2",
        "value": 5
      }
    ],
    "event_date_range": "",
    "concept_information": [
      {
        "concept_id": 3328,
        "concept_version_id": 10193,
        "concept_name": "Mild liver disease Read codes - Charlson",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH1060",
        "phenotype_version_id": 2323,
        "phenotype_name": "Mild liver disease - Charlson primary care",
        "code_attribute_header": [
          "Medcode"
        ],
        "codes": [
          {
            "code": "070 G",
            "description": "HEPATITIS CHRONIC AGGRESSIVE",
            "attributes": {
              "Medcode": "303004"
            }
          },
          {
            "code": "5710CA",
            "description": "CIRRHOSIS ALCOHOLIC",
            "attributes": {
              "Medcode": "304261"
            }
          },
          {
            "code": "5710MC",
            "description": "MICRONODULAR CIRRHOSIS",
            "attributes": {
              "Medcode": "304263"
            }
          },
          {
            "code": "5719CB",
            "description": "SECONDARY BILIARY CIRRHOSIS (LIVER)",
            "attributes": {
              "Medcode": "256764"
            }
          },
          {
            "code": "5719CH",
            "description": "HEPATITIS CHRONIC",
            "attributes": {
              "Medcode": "220339"
            }
          },
          {
            "code": "5719CL",
            "description": "CIRRHOSIS",
            "attributes": {
              "Medcode": "304264"
            }
          },
          {
            "code": "5719HP",
            "description": "LIVER CIRRHOSIS",
            "attributes": {
              "Medcode": "304267"
            }
          },
          {
            "code": "5719MA",
            "description": "MACRONODULAR CIRRHOSIS",
            "attributes": {
              "Medcode": "284231"
            }
          },
          {
            "code": "5719PB",
            "description": "PRIMARY BILIARY CIRRHOSIS (LIVER)",
            "attributes": {
              "Medcode": "304268"
            }
          },
          {
            "code": "5730CA",
            "description": "HEPATITIS CHRONIC ACTIVE",
            "attributes": {
              "Medcode": "256768"
            }
          },
          {
            "code": "65V3.11",
            "description": "Hepatitis notification",
            "attributes": {
              "Medcode": "11271"
            }
          },
          {
            "code": "9kR..00",
            "description": "Chronic hepatitis annual review - enhanced services admin",
            "attributes": {
              "Medcode": "99898"
            }
          },
          {
            "code": "A703.00",
            "description": "Viral (serum) hepatitis B",
            "attributes": {
              "Medcode": "2860"
            }
          },
          {
            "code": "A705000",
            "description": "Viral hepatitis C without mention of hepatic coma",
            "attributes": {
              "Medcode": "2834"
            }
          },
          {
            "code": "A705400",
            "description": "Hepatitis non A non B",
            "attributes": {
              "Medcode": "19418"
            }
          },
          {
            "code": "A707.00",
            "description": "Chronic viral hepatitis",
            "attributes": {
              "Medcode": "26367"
            }
          },
          {
            "code": "A707000",
            "description": "Chronic viral hepatitis B with delta-agent",
            "attributes": {
              "Medcode": "24813"
            }
          },
          {
            "code": "A707100",
            "description": "Chronic viral hepatitis B without delta-agent",
            "attributes": {
              "Medcode": "41096"
            }
          },
          {
            "code": "A707200",
            "description": "Chronic viral hepatitis C",
            "attributes": {
              "Medcode": "30586"
            }
          },
          {
            "code": "A707300",
            "description": "Chronic viral hepatitis B",
            "attributes": {
              "Medcode": "106642"
            }
          },
          {
            "code": "A707X00",
            "description": "Chronic viral hepatitis, unspecified",
            "attributes": {
              "Medcode": "32277"
            }
          },
          {
            "code": "A70A.00",
            "description": "Hepatitis C genotype 1",
            "attributes": {
              "Medcode": "104341"
            }
          },
          {
            "code": "A70B.00",
            "description": "Hepatitis C genotype 2",
            "attributes": {
              "Medcode": "105664"
            }
          },
          {
            "code": "A70C.00",
            "description": "Hepatitis C genotype 3",
            "attributes": {
              "Medcode": "104346"
            }
          },
          {
            "code": "A70D.00",
            "description": "Hepatitis C genotype 4",
            "attributes": {
              "Medcode": "104892"
            }
          },
          {
            "code": "A70G.00",
            "description": "Acute hepatitis C",
            "attributes": {
              "Medcode": "104579"
            }
          },
          {
            "code": "A70z000",
            "description": "Hepatitis C",
            "attributes": {
              "Medcode": "2413"
            }
          },
          {
            "code": "AD05.00",
            "description": "Toxoplasma hepatitis",
            "attributes": {
              "Medcode": "66185"
            }
          },
          {
            "code": "AyuB100",
            "description": "[X]Other chronic viral hepatitis",
            "attributes": {
              "Medcode": "108343"
            }
          },
          {
            "code": "AyuB200",
            "description": "[X]Chronic viral hepatitis, unspecified",
            "attributes": {
              "Medcode": "107896"
            }
          },
          {
            "code": "AyuJ900",
            "description": "[X]Sequelae of viral hepatitis",
            "attributes": {
              "Medcode": "101954"
            }
          },
          {
            "code": "C310400",
            "description": "Glycogenosis with hepatic cirrhosis",
            "attributes": {
              "Medcode": "19512"
            }
          },
          {
            "code": "C350012",
            "description": "Pigmentary cirrhosis of liver",
            "attributes": {
              "Medcode": "8206"
            }
          },
          {
            "code": "C376100",
            "description": "Alpha-1-antitrypsin hepatitis",
            "attributes": {
              "Medcode": "25589"
            }
          },
          {
            "code": "J600100",
            "description": "Acute hepatitis - noninfective",
            "attributes": {
              "Medcode": "15855"
            }
          },
          {
            "code": "J600200",
            "description": "Acute yellow atrophy",
            "attributes": {
              "Medcode": "53704"
            }
          },
          {
            "code": "J601100",
            "description": "Subacute hepatitis - noninfective",
            "attributes": {
              "Medcode": "22168"
            }
          },
          {
            "code": "J601200",
            "description": "Subacute yellow atrophy",
            "attributes": {
              "Medcode": "69313"
            }
          },
          {
            "code": "J61..00",
            "description": "Cirrhosis and chronic liver disease",
            "attributes": {
              "Medcode": "6863"
            }
          },
          {
            "code": "J611.00",
            "description": "Acute alcoholic hepatitis",
            "attributes": {
              "Medcode": "3216"
            }
          },
          {
            "code": "J612.00",
            "description": "Alcoholic cirrhosis of liver",
            "attributes": {
              "Medcode": "4743"
            }
          },
          {
            "code": "J612.11",
            "description": "Florid cirrhosis",
            "attributes": {
              "Medcode": "68376"
            }
          },
          {
            "code": "J612.12",
            "description": "Laennec's cirrhosis",
            "attributes": {
              "Medcode": "100474"
            }
          },
          {
            "code": "J614.00",
            "description": "Chronic hepatitis",
            "attributes": {
              "Medcode": "1754"
            }
          },
          {
            "code": "J614000",
            "description": "Chronic persistent hepatitis",
            "attributes": {
              "Medcode": "23578"
            }
          },
          {
            "code": "J614100",
            "description": "Chronic active hepatitis",
            "attributes": {
              "Medcode": "9029"
            }
          },
          {
            "code": "J614111",
            "description": "Autoimmune chronic active hepatitis",
            "attributes": {
              "Medcode": "7957"
            }
          },
          {
            "code": "J614200",
            "description": "Chronic aggressive hepatitis",
            "attributes": {
              "Medcode": "1755"
            }
          },
          {
            "code": "J614300",
            "description": "Recurrent hepatitis",
            "attributes": {
              "Medcode": "53480"
            }
          },
          {
            "code": "J614400",
            "description": "Chronic lobular hepatitis",
            "attributes": {
              "Medcode": "66534"
            }
          },
          {
            "code": "J614y00",
            "description": "Chronic hepatitis unspecified",
            "attributes": {
              "Medcode": "53877"
            }
          },
          {
            "code": "J614z00",
            "description": "Chronic hepatitis NOS",
            "attributes": {
              "Medcode": "15489"
            }
          },
          {
            "code": "J615.00",
            "description": "Cirrhosis - non alcoholic",
            "attributes": {
              "Medcode": "16725"
            }
          },
          {
            "code": "J615000",
            "description": "Unilobular portal cirrhosis",
            "attributes": {
              "Medcode": "289370"
            }
          },
          {
            "code": "J615100",
            "description": "Multilobular portal cirrhosis",
            "attributes": {
              "Medcode": "69204"
            }
          },
          {
            "code": "J615.11",
            "description": "Portal cirrhosis",
            "attributes": {
              "Medcode": "47257"
            }
          },
          {
            "code": "J615111",
            "description": "Postnecrotic cirrhosis of liver",
            "attributes": {
              "Medcode": "234550"
            }
          },
          {
            "code": "J615300",
            "description": "Diffuse nodular cirrhosis",
            "attributes": {
              "Medcode": "3450"
            }
          },
          {
            "code": "J615400",
            "description": "Fatty portal cirrhosis",
            "attributes": {
              "Medcode": "44676"
            }
          },
          {
            "code": "J615500",
            "description": "Hypertrophic portal cirrhosis",
            "attributes": {
              "Medcode": "92909"
            }
          },
          {
            "code": "J615600",
            "description": "Capsular portal cirrhosis",
            "attributes": {
              "Medcode": "40567"
            }
          },
          {
            "code": "J615711",
            "description": "Congestive cirrhosis",
            "attributes": {
              "Medcode": "108819"
            }
          },
          {
            "code": "J615800",
            "description": "Juvenile portal cirrhosis",
            "attributes": {
              "Medcode": "96664"
            }
          },
          {
            "code": "J615812",
            "description": "Indian childhood cirrhosis",
            "attributes": {
              "Medcode": "58184"
            }
          },
          {
            "code": "J615A00",
            "description": "Pipe-stem portal cirrhosis",
            "attributes": {
              "Medcode": "289372"
            }
          },
          {
            "code": "J615B00",
            "description": "Toxic portal cirrhosis",
            "attributes": {
              "Medcode": "261920"
            }
          },
          {
            "code": "J615C00",
            "description": "Xanthomatous portal cirrhosis",
            "attributes": {
              "Medcode": "100253"
            }
          },
          {
            "code": "J615D00",
            "description": "Bacterial portal cirrhosis",
            "attributes": {
              "Medcode": "73482"
            }
          },
          {
            "code": "J615F00",
            "description": "Syphilitic portal cirrhosis",
            "attributes": {
              "Medcode": "243573"
            }
          },
          {
            "code": "J615G00",
            "description": "Zooparasitic portal cirrhosis",
            "attributes": {
              "Medcode": "109540"
            }
          },
          {
            "code": "J615H00",
            "description": "Infectious cirrhosis NOS",
            "attributes": {
              "Medcode": "48928"
            }
          },
          {
            "code": "J615y00",
            "description": "Portal cirrhosis unspecified",
            "attributes": {
              "Medcode": "55454"
            }
          },
          {
            "code": "J615z00",
            "description": "Non-alcoholic cirrhosis NOS",
            "attributes": {
              "Medcode": "16455"
            }
          },
          {
            "code": "J615z11",
            "description": "Macronodular cirrhosis of liver",
            "attributes": {
              "Medcode": "22841"
            }
          },
          {
            "code": "J615z12",
            "description": "Cryptogenic cirrhosis of liver",
            "attributes": {
              "Medcode": "18739"
            }
          },
          {
            "code": "J615z13",
            "description": "Cirrhosis of liver NOS",
            "attributes": {
              "Medcode": "1638"
            }
          },
          {
            "code": "J615z14",
            "description": "Laennec's cirrhosis, non-alcoholic",
            "attributes": {
              "Medcode": "234552"
            }
          },
          {
            "code": "J616.00",
            "description": "Biliary cirrhosis",
            "attributes": {
              "Medcode": "9494"
            }
          },
          {
            "code": "J616000",
            "description": "Primary biliary cirrhosis",
            "attributes": {
              "Medcode": "5638"
            }
          },
          {
            "code": "J616100",
            "description": "Secondary biliary cirrhosis",
            "attributes": {
              "Medcode": "15424"
            }
          },
          {
            "code": "J616200",
            "description": "Biliary cirrhosis of children",
            "attributes": {
              "Medcode": "91591"
            }
          },
          {
            "code": "J616z00",
            "description": "Biliary cirrhosis NOS",
            "attributes": {
              "Medcode": "58630"
            }
          },
          {
            "code": "J617.00",
            "description": "Alcoholic hepatitis",
            "attributes": {
              "Medcode": "7943"
            }
          },
          {
            "code": "J617000",
            "description": "Chronic alcoholic hepatitis",
            "attributes": {
              "Medcode": "7602"
            }
          },
          {
            "code": "J61y.00",
            "description": "Other non-alcoholic chronic liver disease",
            "attributes": {
              "Medcode": "42843"
            }
          },
          {
            "code": "J61y300",
            "description": "Portal fibrosis without cirrhosis",
            "attributes": {
              "Medcode": "40963"
            }
          },
          {
            "code": "J61y800",
            "description": "Nonalcoholic steatohepatitis",
            "attributes": {
              "Medcode": "98148"
            }
          },
          {
            "code": "J61yz00",
            "description": "Other non-alcoholic chronic liver disease NOS",
            "attributes": {
              "Medcode": "33597"
            }
          },
          {
            "code": "J61z.00",
            "description": "Chronic liver disease NOS",
            "attributes": {
              "Medcode": "10539"
            }
          },
          {
            "code": "J632000",
            "description": "Hepatitis in malaria",
            "attributes": {
              "Medcode": "1467"
            }
          },
          {
            "code": "J632200",
            "description": "Hepatitis in secondary syphilis",
            "attributes": {
              "Medcode": "63456"
            }
          },
          {
            "code": "J632300",
            "description": "Hepatitis in toxoplasmosis",
            "attributes": {
              "Medcode": "104686"
            }
          },
          {
            "code": "J633.00",
            "description": "Hepatitis unspecified",
            "attributes": {
              "Medcode": "899"
            }
          },
          {
            "code": "J633000",
            "description": "Toxic hepatitis",
            "attributes": {
              "Medcode": "15562"
            }
          },
          {
            "code": "J635300",
            "description": "Toxic liver disease with chronic persistent hepatitis",
            "attributes": {
              "Medcode": "17219"
            }
          },
          {
            "code": "J635400",
            "description": "Toxic liver disease with chronic lobular hepatitis",
            "attributes": {
              "Medcode": "64750"
            }
          },
          {
            "code": "J635500",
            "description": "Toxic liver disease with chronic active hepatitis",
            "attributes": {
              "Medcode": "39351"
            }
          },
          {
            "code": "J635600",
            "description": "Toxic liver disease with fibrosis and cirrhosis of liver",
            "attributes": {
              "Medcode": "44120"
            }
          },
          {
            "code": "J63B.00",
            "description": "Autoimmune hepatitis",
            "attributes": {
              "Medcode": "18652"
            }
          },
          {
            "code": "J63X.00",
            "description": "Granulomatous hepatitis, not elsewhere classified",
            "attributes": {
              "Medcode": "27663"
            }
          },
          {
            "code": "J63y100",
            "description": "Nonspecific reactive hepatitis",
            "attributes": {
              "Medcode": "28798"
            }
          },
          {
            "code": "J661100",
            "description": "Chronic cholangitis",
            "attributes": {
              "Medcode": "51530"
            }
          },
          {
            "code": "J661200",
            "description": "Recurrent cholangitis",
            "attributes": {
              "Medcode": "15678"
            }
          },
          {
            "code": "J661600",
            "description": "Obliterative cholangitis",
            "attributes": {
              "Medcode": "97670"
            }
          },
          {
            "code": "J661700",
            "description": "Primary sclerosing cholangitis",
            "attributes": {
              "Medcode": "15425"
            }
          },
          {
            "code": "J661800",
            "description": "Secondary sclerosing cholangitis",
            "attributes": {
              "Medcode": "35667"
            }
          },
          {
            "code": "J661900",
            "description": "Sclerosing cholangitis unspecified",
            "attributes": {
              "Medcode": "44791"
            }
          },
          {
            "code": "Jyu7100",
            "description": "[X]Other and unspecified cirrhosis of liver",
            "attributes": {
              "Medcode": "6015"
            }
          },
          {
            "code": "Jyu7700",
            "description": "[X]Granulomatous hepatitis, not elsewhere classified",
            "attributes": {
              "Medcode": "53861"
            }
          },
          {
            "code": "Q409100",
            "description": "Congenital hepatitis B infection",
            "attributes": {
              "Medcode": "50245"
            }
          },
          {
            "code": "Q434100",
            "description": "Giant cell hepatitis causing neonatal jaundice",
            "attributes": {
              "Medcode": "104225"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/jnm7-7y79",
    "is_deleted": false,
    "publish_status": 2,
    "owner": "coldeaa",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 2323,
        "version_name": "Mild liver disease - Charlson primary care",
        "version_date": "2023-02-13T16:28:04.503036Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]