[
  {
    "phenotype_id": "PH108",
    "phenotype_version_id": 216,
    "name": "Aspiration pneumonitis",
    "definition": "At the specified date, a patient is defined as having had 'Aspiration pneumonitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. 'Aspiration pneumonitis' diagnosis or history of diagnosis during a consultation \n\nOR\nSecondary care (ICD10)\n\n\n1. ALL diagnoses of 'Aspiration pneumonitis' or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1016/S2589-7500(19)30012-3",
        "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:03:24.373855Z",
    "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A",
    "collections": [
      {
        "name": "CALIBER",
        "value": 21
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:03:24.373883Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Aspiration-pneumonitis---08b072b0-1762-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Aspiration-pneumonitis.cwl",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      },
      {
        "name": "HES Admitted Patient Care data for CPRD GOLD",
        "value": 9,
        "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43",
        "url": "https://healthdatagateway.org/en/dataset/674",
        "datasource_id": 674
      }
    ],
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v2",
        "value": 5
      },
      {
        "name": "Med codes",
        "value": 8
      }
    ],
    "event_date_range": "01/01/1999 - 01/07/2016",
    "concept_information": [
      {
        "concept_id": 989,
        "concept_version_id": 3117,
        "concept_name": "Aspiration pneumonitis - Primary care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH108",
        "phenotype_version_id": 216,
        "phenotype_name": "Aspiration pneumonitis",
        "code_attribute_header": [
          "Disease",
          "Medcode",
          "Category"
        ],
        "codes": [
          {
            "code": "H47..00",
            "description": "Pneumonitis due to inhalation of solids or liquids",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "9711.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H470.00",
            "description": "Pneumonitis due to inhalation of food or vomitus",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "3847.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H470000",
            "description": "Pneumonitis due to inhalation of regurgitated food",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "41781.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H470100",
            "description": "Pneumonitis due to inhalation of gastric secretions",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "59083.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H470.11",
            "description": "Aspiration pneumonia",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "101204.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H470200",
            "description": "Pneumonitis due to inhalation of milk",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "66104.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H470211",
            "description": "Milk inhalation pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "30996.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H470300",
            "description": "Pneumonitis due to inhalation of vomitus",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "45948.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H470311",
            "description": "Vomit inhalation pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "56385.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H470312",
            "description": "Aspiration pneumonia due to vomit",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "25054.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H470z00",
            "description": "Pneumonitis due to inhalation of food or vomitus NOS",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "33837.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H471.00",
            "description": "Pneumonitis due to inhalation of oil or essence",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "56647.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H471000",
            "description": "Lipoid pneumonia (exogenous)",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "41015.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H47..11",
            "description": "Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "10992.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H471z00",
            "description": "Pneumonitis due to inhalation of oil or essence NOS",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "66773.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H47y.00",
            "description": "Pneumonitis due to inhalation of other solid or liquid",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "47504.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H47yz00",
            "description": "Pneumonitis due to inhalation of solid or liquid NOS",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "54252.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "H47z.00",
            "description": "Pneumonitis due to inhalation of solid or liquid NOS",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "46066.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "Hyu4700",
            "description": "[X]Pneumonitis due to inhalation of other solids and liquids",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "99232.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "SP13100",
            "description": "Other aspiration pneumonia as a complication of care",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Medcode": "13563.0",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          }
        ]
      },
      {
        "concept_id": 990,
        "concept_version_id": 3119,
        "concept_name": "Aspiration pneumonitis - Primary care",
        "coding_system": {
          "id": 8,
          "name": "Med codes",
          "description": "Med codes"
        },
        "phenotype_id": "PH108",
        "phenotype_version_id": 216,
        "phenotype_name": "Aspiration pneumonitis",
        "code_attribute_header": [
          "Disease",
          "ReadcodeDescr",
          "Readcode"
        ],
        "codes": [
          {
            "code": "101204.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Aspiration pneumonia",
              "Readcode": "H470.11"
            }
          },
          {
            "code": "10992.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Aspiration pneumonitis",
              "Readcode": "H47..11"
            }
          },
          {
            "code": "13563.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Other aspiration pneumonia as a complication of care",
              "Readcode": "SP13100"
            }
          },
          {
            "code": "25054.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Aspiration pneumonia due to vomit",
              "Readcode": "H470312"
            }
          },
          {
            "code": "30996.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Milk inhalation pneumonitis",
              "Readcode": "H470211"
            }
          },
          {
            "code": "33837.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of food or vomitus NOS",
              "Readcode": "H470z00"
            }
          },
          {
            "code": "3847.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of food or vomitus",
              "Readcode": "H470.00"
            }
          },
          {
            "code": "41015.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Lipoid pneumonia (exogenous)",
              "Readcode": "H471000"
            }
          },
          {
            "code": "41781.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of regurgitated food",
              "Readcode": "H470000"
            }
          },
          {
            "code": "45948.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of vomitus",
              "Readcode": "H470300"
            }
          },
          {
            "code": "46066.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of solid or liquid NOS",
              "Readcode": "H47z.00"
            }
          },
          {
            "code": "47504.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of other solid or liquid",
              "Readcode": "H47y.00"
            }
          },
          {
            "code": "54252.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of solid or liquid NOS",
              "Readcode": "H47yz00"
            }
          },
          {
            "code": "56385.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Vomit inhalation pneumonitis",
              "Readcode": "H470311"
            }
          },
          {
            "code": "56647.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of oil or essence",
              "Readcode": "H471.00"
            }
          },
          {
            "code": "59083.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of gastric secretions",
              "Readcode": "H470100"
            }
          },
          {
            "code": "66104.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of milk",
              "Readcode": "H470200"
            }
          },
          {
            "code": "66773.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of oil or essence NOS",
              "Readcode": "H471z00"
            }
          },
          {
            "code": "9711.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "Pneumonitis due to inhalation of solids or liquids",
              "Readcode": "H47..00"
            }
          },
          {
            "code": "99232.0",
            "description": "Diagnosis of Aspiration pneumonitis",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "ReadcodeDescr": "[X]Pneumonitis due to inhalation of other solids and liquids",
              "Readcode": "Hyu4700"
            }
          }
        ]
      },
      {
        "concept_id": 991,
        "concept_version_id": 3121,
        "concept_name": "Aspiration pneumonitis - Secondary care - Diagnoses",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH108",
        "phenotype_version_id": 216,
        "phenotype_name": "Aspiration pneumonitis",
        "code_attribute_header": [
          "Disease",
          "Category"
        ],
        "codes": [
          {
            "code": "J69.0",
            "description": "Pneumonitis due to food and vomit",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "J69.1",
            "description": "Pneumonitis due to oils and essences",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          },
          {
            "code": "J69.8",
            "description": "Pneumonitis due to other solids and liquids",
            "attributes": {
              "Disease": "Aspiration pneumonitis",
              "Category": "Diagnosis of Aspiration pneumonitis"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/6b0t-qk55",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 216,
        "version_name": "Aspiration pneumonitis",
        "version_date": "2021-10-06T16:03:24.401323Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]