[
  {
    "phenotype_id": "PH111",
    "phenotype_version_id": 222,
    "name": "Autoimmune liver disease",
    "definition": "At the specified date, a patient is defined as having had 'Autoimmune liver disease' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. 'Autoimmune liver disease' diagnosis or history of diagnosis or procedure during a consultation \n\nOR\nSecondary care\n\n\n1. ALL diagnoses of 'Autoimmune liver disease' or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1016/S2589-7500(19)30012-3",
        "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:03:32.160644Z",
    "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A",
    "collections": [
      {
        "name": "CALIBER",
        "value": 21
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:03:32.160675Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Autoimmune-liver-disease---06513080-1763-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Autoimmune-liver-disease.cwl",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      },
      {
        "name": "HES Admitted Patient Care data for CPRD GOLD",
        "value": 9,
        "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43",
        "url": "https://healthdatagateway.org/en/dataset/674",
        "datasource_id": 674
      }
    ],
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v2",
        "value": 5
      },
      {
        "name": "Med codes",
        "value": 8
      }
    ],
    "event_date_range": "01/01/1999 - 01/07/2016",
    "concept_information": [
      {
        "concept_id": 998,
        "concept_version_id": 3135,
        "concept_name": "Autoimmune liver disease - Primary care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH111",
        "phenotype_version_id": 222,
        "phenotype_name": "Autoimmune liver disease",
        "code_attribute_header": [
          "Disease",
          "Medcode",
          "Category"
        ],
        "codes": [
          {
            "code": "J614111",
            "description": "Autoimmune chronic active hepatitis",
            "attributes": {
              "Disease": "Autoimmune liver disease",
              "Medcode": "7957.0",
              "Category": "Diagnosis of Autoimmune liver disease"
            }
          },
          {
            "code": "J616000",
            "description": "Primary biliary cirrhosis",
            "attributes": {
              "Disease": "Autoimmune liver disease",
              "Medcode": "5638.0",
              "Category": "Diagnosis of Autoimmune liver disease"
            }
          },
          {
            "code": "J63B.00",
            "description": "Autoimmune hepatitis",
            "attributes": {
              "Disease": "Autoimmune liver disease",
              "Medcode": "18652.0",
              "Category": "Diagnosis of Autoimmune liver disease"
            }
          },
          {
            "code": "J661700",
            "description": "Primary sclerosing cholangitis",
            "attributes": {
              "Disease": "Autoimmune liver disease",
              "Medcode": "15425.0",
              "Category": "Diagnosis of Autoimmune liver disease"
            }
          }
        ]
      },
      {
        "concept_id": 999,
        "concept_version_id": 3137,
        "concept_name": "Autoimmune liver disease - Primary care",
        "coding_system": {
          "id": 8,
          "name": "Med codes",
          "description": "Med codes"
        },
        "phenotype_id": "PH111",
        "phenotype_version_id": 222,
        "phenotype_name": "Autoimmune liver disease",
        "code_attribute_header": [
          "Disease",
          "ReadcodeDescr",
          "Readcode"
        ],
        "codes": [
          {
            "code": "15425.0",
            "description": "Diagnosis of Autoimmune liver disease",
            "attributes": {
              "Disease": "Autoimmune liver disease",
              "ReadcodeDescr": "Primary sclerosing cholangitis",
              "Readcode": "J661700"
            }
          },
          {
            "code": "18652.0",
            "description": "Diagnosis of Autoimmune liver disease",
            "attributes": {
              "Disease": "Autoimmune liver disease",
              "ReadcodeDescr": "Autoimmune hepatitis",
              "Readcode": "J63B.00"
            }
          },
          {
            "code": "5638.0",
            "description": "Diagnosis of Autoimmune liver disease",
            "attributes": {
              "Disease": "Autoimmune liver disease",
              "ReadcodeDescr": "Primary biliary cirrhosis",
              "Readcode": "J616000"
            }
          },
          {
            "code": "7957.0",
            "description": "Diagnosis of Autoimmune liver disease",
            "attributes": {
              "Disease": "Autoimmune liver disease",
              "ReadcodeDescr": "Autoimmune chronic active hepatitis",
              "Readcode": "J614111"
            }
          }
        ]
      },
      {
        "concept_id": 1000,
        "concept_version_id": 3139,
        "concept_name": "Autoimmune liver disease - Secondary care - Diagnoses",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH111",
        "phenotype_version_id": 222,
        "phenotype_name": "Autoimmune liver disease",
        "code_attribute_header": [
          "Disease",
          "Category"
        ],
        "codes": [
          {
            "code": "K74.3",
            "description": "Primary biliary cirrhosis",
            "attributes": {
              "Disease": "Autoimmune liver disease",
              "Category": "Diagnosis of Autoimmune liver disease"
            }
          },
          {
            "code": "K75.4",
            "description": "Autoimmune hepatitis",
            "attributes": {
              "Disease": "Autoimmune liver disease",
              "Category": "Diagnosis of Autoimmune liver disease"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/ba2s-5g73",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 222,
        "version_name": "Autoimmune liver disease",
        "version_date": "2021-10-06T16:03:32.188806Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]