[ { "phenotype_id": "PH127", "phenotype_version_id": 254, "name": "Infection of bones and joints", "definition": "At the specified date, a patient is defined as having had Infection of bones and joints IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nSecondary care\n\n\n1. ALL diagnoses of Infection of bones and joints or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n", "implementation": "", "publications": [ { "doi": "10.1016/S2589-7500(19)30012-3", "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3" } ], "validation": "", "citation_requirements": "", "created": "2021-10-06T16:04:08.951556Z", "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A", "collections": [ { "name": "CALIBER", "value": 21 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2021-10-06T16:04:08.951606Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Infection-of-bones-and-joints---cb8cb330-176b-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Infection-of-bones-and-joints.cwl", "data_sources": [ { "name": "HES Admitted Patient Care data for CPRD GOLD", "value": 9, "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43", "url": "https://healthdatagateway.org/en/dataset/674", "datasource_id": 674 } ], "coding_system": [ { "name": "ICD10 codes", "value": 4 } ], "event_date_range": "01/01/1999 - 01/07/2016", "concept_information": [ { "concept_id": 1044, "concept_version_id": 3227, "concept_name": "Infection of bones and joints - Secondary care - Diagnoses", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH127", "phenotype_version_id": 254, "phenotype_name": "Infection of bones and joints", "code_attribute_header": [ "Disease", "Category" ], "codes": [ { "code": "A18.0", "description": "Tuberculosis of bones and joints", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "A54.4", "description": "Gonococcal infection of musculoskeletal system", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "B45.3", "description": "Osseous cryptococcosis", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "B67.2", "description": "Echinococcus granulosus infection of bone", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "B90.2", "description": "Sequelae of tuberculosis of bones and joints", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M00", "description": "Pyogenic arthritis", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M01", "description": "Direct infections of joint in infectious and parasitic diseases classified elsewhere", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M46.2", "description": "Osteomyelitis of vertebra", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M46.3", "description": "Infection of intervertebral disc (pyogenic)", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M46.4", "description": "Discitis, unspecified", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M46.5", "description": "Other infective spondylopathies", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M49.0", "description": "Tuberculosis of spine", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M49.1", "description": "Brucella spondylitis", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M49.2", "description": "Enterobacterial spondylitis", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M49.3", "description": "Spondylopathy in other infectious and parasitic diseases classified elsewhere", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M86", "description": "Osteomyelitis", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M90.0", "description": "Tuberculosis of bone", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M90.1", "description": "Periostitis in other infectious diseases classified elsewhere", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } }, { "code": "M90.2", "description": "Osteopathy in other infectious diseases classified elsewhere", "attributes": { "Disease": "Infection of bones and joints", "Category": "Diagnosis of Infection of bones and joints" } } ] } ], "status": 2, "doi": "https://doi.org/10.48533/xg8q-mt27", "is_deleted": null, "publish_status": 2, "owner": "ieuan.scanlon", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 254, "version_name": "Infection of bones and joints", "version_date": "2021-10-06T16:04:08.972623Z", "is_published": true, "is_latest": true } ] } ]