[ { "phenotype_id": "PH13", "phenotype_version_id": 26, "name": "Bronchiestasis", "definition": "\n\n\n\n\n\n\n\n\n\n", "implementation": "", "publications": [], "validation": "", "citation_requirements": "", "created": "2021-10-06T15:59:31.558162Z", "author": "Eleanor L Axson, Jennifer K Quint", "collections": [ { "name": "BREATHE", "value": 19 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2021-10-06T15:59:31.558195Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Bronchiestasis---706328c0-16f5-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Bronchiestasis.cwl", "data_sources": [ { "name": "CPRD GOLD", "value": 5, "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f", "url": "https://healthdatagateway.org/en/dataset/694", "datasource_id": 694 }, { "name": "CPRD Aurum", "value": 6, "uid": "1d574c14-1af0-490d-9c4e-be88cfd0e345", "url": "https://healthdatagateway.org/en/dataset/692", "datasource_id": 692 }, { "name": "HES Admitted Patient Care data for CPRD GOLD", "value": 9, "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43", "url": "https://healthdatagateway.org/en/dataset/674", "datasource_id": 674 }, { "name": "HES Admitted Patient Care data for CPRD Aurum", "value": 10, "uid": "ed2de8fe-a204-4a4e-bcfa-9e3ad85e2fee", "url": "https://healthdatagateway.org/en/dataset/675", "datasource_id": 675 }, { "name": "Death Registration data for CPRD GOLD", "value": 11, "uid": "1d35e229-13eb-4be1-9dae-4752b6c27c4a", "url": "https://healthdatagateway.org/en/dataset/653", "datasource_id": 653 }, { "name": "CPRD Aurum Civil Registrations of Death", "value": 12, "uid": "ad8f07ef-a984-449b-8a60-d1dd564cc36d", "url": "https://healthdatagateway.org/en/dataset/661", "datasource_id": 661 }, { "name": "UK Biobank", "value": 13, "uid": "6a9f93ad-2434-41d9-93bf-6e9d2eee04e5", "url": "https://healthdatagateway.org/en/dataset/700", "datasource_id": 700 } ], "coding_system": [ { "name": "ICD10 codes", "value": 4 }, { "name": "Read codes v2", "value": 5 }, { "name": "SNOMED CT codes", "value": 9 }, { "name": "UKBioBank codes", "value": 12 }, { "name": "ICD11 codes", "value": 18 } ], "event_date_range": "01/01/2001 - 31/12/2019", "concept_information": [ { "concept_id": 739, "concept_version_id": 2617, "concept_name": "Bronchiestasis - Primary care", "coding_system": { "id": 5, "name": "Read codes v2", "description": "Read codes v2" }, "phenotype_id": "PH13", "phenotype_version_id": 26, "phenotype_name": "Bronchiestasis", "code_attribute_header": [ "SNOMED CT Description ID", "SNOMED CT Concept ID", "Used by Quint et al. 2016" ], "codes": [ { "code": "A115.00", "description": "Tuberculous bronchiectasis", "attributes": { "SNOMED CT Description ID": "38677017", "SNOMED CT Concept ID": "23022004", "Used by Quint et al. 2016": "Y" } }, { "code": "H34..00", "description": "Bronchiectasis", "attributes": { "SNOMED CT Description ID": "21163015", "SNOMED CT Concept ID": "12295008", "Used by Quint et al. 2016": "Y" } }, { "code": "H340.00", "description": "Recurrent bronchiectasis", "attributes": { "SNOMED CT Description ID": "301524014", "SNOMED CT Concept ID": "195984007", "Used by Quint et al. 2016": "Y" } }, { "code": "H341.00", "description": "Post-infective bronchiectasis", "attributes": { "SNOMED CT Description ID": "301525010", "SNOMED CT Concept ID": "195985008", "Used by Quint et al. 2016": "Y" } }, { "code": "H34z.00", "description": "Bronchiectasis NOS", "attributes": { "SNOMED CT Description ID": "21163015", "SNOMED CT Concept ID": "12295008", "Used by Quint et al. 2016": "Y" } }, { "code": "P861.00", "description": "Congenital bronchiectasis", "attributes": { "SNOMED CT Description ID": "128792019", "SNOMED CT Concept ID": "77593006", "Used by Quint et al. 2016": "Y" } } ] }, { "concept_id": 740, "concept_version_id": 2619, "concept_name": "Bronchiestasis - Primary care", "coding_system": { "id": 9, "name": "SNOMED CT codes", "description": "SNOMED CT codes" }, "phenotype_id": "PH13", "phenotype_version_id": 26, "phenotype_name": "Bronchiestasis", "code_attribute_header": [ "Description", "Used by Quint et al. 2016", "Read v2 Code" ], "codes": [ { "code": "12295008", "description": "", "attributes": { "Description": "Bronchiectasis", "Used by Quint et al. 2016": "Y", "Read v2 Code": "H34..00" } }, { "code": "195984007", "description": "", "attributes": { "Description": "Recurrent bronchiectasis", "Used by Quint et al. 2016": "Y", "Read v2 Code": "H340.00" } }, { "code": "195985008", "description": "", "attributes": { "Description": "Post-infective bronchiectasis", "Used by Quint et al. 2016": "Y", "Read v2 Code": "H341.00" } }, { "code": "23022004", "description": "", "attributes": { "Description": "Tuberculous bronchiectasis", "Used by Quint et al. 2016": "Y", "Read v2 Code": "A115.00" } }, { "code": "77593006", "description": "", "attributes": { "Description": "Congenital bronchiectasis", "Used by Quint et al. 2016": "Y", "Read v2 Code": "P861.00" } } ] }, { "concept_id": 741, "concept_version_id": 2621, "concept_name": "Bronchiestasis - UK Biobank", "coding_system": { "id": 12, "name": "UKBioBank codes", "description": "UKBioBank codes" }, "phenotype_id": "PH13", "phenotype_version_id": 26, "phenotype_name": "Bronchiestasis", "code_attribute_header": [], "codes": [ { "code": "131498", "description": "Date J47 first reported (bronchiectasis)", "attributes": {} }, { "code": "131499", "description": "Source of report of J47 (bronchiectasis)", "attributes": {} }, { "code": "22134", "description": "Doctor diagnosed bronchiectasis", "attributes": {} }, { "code": "22154", "description": "Age bronchiectasis diagnosed by doctor", "attributes": {} }, { "code": "22174", "description": "Recent medication for bronchiectasis", "attributes": {} } ] }, { "concept_id": 742, "concept_version_id": 2623, "concept_name": "Bronchiestasis - Mortality", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH13", "phenotype_version_id": 26, "phenotype_name": "Bronchiestasis", "code_attribute_header": [], "codes": [ { "code": "J47", "description": "Bronchiectasis", "attributes": {} } ] }, { "concept_id": 743, "concept_version_id": 2625, "concept_name": "Bronchiestasis - Secondary care - Diagnoses", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH13", "phenotype_version_id": 26, "phenotype_name": "Bronchiestasis", "code_attribute_header": [], "codes": [ { "code": "J47", "description": "Bronchiectasis", "attributes": {} } ] }, { "concept_id": 744, "concept_version_id": 2627, "concept_name": "Bronchiestasis - Secondary care - Diagnoses", "coding_system": { "id": 18, "name": "ICD11 codes", "description": "ICD11 codes" }, "phenotype_id": "PH13", "phenotype_version_id": 26, "phenotype_name": "Bronchiestasis", "code_attribute_header": [], "codes": [ { "code": "CA24", "description": "Bronchiectasis", "attributes": {} } ] } ], "status": 2, "doi": "https://doi.org/10.48533/reez-5d55", "is_deleted": null, "publish_status": 2, "owner": "ieuan.scanlon", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 26, "version_name": "Bronchiestasis", "version_date": "2021-10-06T15:59:31.622321Z", "is_published": true, "is_latest": true } ] } ]