[ { "phenotype_id": "PH133", "phenotype_version_id": 266, "name": "Cholangitis", "definition": "At the specified date, a patient is defined as having had 'Cholangitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. 'Cholangitis' diagnosis or history of diagnosis or procedure during a consultation \n\nOR\nSecondary care\n\n\n1. ALL diagnoses of 'Cholangitis' or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n", "implementation": "", "publications": [ { "doi": "10.1016/S2589-7500(19)30012-3", "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3" } ], "validation": "", "citation_requirements": "", "created": "2021-10-06T16:04:25.509385Z", "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A", "collections": [ { "name": "CALIBER", "value": 21 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2021-10-06T16:04:25.509415Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Cholangitis---bbe8eae0-176e-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Cholangitis.cwl", "data_sources": [ { "name": "CPRD GOLD", "value": 5, "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f", "url": "https://healthdatagateway.org/en/dataset/694", "datasource_id": 694 }, { "name": "HES Admitted Patient Care data for CPRD GOLD", "value": 9, "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43", "url": "https://healthdatagateway.org/en/dataset/674", "datasource_id": 674 } ], "coding_system": [ { "name": "ICD10 codes", "value": 4 }, { "name": "Read codes v2", "value": 5 }, { "name": "Med codes", "value": 8 } ], "event_date_range": "01/01/1999 - 01/07/2016", "concept_information": [ { "concept_id": 1061, "concept_version_id": 3261, "concept_name": "Cholangitis - Primary care", "coding_system": { "id": 5, "name": "Read codes v2", "description": "Read codes v2" }, "phenotype_id": "PH133", "phenotype_version_id": 266, "phenotype_name": "Cholangitis", "code_attribute_header": [ "Disease", "Medcode", "Category" ], "codes": [ { "code": "J620100", "description": "Liver abscess due to cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "25341.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J646.00", "description": "Calculus of bile duct with cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "24866.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661.00", "description": "Cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "10431.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661000", "description": "Acute cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "40416.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661100", "description": "Chronic cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "51530.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661200", "description": "Recurrent cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "15678.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661300", "description": "Suppurative cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "41470.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661400", "description": "Ascending cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "34753.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661500", "description": "Cholangitis lenta", "attributes": { "Disease": "Cholangitis", "Medcode": "66226.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661600", "description": "Obliterative cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "97670.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661700", "description": "Primary sclerosing cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "15425.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661800", "description": "Secondary sclerosing cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "35667.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661900", "description": "Sclerosing cholangitis unspecified", "attributes": { "Disease": "Cholangitis", "Medcode": "44791.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661y00", "description": "Other cholangitis", "attributes": { "Disease": "Cholangitis", "Medcode": "33339.0", "Category": "Diagnosis of Cholangitis" } }, { "code": "J661z00", "description": "Cholangitis NOS", "attributes": { "Disease": "Cholangitis", "Medcode": "64412.0", "Category": "Diagnosis of Cholangitis" } } ] }, { "concept_id": 1062, "concept_version_id": 3263, "concept_name": "Cholangitis - Primary care", "coding_system": { "id": 8, "name": "Med codes", "description": "Med codes" }, "phenotype_id": "PH133", "phenotype_version_id": 266, "phenotype_name": "Cholangitis", "code_attribute_header": [ "Disease", "ReadcodeDescr", "Readcode" ], "codes": [ { "code": "10431.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Cholangitis", "Readcode": "J661.00" } }, { "code": "15425.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Primary sclerosing cholangitis", "Readcode": "J661700" } }, { "code": "15678.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Recurrent cholangitis", "Readcode": "J661200" } }, { "code": "24866.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Calculus of bile duct with cholangitis", "Readcode": "J646.00" } }, { "code": "25341.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Liver abscess due to cholangitis", "Readcode": "J620100" } }, { "code": "33339.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Other cholangitis", "Readcode": "J661y00" } }, { "code": "34753.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Ascending cholangitis", "Readcode": "J661400" } }, { "code": "35667.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Secondary sclerosing cholangitis", "Readcode": "J661800" } }, { "code": "40416.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Acute cholangitis", "Readcode": "J661000" } }, { "code": "41470.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Suppurative cholangitis", "Readcode": "J661300" } }, { "code": "44791.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Sclerosing cholangitis unspecified", "Readcode": "J661900" } }, { "code": "51530.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Chronic cholangitis", "Readcode": "J661100" } }, { "code": "64412.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Cholangitis NOS", "Readcode": "J661z00" } }, { "code": "66226.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Cholangitis lenta", "Readcode": "J661500" } }, { "code": "97670.0", "description": "Diagnosis of Cholangitis", "attributes": { "Disease": "Cholangitis", "ReadcodeDescr": "Obliterative cholangitis", "Readcode": "J661600" } } ] }, { "concept_id": 1063, "concept_version_id": 3265, "concept_name": "Cholangitis - Secondary care - Diagnoses", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH133", "phenotype_version_id": 266, "phenotype_name": "Cholangitis", "code_attribute_header": [ "Disease", "Category" ], "codes": [ { "code": "K80.3", "description": "Calculus of bile duct with cholangitis", "attributes": { "Disease": "Cholangitis", "Category": "Diagnosis of Cholangitis" } }, { "code": "K83.0", "description": "Cholangitis", "attributes": { "Disease": "Cholangitis", "Category": "Diagnosis of Cholangitis" } } ] } ], "status": 2, "doi": "https://doi.org/10.48533/tg6h-6n98", "is_deleted": null, "publish_status": 2, "owner": "ieuan.scanlon", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 266, "version_name": "Cholangitis", "version_date": "2021-10-06T16:04:25.536470Z", "is_published": true, "is_latest": true } ] } ]