[
  {
    "phenotype_id": "PH134",
    "phenotype_version_id": 268,
    "name": "Cholecystitis",
    "definition": "At the specified date, a patient is defined as having had 'Cholecystitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. 'Cholecystitis' diagnosis or history of diagnosis or procedure during a consultation \n\nOR\nSecondary care\n\n\n1. ALL diagnoses of 'Cholecystitis' or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1016/S2589-7500(19)30012-3",
        "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:04:27.860316Z",
    "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A",
    "collections": [
      {
        "name": "CALIBER",
        "value": 21
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:04:27.860344Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Cholecystitis---f296df70-176e-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Cholecystitis.cwl",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      },
      {
        "name": "HES Admitted Patient Care data for CPRD GOLD",
        "value": 9,
        "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43",
        "url": "https://healthdatagateway.org/en/dataset/674",
        "datasource_id": 674
      }
    ],
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v2",
        "value": 5
      },
      {
        "name": "Med codes",
        "value": 8
      }
    ],
    "event_date_range": "01/01/1999 - 01/07/2016",
    "concept_information": [
      {
        "concept_id": 1064,
        "concept_version_id": 3267,
        "concept_name": "Cholecystitis - Primary care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH134",
        "phenotype_version_id": 268,
        "phenotype_name": "Cholecystitis",
        "code_attribute_header": [
          "Disease",
          "Medcode",
          "Category"
        ],
        "codes": [
          {
            "code": "J643.00",
            "description": "Bile duct calculus with acute cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "34683.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J643000",
            "description": "Bile duct calculus + acute cholecystitis and no obstruction",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "39025.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J643100",
            "description": "Bile duct calculus + acute cholecystitis and obstruction",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "31650.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J643z00",
            "description": "Bile duct calculus + acute cholecystitis - obstruct NOS",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "96679.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J644.00",
            "description": "Bile duct calculus with other cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "26889.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J644000",
            "description": "Bile duct calculus + other cholecystitis and no obstruction",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "107004.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J644100",
            "description": "Bile duct calculus + other cholecystitis and obstruction",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "44649.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J644z00",
            "description": "Bile duct calculus + other cholecystitis - obstruction NOS",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "61298.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J650.00",
            "description": "Acute cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "505.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J650000",
            "description": "Acute cholecystitis unspecified",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "44605.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J650100",
            "description": "Acute angiocholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "72904.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J650.11",
            "description": "Abscess of gallbladder",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "44922.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J650.12",
            "description": "Empyema of gallbladder",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "932.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J650200",
            "description": "Acute emphysematous cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "46248.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J650300",
            "description": "Acute suppurative cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "38289.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J650400",
            "description": "Acute gangrenous cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "41018.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J650z00",
            "description": "Acute cholecystitis NOS",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "15735.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J651.00",
            "description": "Other cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "45172.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J651000",
            "description": "Chronic cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "7459.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J651y00",
            "description": "Other cholecystitis OS",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "63258.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "J651z00",
            "description": "Cholecystitis NOS",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "1924.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "Jyu8100",
            "description": "[X]Other cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Medcode": "101538.0",
              "Category": "Diagnosis of Cholecystitis"
            }
          }
        ]
      },
      {
        "concept_id": 1065,
        "concept_version_id": 3269,
        "concept_name": "Cholecystitis - Primary care",
        "coding_system": {
          "id": 8,
          "name": "Med codes",
          "description": "Med codes"
        },
        "phenotype_id": "PH134",
        "phenotype_version_id": 268,
        "phenotype_name": "Cholecystitis",
        "code_attribute_header": [
          "Disease",
          "ReadcodeDescr",
          "Readcode"
        ],
        "codes": [
          {
            "code": "101538.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "[X]Other cholecystitis",
              "Readcode": "Jyu8100"
            }
          },
          {
            "code": "107004.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Bile duct calculus + other cholecystitis and no obstruction",
              "Readcode": "J644000"
            }
          },
          {
            "code": "15735.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Acute cholecystitis NOS",
              "Readcode": "J650z00"
            }
          },
          {
            "code": "1924.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Cholecystitis NOS",
              "Readcode": "J651z00"
            }
          },
          {
            "code": "26889.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Bile duct calculus with other cholecystitis",
              "Readcode": "J644.00"
            }
          },
          {
            "code": "31650.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Bile duct calculus + acute cholecystitis and obstruction",
              "Readcode": "J643100"
            }
          },
          {
            "code": "34683.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Bile duct calculus with acute cholecystitis",
              "Readcode": "J643.00"
            }
          },
          {
            "code": "38289.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Acute suppurative cholecystitis",
              "Readcode": "J650300"
            }
          },
          {
            "code": "39025.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Bile duct calculus + acute cholecystitis and no obstruction",
              "Readcode": "J643000"
            }
          },
          {
            "code": "41018.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Acute gangrenous cholecystitis",
              "Readcode": "J650400"
            }
          },
          {
            "code": "44605.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Acute cholecystitis unspecified",
              "Readcode": "J650000"
            }
          },
          {
            "code": "44649.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Bile duct calculus + other cholecystitis and obstruction",
              "Readcode": "J644100"
            }
          },
          {
            "code": "44922.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Abscess of gallbladder",
              "Readcode": "J650.11"
            }
          },
          {
            "code": "45172.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Other cholecystitis",
              "Readcode": "J651.00"
            }
          },
          {
            "code": "46248.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Acute emphysematous cholecystitis",
              "Readcode": "J650200"
            }
          },
          {
            "code": "505.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Acute cholecystitis",
              "Readcode": "J650.00"
            }
          },
          {
            "code": "61298.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Bile duct calculus + other cholecystitis - obstruction NOS",
              "Readcode": "J644z00"
            }
          },
          {
            "code": "63258.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Other cholecystitis OS",
              "Readcode": "J651y00"
            }
          },
          {
            "code": "72904.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Acute angiocholecystitis",
              "Readcode": "J650100"
            }
          },
          {
            "code": "7459.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Chronic cholecystitis",
              "Readcode": "J651000"
            }
          },
          {
            "code": "932.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Empyema of gallbladder",
              "Readcode": "J650.12"
            }
          },
          {
            "code": "96679.0",
            "description": "Diagnosis of Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "ReadcodeDescr": "Bile duct calculus + acute cholecystitis - obstruct NOS",
              "Readcode": "J643z00"
            }
          }
        ]
      },
      {
        "concept_id": 1066,
        "concept_version_id": 3271,
        "concept_name": "Cholecystitis - Secondary care - Diagnoses",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH134",
        "phenotype_version_id": 268,
        "phenotype_name": "Cholecystitis",
        "code_attribute_header": [
          "Disease",
          "Category"
        ],
        "codes": [
          {
            "code": "K80.0",
            "description": "Calculus of gallbladder with acute cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "K80.1",
            "description": "Calculus of gallbladder with other cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "K80.4",
            "description": "Calculus of bile duct with cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Category": "Diagnosis of Cholecystitis"
            }
          },
          {
            "code": "K81",
            "description": "Cholecystitis",
            "attributes": {
              "Disease": "Cholecystitis",
              "Category": "Diagnosis of Cholecystitis"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/zfem-6349",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 268,
        "version_name": "Cholecystitis",
        "version_date": "2021-10-06T16:04:27.887499Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]