[ { "phenotype_id": "PH15", "phenotype_version_id": 30, "name": "Pneumonia", "definition": "These codes will capture both community- and hospital-acquired pneumonia. These codes are not intended to be mandatory, but are to be used as a starting point for the identification of pneumonia in routine EHR. Each study may differ in the sensitivity and specificity of the coding required.\n\n\nDefining a community-acquired pneumonia occurrence in CPRD and HES, Millett et al. 2013 used the following algorithm:\n\n1) Pneumonia records wtihin 28 days of each other were considered to be separate consultations for the same illness\n2) First record of pneumonia was the index date\n3) End of a pneumonia occurrence was defined as 28 days after the last pneumonia code within the illness episode\n4) In HES, pneumonia coded as the primary diagnosis on the first day of a hospital admission\n\n\nDefining a hospital-acquired pneumonia occurrence in HES and CPRD, Millett et al. 2013 used the following algorithm:\n\n1) Pneumonia coded at any time beyond the first day of a hospital admission\n2) Using CPRD in conjunction with HES, pneumonia coded in CPRD within 14 days of a hospital admission (for any cause) was deemed hospital-acquired\n3) In CPRD, use of a hospital-acquired pneumonia code at any time during the pneumonia occurrence\n\n\nMillett, E. R., Quint, J. K., Smeeth, L., Daniel, R. M., & Thomas, S. L. (2013). Incidence of community-acquired lower respiratory tract infections and pneumonia among older adults in the United Kingdom: a population-based study. PLoS One, 8(9), e75131. doi:10.1371/journal.pone.0075131\n\n\nDefining a community-acquired pneumonia resulting in hospitalisation occurrence in HES, Hicks et al. 2016 used the following algorithm:\n\n1) In HES, hospital admission following A&E visit, where pneumonia was coded as the primary diagnosis within two days of admission\n\n\nDefining a hospital-acquired pneumonia occurrence in CPRD and HES, Hicks et al. 2016 used the following algorithm:\n\n1) Pneumonia diagnosis in HES >2 days after hospital admission\n2) Pneumonia diagnosed in CPRD within 7 days after hospital discharge\n\n\nHicks, B. M., Yin, H., Bladou, F., Ernst, P., & Azoulay, L. (2017). Androgen deprivation therapy for prostate cancer and the risk of hospitalisation for community-acquired pneumonia. Thorax, 72(7), 596-597. doi:10.1136/thoraxjnl-2016-209512\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n", "implementation": "", "publications": [ { "doi": null, "details": "Publications identifying pneumonia in CPRD and/or HES:" }, { "doi": "10.1371/journal.pone.0075131", "details": "Millett, E. R., Quint, J. K., Smeeth, L., Daniel, R. M., & Thomas, S. L. (2013). Incidence of community-acquired lower respiratory tract infections and pneumonia among older adults in the United Kingdom: a population-based study. PLoS One, 8(9), e75131. doi:10.1371/journal.pone.0075131\"" }, { "doi": "10.2147/COPD.S138435", "details": "Braeken, D. C., Rohde, G. G., Franssen, F. M., Driessen, J. H., van Staa, T. P., Souverein, P. C., . . . de Vries, F. (2017). Risk of community-acquired pneumonia in chronic obstructive pulmonary disease stratified by smoking status: a population-based cohort study in the United Kingdom. Int J Chron Obstruct Pulmon Dis, 12, 2425-2432. doi:10.2147/COPD.S138435\"" }, { "doi": "10.1136/thoraxjnl-2016-209512", "details": "Hicks, B. M., Yin, H., Bladou, F., Ernst, P., & Azoulay, L. (2017). Androgen deprivation therapy for prostate cancer and the risk of hospitalisation for community-acquired pneumonia. Thorax, 72(7), 596-597. doi:10.1136/thoraxjnl-2016-209512\"" }, { "doi": "10.1017/S0950268819001559", "details": "Sun, X., Douiri, A., & Gulliford, M. (2019). Pneumonia incidence trends in UK primary care from 2002 to 2017: population-based cohort study. Epidemiol Infect, 147, e263. doi:10.1017/S0950268819001559\"" } ], "validation": "", "citation_requirements": "", "created": "2021-10-06T15:59:45.086392Z", "author": "Eleanor L Axson, Jennifer K Quint", "collections": [ { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2021-10-06T15:59:45.086424Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Pneumonia---239c81c0-16f6-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Pneumonia.cwl", "data_sources": [ { "name": "CPRD GOLD", "value": 5, "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f", "url": "https://healthdatagateway.org/en/dataset/694", "datasource_id": 694 }, { "name": "CPRD Aurum", "value": 6, "uid": "1d574c14-1af0-490d-9c4e-be88cfd0e345", "url": "https://healthdatagateway.org/en/dataset/692", "datasource_id": 692 }, { "name": "HES Admitted Patient Care data for CPRD GOLD", "value": 9, "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43", "url": "https://healthdatagateway.org/en/dataset/674", "datasource_id": 674 }, { "name": "HES Admitted Patient Care data for CPRD Aurum", "value": 10, "uid": "ed2de8fe-a204-4a4e-bcfa-9e3ad85e2fee", "url": "https://healthdatagateway.org/en/dataset/675", "datasource_id": 675 }, { "name": "Death Registration data for CPRD GOLD", "value": 11, "uid": "1d35e229-13eb-4be1-9dae-4752b6c27c4a", "url": "https://healthdatagateway.org/en/dataset/653", "datasource_id": 653 }, { "name": "CPRD Aurum Civil Registrations of Death", "value": 12, "uid": "ad8f07ef-a984-449b-8a60-d1dd564cc36d", "url": "https://healthdatagateway.org/en/dataset/661", "datasource_id": 661 }, { "name": "UK Biobank", "value": 13, "uid": "6a9f93ad-2434-41d9-93bf-6e9d2eee04e5", "url": "https://healthdatagateway.org/en/dataset/700", "datasource_id": 700 } ], "coding_system": [ { "name": "ICD10 codes", "value": 4 }, { "name": "Read codes v2", "value": 5 }, { "name": "SNOMED CT codes", "value": 9 }, { "name": "ICD11 codes", "value": 18 } ], "event_date_range": "01/01/2001 - 31/12/2019", "concept_information": [ { "concept_id": 751, "concept_version_id": 2641, "concept_name": "Pneumonia - Primary care", "coding_system": { "id": 5, "name": "Read codes v2", "description": "Read codes v2" }, "phenotype_id": "PH15", "phenotype_version_id": 30, "phenotype_name": "Pneumonia", "code_attribute_header": [ "Hospital-Acquired", "SNOMED CT Description ID", "SNOMED CT Concept ID", "Community-Acquired", "Read Codes used by Braeken et al. 2017" ], "codes": [ { "code": "4JUK.00", "description": "Mycoplasma pneumoniae detected", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "2792339011", "SNOMED CT Concept ID": "440990006", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "A022200", "description": "Salmonella pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "5303018", "SNOMED CT Concept ID": "2523007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "A116.00", "description": "Tuberculous pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "132731014", "SNOMED CT Concept ID": "80003002", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "A3BXA00", "description": "Mycoplasma pneumoniae [PPLO] cause/dis classifd/oth chaptr", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "2158243017", "SNOMED CT Concept ID": "406595002", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "A3BXB00", "description": "Klebsiella pneumoniae/cause/disease classifd/oth chapters", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "492755015", "SNOMED CT Concept ID": "40733004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "A3By.00", "description": "Other specified bacterial infection", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "145291019", "SNOMED CT Concept ID": "87628006", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "A521.00", "description": "Varicella pneumonitis", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301400016", "SNOMED CT Concept ID": "195911009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "A54x400", "description": "Herpes simplex pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "350073012", "SNOMED CT Concept ID": "233624006", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "A551.00", "description": "Postmeasles pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "294997017", "SNOMED CT Concept ID": "191727003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "AyuK900", "description": "[X]Mycoplasma pneumoniae [PPLO]cause/dis classifd/oth chaptr", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "2158243917", "SNOMED CT Concept ID": "406595002", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "AyuKA00", "description": "[X]Klebsiella pneumoniae/cause/disease classifd/oth chapters", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "492755015", "SNOMED CT Concept ID": "40733004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H2?00", "description": "Pneumonia and influenza", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H20..00", "description": "Viral pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "125510013", "SNOMED CT Concept ID": "75570004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H200.00", "description": "Pneumonia due to adenovirus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "68738015", "SNOMED CT Concept ID": "41207000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H201.00", "description": "Pneumonia due to respiratory syncytial virus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301362011", "SNOMED CT Concept ID": "195881003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H20..11", "description": "Chest infection- viral pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "125510013", "SNOMED CT Concept ID": "75570004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H202.00", "description": "Pneumonia due to parainfluenza virus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "499984015", "SNOMED CT Concept ID": "64917006", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H20y.00", "description": "Viral pneumonia NEC", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "125510013", "SNOMED CT Concept ID": "75570004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H20z.00", "description": "Viral pneumonia NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "125510013", "SNOMED CT Concept ID": "75570004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H21..00", "description": "Lobar (pneumococcal) pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "396103010", "SNOMED CT Concept ID": "266350000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H21..11", "description": "Chest infection- pneumococcal pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "396103010", "SNOMED CT Concept ID": "266350000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H21..99", "description": "Lobar-penumococcal-pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "885191000006112", "SNOMED CT Concept ID": "266350000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H22..00", "description": "Other bacterial pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H220.00", "description": "Pneumonia due to Klebsiella pneumoniae", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "107173015", "SNOMED CT Concept ID": "64479007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H221.00", "description": "Pneumonia due to pseudomonas", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "69027016", "SNOMED CT Concept ID": "41381004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22..11", "description": "Chest infection- other bacterial pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H222.00", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "116320011", "SNOMED CT Concept ID": "70036007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H222.11", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "116320011", "SNOMED CT Concept ID": "70036007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H223.00", "description": "Pneumonia due to streptococcus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "56817014", "SNOMED CT Concept ID": "34020007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H223000", "description": "Pneumonia due to streptococcus, group B", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301369019", "SNOMED CT Concept ID": "195886008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H224.00", "description": "Pneumonia due to staphylococcus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "38198016", "SNOMED CT Concept ID": "22754005", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22y.00", "description": "Pneumonia due to other specified bacteria", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22y000", "description": "Pneumonia due to Escherichia coli", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1230992012", "SNOMED CT Concept ID": "51530003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22y011", "description": "E.coli pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1230992012", "SNOMED CT Concept ID": "51530003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22y100", "description": "Pneumonia due to proteus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301371019", "SNOMED CT Concept ID": "195888009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22y200", "description": "Pneumonia- legionella", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301372014", "SNOMED CT Concept ID": "195889001", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22yx00", "description": "Pneumonia due to other aerobic gram-negative bacteria", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22yz00", "description": "Pneumonia due to bacteria NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22z.00", "description": "Bacterial pneumonia NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H23..00", "description": "Pneumonia due to other specified organisms", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H231.00", "description": "Pneumonia due to Mycoplasma pneumoniae", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "494705012", "SNOMED CT Concept ID": "46970008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H23..11", "description": "Chest infection- pneumonia organisms OS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H231.99", "description": "Mycoplasma pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "78272011", "SNOMED CT Concept ID": "46970008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H232.00", "description": "Pneumonia due to pleuropneumonia like organisms", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301380019", "SNOMED CT Concept ID": "195896004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H233.00", "description": "Chlamydial pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "350054013", "SNOMED CT Concept ID": "233609002", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H23z.00", "description": "Pneumonia due to specified organism NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24..00", "description": "Pneumonia with infectious disease EC", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H240.00", "description": "Pneumonia with measles", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301386013", "SNOMED CT Concept ID": "195900001", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H240.99", "description": "Measles pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301386013", "SNOMED CT Concept ID": "195900001", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H243.00", "description": "Pneumonia with whooping cough", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1231963019", "SNOMED CT Concept ID": "59475000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H243.11", "description": "Pneumonia with pertussis", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1231962012", "SNOMED CT Concept ID": "59475000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H243.99", "description": "Whooping cough pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "885221000006117", "SNOMED CT Concept ID": "59475000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H246.00", "description": "Pneumonia with aspergillosis", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1219703018", "SNOMED CT Concept ID": "111900000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24y.00", "description": "Pneumonia with infectious diseases EC", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24y000", "description": "Pneumonia with actinomycosis", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301395017", "SNOMED CT Concept ID": "195908008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24y200", "description": "Pneumonia with pneumocystis carinii", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "2533533015", "SNOMED CT Concept ID": "415125002", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24y700", "description": "Pneumonia with varicella", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301399011", "SNOMED CT Concept ID": "195911009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24yz00", "description": "Pneumonia with other infectious diseases EC NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24z.00", "description": "Pneumonia with infectious diseases EC NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H25..00", "description": "Bronchopneumonia due to unspecified organism", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1776258010", "SNOMED CT Concept ID": "396285007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H25..11", "description": "Chest infection- unspecified bronchopneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1776258010", "SNOMED CT Concept ID": "396285007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H25..99", "description": "Bronchopneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "885231000006119", "SNOMED CT Concept ID": "689401000000108", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H26..00", "description": "Pneumonia due to unspecified organism", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H260.00", "description": "Lobar pneumonia due to unspecified organism", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "415454013", "SNOMED CT Concept ID": "278516003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H260000", "description": "Lung consolidation", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "512123013", "SNOMED CT Concept ID": "95436008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H261.00", "description": "Basal pneumonia due to unspecified organism", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "442211014", "SNOMED CT Concept ID": "300999006", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H26..11", "description": "Chest infection- pneumonia due to unspecified organism", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H262.00", "description": "Postoperative pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "459416013", "SNOMED CT Concept ID": "314978007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H263.00", "description": "Pneumonitis", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "314740018", "SNOMED CT Concept ID": "205237003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H270.00", "description": "Influenza with pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H270000", "description": "Influenza with bronchopneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1229740013", "SNOMED CT Concept ID": "41269000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H270100", "description": "Influenza with pneumonia, influenza virus identified", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H270.11", "description": "Chest infection- influenza with pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H270.99", "description": "Influenza + pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "885251000006114", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H270z00", "description": "Other specified pneumonia or influenza", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H28..00", "description": "Atypical pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "350051017", "SNOMED CT Concept ID": "233606009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H2B..00", "description": "Community acquired pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1479355018", "SNOMED CT Concept ID": "385093006", "Community-Acquired": "Y", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H2C..00", "description": "Hospital acquired pneumonia", "attributes": { "Hospital-Acquired": "Y", "SNOMED CT Description ID": "2674072012", "SNOMED CT Concept ID": "425464007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H2y..00", "description": "Other specified pneumonia or influenza", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H2z..00", "description": "Pneumonia or influenza NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H2z..98", "description": "Bilateral pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "932231000006112", "SNOMED CT Concept ID": "540151000000108", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H530300", "description": "Abscess of lung with pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301686019", "SNOMED CT Concept ID": "196112005", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H56y100", "description": "Interstitial pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "107470010", "SNOMED CT Concept ID": "64667001", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H571.00", "description": "Rheumatic pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "13455018", "SNOMED CT Concept ID": "7548000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "Hyu0800", "description": "[X]Other viral pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "125510013", "SNOMED CT Concept ID": "75570004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "Hyu0A00", "description": "[X]Other bacterial pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "Hyu0B00", "description": "[X]Pneumonia due to other specified infectious organisms", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "Hyu0H00", "description": "[X]Other pneumonia, organism unspecified", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } } ] }, { "concept_id": 752, "concept_version_id": 2643, "concept_name": "Pneumonia - Primary care", "coding_system": { "id": 9, "name": "SNOMED CT codes", "description": "SNOMED CT codes" }, "phenotype_id": "PH15", "phenotype_version_id": 30, "phenotype_name": "Pneumonia", "code_attribute_header": [ "Hospital-Acquired", "Description", "Community-Acquired", "Read Codes used by Braeken et al. 2017", "Read v2 Code" ], "codes": [ { "code": "1033111000000104", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Influenza with pneumonia due to seasonal influenza virus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "111900000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia with aspergillosis", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H246.00" } }, { "code": "191727003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Postmeasles pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "A551.00" } }, { "code": "195878008", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Chest infection- influenza with pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H270.11" } }, { "code": "195881003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to respiratory syncytial virus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H201.00" } }, { "code": "195886008", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to streptococcus, group B", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H223000" } }, { "code": "195888009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to proteus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H22y100" } }, { "code": "195889001", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia- legionella", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H22y200" } }, { "code": "195896004", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to pleuropneumonia like organisms", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H232.00" } }, { "code": "195900001", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Measles pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H240.99" } }, { "code": "195908008", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia with actinomycosis", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H24y000" } }, { "code": "195911009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia with varicella", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H24y700" } }, { "code": "196112005", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Abscess of lung with pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H530300" } }, { "code": "205237003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonitis", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H263.00" } }, { "code": "22754005", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to staphylococcus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H224.00" } }, { "code": "233606009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Atypical pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H28..00" } }, { "code": "233609002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Chlamydial pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H233.00" } }, { "code": "233624006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Herpes simplex pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "A54x400" } }, { "code": "2523007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Salmonella pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "A022200" } }, { "code": "266350000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Chest infection- pneumococcal pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H21..11" } }, { "code": "278516003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Lobar pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "300999006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Basal pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "301000005", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Left lower zone pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "301001009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Right lower zone pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "301002002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Left upper zone pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "301003007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Right middle zone pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "301004001", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Right upper zone pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "312342009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "[X]Other pneumonia, organism unspecified", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "Hyu0H00" } }, { "code": "314978007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Postoperative pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H262.00" } }, { "code": "34020007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to streptococcus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H223.00" } }, { "code": "385093006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Community acquired pneumonia", "Community-Acquired": "Y", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H2B..00" } }, { "code": "396285007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Bronchopneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "406595002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "[X]Mycoplasma pneumoniae [PPLO]cause/dis classifd/oth chaptr", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "AyuK900" } }, { "code": "40733004", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "[X]Klebsiella pneumoniae/cause/disease classifd/oth chapters", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "AyuKA00" } }, { "code": "41207000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to adenovirus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H200.00" } }, { "code": "41269000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Influenza with bronchopneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H270000" } }, { "code": "41381004", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to pseudomonas", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H221.00" } }, { "code": "415125002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia with pneumocystis carinii", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H24y200" } }, { "code": "425464007", "description": "", "attributes": { "Hospital-Acquired": "Y", "Description": "Hospital acquired pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H2C..00" } }, { "code": "425996009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Bilateral basal pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "426696003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Lingular pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "440990006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Mycoplasma pneumoniae detected", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "4JUK.00" } }, { "code": "46970008", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Mycoplasma pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H231.99" } }, { "code": "51530003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "E.coli pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H22y011" } }, { "code": "53084003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "[X]Other bacterial pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "Hyu0A00" } }, { "code": "540151000000108", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Bilateral pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H2z..98" } }, { "code": "59475000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia with pertussis", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H243.11" } }, { "code": "64479007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to Klebsiella pneumoniae", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H220.00" } }, { "code": "64667001", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Interstitial pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H56y100" } }, { "code": "64917006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to parainfluenza virus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H202.00" } }, { "code": "689401000000108", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Bronchopneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H25..99" } }, { "code": "70036007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to Haemophilus influenzae", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H222.00" } }, { "code": "7548000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Rheumatic pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H571.00" } }, { "code": "75570004", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "[X]Other viral pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "Hyu0800" } }, { "code": "80003002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Tuberculous pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "A116.00" } }, { "code": "87628006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Other specified bacterial infection", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "A3By.00" } }, { "code": "95436008", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Lung consolidation", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H260000" } }, { "code": "9861002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Streptococcus pneumoniae", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } } ] }, { "concept_id": 753, "concept_version_id": 2645, "concept_name": "Pneumonia - UK Biobank", "coding_system": { "id": 5, "name": "Read codes v2", "description": "Read codes v2" }, "phenotype_id": "PH15", "phenotype_version_id": 30, "phenotype_name": "Pneumonia", "code_attribute_header": [ "Hospital-Acquired", "SNOMED CT Description ID", "SNOMED CT Concept ID", "Community-Acquired", "Read Codes used by Braeken et al. 2017" ], "codes": [ { "code": "4JUK.00", "description": "Mycoplasma pneumoniae detected", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "2792339011", "SNOMED CT Concept ID": "440990006", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "A022200", "description": "Salmonella pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "5303018", "SNOMED CT Concept ID": "2523007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "A116.00", "description": "Tuberculous pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "132731014", "SNOMED CT Concept ID": "80003002", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "A3BXA00", "description": "Mycoplasma pneumoniae [PPLO] cause/dis classifd/oth chaptr", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "2158243017", "SNOMED CT Concept ID": "406595002", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "A3BXB00", "description": "Klebsiella pneumoniae/cause/disease classifd/oth chapters", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "492755015", "SNOMED CT Concept ID": "40733004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "A3By.00", "description": "Other specified bacterial infection", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "145291019", "SNOMED CT Concept ID": "87628006", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "A521.00", "description": "Varicella pneumonitis", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301400016", "SNOMED CT Concept ID": "195911009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "A54x400", "description": "Herpes simplex pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "350073012", "SNOMED CT Concept ID": "233624006", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "A551.00", "description": "Postmeasles pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "294997017", "SNOMED CT Concept ID": "191727003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "AyuK900", "description": "[X]Mycoplasma pneumoniae [PPLO]cause/dis classifd/oth chaptr", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "2158243917", "SNOMED CT Concept ID": "406595002", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "AyuKA00", "description": "[X]Klebsiella pneumoniae/cause/disease classifd/oth chapters", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "492755015", "SNOMED CT Concept ID": "40733004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H2?00", "description": "Pneumonia and influenza", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H20..00", "description": "Viral pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "125510013", "SNOMED CT Concept ID": "75570004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H200.00", "description": "Pneumonia due to adenovirus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "68738015", "SNOMED CT Concept ID": "41207000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H201.00", "description": "Pneumonia due to respiratory syncytial virus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301362011", "SNOMED CT Concept ID": "195881003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H20..11", "description": "Chest infection- viral pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "125510013", "SNOMED CT Concept ID": "75570004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H202.00", "description": "Pneumonia due to parainfluenza virus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "499984015", "SNOMED CT Concept ID": "64917006", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H20y.00", "description": "Viral pneumonia NEC", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "125510013", "SNOMED CT Concept ID": "75570004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H20z.00", "description": "Viral pneumonia NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "125510013", "SNOMED CT Concept ID": "75570004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H21..00", "description": "Lobar (pneumococcal) pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "396103010", "SNOMED CT Concept ID": "266350000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H21..11", "description": "Chest infection- pneumococcal pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "396103010", "SNOMED CT Concept ID": "266350000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H21..99", "description": "Lobar-penumococcal-pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "885191000006112", "SNOMED CT Concept ID": "266350000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H22..00", "description": "Other bacterial pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H220.00", "description": "Pneumonia due to Klebsiella pneumoniae", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "107173015", "SNOMED CT Concept ID": "64479007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H221.00", "description": "Pneumonia due to pseudomonas", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "69027016", "SNOMED CT Concept ID": "41381004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22..11", "description": "Chest infection- other bacterial pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H222.00", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "116320011", "SNOMED CT Concept ID": "70036007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H222.11", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "116320011", "SNOMED CT Concept ID": "70036007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H223.00", "description": "Pneumonia due to streptococcus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "56817014", "SNOMED CT Concept ID": "34020007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H223000", "description": "Pneumonia due to streptococcus, group B", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301369019", "SNOMED CT Concept ID": "195886008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H224.00", "description": "Pneumonia due to staphylococcus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "38198016", "SNOMED CT Concept ID": "22754005", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22y.00", "description": "Pneumonia due to other specified bacteria", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22y000", "description": "Pneumonia due to Escherichia coli", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1230992012", "SNOMED CT Concept ID": "51530003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22y011", "description": "E.coli pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1230992012", "SNOMED CT Concept ID": "51530003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22y100", "description": "Pneumonia due to proteus", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301371019", "SNOMED CT Concept ID": "195888009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22y200", "description": "Pneumonia- legionella", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301372014", "SNOMED CT Concept ID": "195889001", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22yx00", "description": "Pneumonia due to other aerobic gram-negative bacteria", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22yz00", "description": "Pneumonia due to bacteria NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H22z.00", "description": "Bacterial pneumonia NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H23..00", "description": "Pneumonia due to other specified organisms", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H231.00", "description": "Pneumonia due to Mycoplasma pneumoniae", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "494705012", "SNOMED CT Concept ID": "46970008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H23..11", "description": "Chest infection- pneumonia organisms OS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H231.99", "description": "Mycoplasma pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "78272011", "SNOMED CT Concept ID": "46970008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H232.00", "description": "Pneumonia due to pleuropneumonia like organisms", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301380019", "SNOMED CT Concept ID": "195896004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H233.00", "description": "Chlamydial pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "350054013", "SNOMED CT Concept ID": "233609002", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H23z.00", "description": "Pneumonia due to specified organism NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24..00", "description": "Pneumonia with infectious disease EC", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H240.00", "description": "Pneumonia with measles", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301386013", "SNOMED CT Concept ID": "195900001", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H240.99", "description": "Measles pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301386013", "SNOMED CT Concept ID": "195900001", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H243.00", "description": "Pneumonia with whooping cough", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1231963019", "SNOMED CT Concept ID": "59475000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H243.11", "description": "Pneumonia with pertussis", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1231962012", "SNOMED CT Concept ID": "59475000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H243.99", "description": "Whooping cough pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "885221000006117", "SNOMED CT Concept ID": "59475000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H246.00", "description": "Pneumonia with aspergillosis", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1219703018", "SNOMED CT Concept ID": "111900000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24y.00", "description": "Pneumonia with infectious diseases EC", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24y000", "description": "Pneumonia with actinomycosis", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301395017", "SNOMED CT Concept ID": "195908008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24y200", "description": "Pneumonia with pneumocystis carinii", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "2533533015", "SNOMED CT Concept ID": "415125002", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24y700", "description": "Pneumonia with varicella", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301399011", "SNOMED CT Concept ID": "195911009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24yz00", "description": "Pneumonia with other infectious diseases EC NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H24z.00", "description": "Pneumonia with infectious diseases EC NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H25..00", "description": "Bronchopneumonia due to unspecified organism", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1776258010", "SNOMED CT Concept ID": "396285007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H25..11", "description": "Chest infection- unspecified bronchopneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1776258010", "SNOMED CT Concept ID": "396285007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H25..99", "description": "Bronchopneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "885231000006119", "SNOMED CT Concept ID": "689401000000108", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H26..00", "description": "Pneumonia due to unspecified organism", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H260.00", "description": "Lobar pneumonia due to unspecified organism", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "415454013", "SNOMED CT Concept ID": "278516003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H260000", "description": "Lung consolidation", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "512123013", "SNOMED CT Concept ID": "95436008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H261.00", "description": "Basal pneumonia due to unspecified organism", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "442211014", "SNOMED CT Concept ID": "300999006", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H26..11", "description": "Chest infection- pneumonia due to unspecified organism", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H262.00", "description": "Postoperative pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "459416013", "SNOMED CT Concept ID": "314978007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H263.00", "description": "Pneumonitis", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "314740018", "SNOMED CT Concept ID": "205237003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H270.00", "description": "Influenza with pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H270000", "description": "Influenza with bronchopneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1229740013", "SNOMED CT Concept ID": "41269000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H270100", "description": "Influenza with pneumonia, influenza virus identified", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H270.11", "description": "Chest infection- influenza with pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H270.99", "description": "Influenza + pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "885251000006114", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H270z00", "description": "Other specified pneumonia or influenza", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H28..00", "description": "Atypical pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "350051017", "SNOMED CT Concept ID": "233606009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H2B..00", "description": "Community acquired pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "1479355018", "SNOMED CT Concept ID": "385093006", "Community-Acquired": "Y", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H2C..00", "description": "Hospital acquired pneumonia", "attributes": { "Hospital-Acquired": "Y", "SNOMED CT Description ID": "2674072012", "SNOMED CT Concept ID": "425464007", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H2y..00", "description": "Other specified pneumonia or influenza", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H2z..00", "description": "Pneumonia or influenza NOS", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301357010", "SNOMED CT Concept ID": "195878008", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H2z..98", "description": "Bilateral pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "932231000006112", "SNOMED CT Concept ID": "540151000000108", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "H530300", "description": "Abscess of lung with pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "301686019", "SNOMED CT Concept ID": "196112005", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H56y100", "description": "Interstitial pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "107470010", "SNOMED CT Concept ID": "64667001", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "H571.00", "description": "Rheumatic pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "13455018", "SNOMED CT Concept ID": "7548000", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } }, { "code": "Hyu0800", "description": "[X]Other viral pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "125510013", "SNOMED CT Concept ID": "75570004", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "Hyu0A00", "description": "[X]Other bacterial pneumonia", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "88303013", "SNOMED CT Concept ID": "53084003", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "Hyu0B00", "description": "[X]Pneumonia due to other specified infectious organisms", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y" } }, { "code": "Hyu0H00", "description": "[X]Other pneumonia, organism unspecified", "attributes": { "Hospital-Acquired": "", "SNOMED CT Description ID": "456043010", "SNOMED CT Concept ID": "312342009", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "" } } ] }, { "concept_id": 754, "concept_version_id": 2647, "concept_name": "Pneumonia - UK Biobank", "coding_system": { "id": 9, "name": "SNOMED CT codes", "description": "SNOMED CT codes" }, "phenotype_id": "PH15", "phenotype_version_id": 30, "phenotype_name": "Pneumonia", "code_attribute_header": [ "Hospital-Acquired", "Description", "Community-Acquired", "Read Codes used by Braeken et al. 2017", "Read v2 Code" ], "codes": [ { "code": "1033111000000104", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Influenza with pneumonia due to seasonal influenza virus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "111900000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia with aspergillosis", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H246.00" } }, { "code": "191727003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Postmeasles pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "A551.00" } }, { "code": "195878008", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Chest infection- influenza with pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H270.11" } }, { "code": "195881003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to respiratory syncytial virus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H201.00" } }, { "code": "195886008", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to streptococcus, group B", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H223000" } }, { "code": "195888009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to proteus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H22y100" } }, { "code": "195889001", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia- legionella", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H22y200" } }, { "code": "195896004", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to pleuropneumonia like organisms", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H232.00" } }, { "code": "195900001", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Measles pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H240.99" } }, { "code": "195908008", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia with actinomycosis", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H24y000" } }, { "code": "195911009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia with varicella", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H24y700" } }, { "code": "196112005", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Abscess of lung with pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H530300" } }, { "code": "205237003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonitis", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H263.00" } }, { "code": "22754005", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to staphylococcus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H224.00" } }, { "code": "233606009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Atypical pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H28..00" } }, { "code": "233609002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Chlamydial pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H233.00" } }, { "code": "233624006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Herpes simplex pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "A54x400" } }, { "code": "2523007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Salmonella pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "A022200" } }, { "code": "266350000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Chest infection- pneumococcal pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H21..11" } }, { "code": "278516003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Lobar pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "300999006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Basal pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "301000005", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Left lower zone pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "301001009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Right lower zone pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "301002002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Left upper zone pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "301003007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Right middle zone pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "301004001", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Right upper zone pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "312342009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "[X]Other pneumonia, organism unspecified", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "Hyu0H00" } }, { "code": "314978007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Postoperative pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H262.00" } }, { "code": "34020007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to streptococcus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H223.00" } }, { "code": "385093006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Community acquired pneumonia", "Community-Acquired": "Y", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H2B..00" } }, { "code": "396285007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Bronchopneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "406595002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "[X]Mycoplasma pneumoniae [PPLO]cause/dis classifd/oth chaptr", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "AyuK900" } }, { "code": "40733004", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "[X]Klebsiella pneumoniae/cause/disease classifd/oth chapters", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "AyuKA00" } }, { "code": "41207000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to adenovirus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H200.00" } }, { "code": "41269000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Influenza with bronchopneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H270000" } }, { "code": "41381004", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to pseudomonas", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H221.00" } }, { "code": "415125002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia with pneumocystis carinii", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H24y200" } }, { "code": "425464007", "description": "", "attributes": { "Hospital-Acquired": "Y", "Description": "Hospital acquired pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H2C..00" } }, { "code": "425996009", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Bilateral basal pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "426696003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Lingular pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } }, { "code": "440990006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Mycoplasma pneumoniae detected", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "4JUK.00" } }, { "code": "46970008", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Mycoplasma pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H231.99" } }, { "code": "51530003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "E.coli pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H22y011" } }, { "code": "53084003", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "[X]Other bacterial pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "Hyu0A00" } }, { "code": "540151000000108", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Bilateral pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H2z..98" } }, { "code": "59475000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia with pertussis", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H243.11" } }, { "code": "64479007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to Klebsiella pneumoniae", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H220.00" } }, { "code": "64667001", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Interstitial pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H56y100" } }, { "code": "64917006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to parainfluenza virus", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H202.00" } }, { "code": "689401000000108", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Bronchopneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H25..99" } }, { "code": "70036007", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Pneumonia due to Haemophilus influenzae", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H222.00" } }, { "code": "7548000", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Rheumatic pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "H571.00" } }, { "code": "75570004", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "[X]Other viral pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "Hyu0800" } }, { "code": "80003002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Tuberculous pneumonia", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "A116.00" } }, { "code": "87628006", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Other specified bacterial infection", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "A3By.00" } }, { "code": "95436008", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Lung consolidation", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "Y", "Read v2 Code": "H260000" } }, { "code": "9861002", "description": "", "attributes": { "Hospital-Acquired": "", "Description": "Streptococcus pneumoniae", "Community-Acquired": "", "Read Codes used by Braeken et al. 2017": "", "Read v2 Code": "" } } ] }, { "concept_id": 755, "concept_version_id": 2649, "concept_name": "Pneumonia - Mortality", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH15", "phenotype_version_id": 30, "phenotype_name": "Pneumonia", "code_attribute_header": [], "codes": [ { "code": "B01.2+", "description": "Varicella pneumonia", "attributes": {} }, { "code": "J10.0", "description": "Influenza with pneumonia, other influenza virus identified", "attributes": {} }, { "code": "J11.0", "description": "Influenza with pneumonia, virus not identified", "attributes": {} }, { "code": "J12", "description": "Viral pneumonia, not elsewhere classified", "attributes": {} }, { "code": "J13", "description": "Pneumonia due to Streptococcus pneumoniae", "attributes": {} }, { "code": "J14", "description": "Pneumonia due to Haemophilus influenzae", "attributes": {} }, { "code": "J15", "description": "Bacterial pneumonia, not elsewhere classified", "attributes": {} }, { "code": "J16", "description": "Pneumonia due to other infectious organisms, not elsewhere classified", "attributes": {} }, { "code": "J17", "description": "Pneumonia in diseases classified elsewhere", "attributes": {} }, { "code": "J18", "description": "Pneumonia, organism unspecified", "attributes": {} } ] }, { "concept_id": 756, "concept_version_id": 2651, "concept_name": "Pneumonia - Secondary care - Diagnoses", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH15", "phenotype_version_id": 30, "phenotype_name": "Pneumonia", "code_attribute_header": [], "codes": [ { "code": "B01.2+", "description": "Varicella pneumonia", "attributes": {} }, { "code": "J10.0", "description": "Influenza with pneumonia, other influenza virus identified", "attributes": {} }, { "code": "J11.0", "description": "Influenza with pneumonia, virus not identified", "attributes": {} }, { "code": "J12", "description": "Viral pneumonia, not elsewhere classified", "attributes": {} }, { "code": "J13", "description": "Pneumonia due to Streptococcus pneumoniae", "attributes": {} }, { "code": "J14", "description": "Pneumonia due to Haemophilus influenzae", "attributes": {} }, { "code": "J15", "description": "Bacterial pneumonia, not elsewhere classified", "attributes": {} }, { "code": "J16", "description": "Pneumonia due to other infectious organisms, not elsewhere classified", "attributes": {} }, { "code": "J17", "description": "Pneumonia in diseases classified elsewhere", "attributes": {} }, { "code": "J18", "description": "Pneumonia, organism unspecified", "attributes": {} } ] }, { "concept_id": 757, "concept_version_id": 2653, "concept_name": "Pneumonia - Secondary care - Diagnoses", "coding_system": { "id": 18, "name": "ICD11 codes", "description": "ICD11 codes" }, "phenotype_id": "PH15", "phenotype_version_id": 30, "phenotype_name": "Pneumonia", "code_attribute_header": [], "codes": [ { "code": "CA40", "description": "Pneumonia", "attributes": {} } ] } ], "status": 2, "doi": "https://doi.org/10.48533/j48j-jj39", "is_deleted": null, "publish_status": 2, "owner": "ieuan.scanlon", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 30, "version_name": "Pneumonia", "version_date": "2021-10-06T15:59:45.151882Z", "is_published": true, "is_latest": true } ] } ]