[ { "phenotype_id": "PH153", "phenotype_version_id": 306, "name": "Infections of the digestive system", "definition": "At the specified date, a patient is defined as having had Infections of the digestive system IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nSecondary care\n\n\n1. ALL diagnoses of Infections of the digestive system or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n", "implementation": "", "publications": [ { "doi": "10.1016/S2589-7500(19)30012-3", "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3" } ], "validation": "", "citation_requirements": "", "created": "2021-10-06T16:05:26.611742Z", "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A", "collections": [ { "name": "CALIBER", "value": 21 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2021-10-06T16:05:26.611771Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Infections-of-the-digestive-system---6e3d3a10-177a-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Infections-of-the-digestive-system.cwl", "data_sources": [ { "name": "HES Admitted Patient Care data for CPRD GOLD", "value": 9, "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43", "url": "https://healthdatagateway.org/en/dataset/674", "datasource_id": 674 } ], "coding_system": [ { "name": "ICD10 codes", "value": 4 } ], "event_date_range": "01/01/1999 - 01/07/2016", "concept_information": [ { "concept_id": 1123, "concept_version_id": 3385, "concept_name": "Infections of the digestive system - Secondary care - Diagnoses", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH153", "phenotype_version_id": 306, "phenotype_name": "Infections of the digestive system", "code_attribute_header": [ "Disease", "Category" ], "codes": [ { "code": "A00", "description": "Cholera", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A01", "description": "Typhoid and paratyphoid fevers", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A02.0", "description": "Salmonella enteritis", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A03", "description": "Shigellosis", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A04", "description": "Other bacterial intestinal infections", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A05", "description": "Other bacterial foodborne intoxications, not elsewhere classified", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A06.0", "description": "Acute amoebic dysentery", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A06.1", "description": "Chronic intestinal amoebiasis", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A06.2", "description": "Amoebic nondysenteric colitis", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A06.3", "description": "Amoeboma of intestine", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A07", "description": "Other protozoal intestinal diseases", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A08", "description": "Viral and other specified intestinal infections", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A09", "description": "Other gastroenteritis and colitis of infectious and unspecified origin", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A18.3", "description": "Tuberculosis of intestines, peritoneum and mesenteric glands", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A21.3", "description": "Gastrointestinal tularaemia", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "A22.2", "description": "Gastrointestinal anthrax", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "B05.4", "description": "Measles with intestinal complications", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "B46.2", "description": "Gastrointestinal mucormycosis", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "B78.0", "description": "Intestinal strongyloidiasis", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "B81", "description": "Other intestinal helminthiases, not elsewhere classified", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "B82", "description": "Unspecified intestinal parasitism", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "B98.0", "description": "Helicobacter pylori [H.pylori] as the cause of diseases classified to other chapters", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "K23.0", "description": "Tuberculous oesophagitis", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "K23.1", "description": "Megaoesophagus in Chagas' disease", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "K63.0", "description": "Abscess of intestine", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } }, { "code": "K93.0", "description": "Tuberculous disorders of intestines, peritoneum and mesenteric glands", "attributes": { "Disease": "Infections of the digestive system", "Category": "Diagnosis of Infections of the digestive system" } } ] } ], "status": 2, "doi": "https://doi.org/10.48533/s8yd-cq46", "is_deleted": null, "publish_status": 2, "owner": "ieuan.scanlon", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 306, "version_name": "Infections of the digestive system", "version_date": "2021-10-06T16:05:26.638742Z", "is_published": true, "is_latest": true } ] } ]