[
  {
    "phenotype_id": "PH175",
    "phenotype_version_id": 350,
    "name": "Gastritis and duodenitis",
    "definition": "At the specified date, a patient is defined as having had 'Gastritis and duodenitis' and duodenitis IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. 'Gastritis and duodenitis' and duodenitis diagnosis or history of diagnosis or procedure during a consultation \n\nOR\nSecondary care\n\n\n1. ALL diagnoses of 'Gastritis and duodenitis' and duodenitis or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1016/S2589-7500(19)30012-3",
        "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:06:23.399417Z",
    "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A",
    "collections": [
      {
        "name": "CALIBER",
        "value": 21
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:06:23.399446Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Gastritis-and-duodenitis---afd6b320-1784-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Gastritis-and-duodenitis.cwl",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      },
      {
        "name": "HES Admitted Patient Care data for CPRD GOLD",
        "value": 9,
        "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43",
        "url": "https://healthdatagateway.org/en/dataset/674",
        "datasource_id": 674
      }
    ],
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v2",
        "value": 5
      },
      {
        "name": "Med codes",
        "value": 8
      }
    ],
    "event_date_range": "01/01/1999 - 01/07/2016",
    "concept_information": [
      {
        "concept_id": 1184,
        "concept_version_id": 3507,
        "concept_name": "Gastritis and duodenitis - Primary care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH175",
        "phenotype_version_id": 350,
        "phenotype_name": "Gastritis and duodenitis",
        "code_attribute_header": [
          "Disease",
          "Medcode",
          "Category"
        ],
        "codes": [
          {
            "code": "A074313",
            "description": "Helicobacter gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "14928.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J11z.11",
            "description": "Gastric erosions",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "2877.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J123.00",
            "description": "Duodenal erosion",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "3462.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J15..00",
            "description": "Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "3341.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J150.00",
            "description": "Acute gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "5635.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J150000",
            "description": "Acute haemorrhagic gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "29492.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J151.00",
            "description": "Chronic gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "2936.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J151000",
            "description": "Chronic atrophic gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "15025.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J151100",
            "description": "Chronic inflammatory gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "11497.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J151200",
            "description": "Chronic superficial gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "38638.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J151z00",
            "description": "Chronic gastritis NOS",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "19190.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J152.00",
            "description": "Gastric mucosal hypertrophy",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "14787.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J153.00",
            "description": "Alcoholic gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "4506.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J154.00",
            "description": "Other specified gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "5858.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J154000",
            "description": "Allergic gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "33820.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J154100",
            "description": "Bile induced gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "15348.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J154200",
            "description": "Irritant gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "11519.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J154300",
            "description": "Corrosive gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "27763.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J154400",
            "description": "Helicobacter gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "10906.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J154z00",
            "description": "Other specified gastritis NOS",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "18260.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J155.00",
            "description": "Gastritis unspecified",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "1138.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J156.00",
            "description": "Gastroduodenitis unspecified",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "25544.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J157.00",
            "description": "Duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "376.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J15z.00",
            "description": "Gastritis and duodenitis NOS",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "9731.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "J4z0.00",
            "description": "Non-infective gastritis NOS",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "6420.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "Jyu1200",
            "description": "[X]Other acute gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "73154.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "Jyu1300",
            "description": "[X]Other gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "45769.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          },
          {
            "code": "ZV65316",
            "description": "[V]Dietary counselling in gastritis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Medcode": "18596.0",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          }
        ]
      },
      {
        "concept_id": 1185,
        "concept_version_id": 3509,
        "concept_name": "Gastritis and duodenitis - Primary care",
        "coding_system": {
          "id": 8,
          "name": "Med codes",
          "description": "Med codes"
        },
        "phenotype_id": "PH175",
        "phenotype_version_id": 350,
        "phenotype_name": "Gastritis and duodenitis",
        "code_attribute_header": [
          "Disease",
          "ReadcodeDescr",
          "Readcode"
        ],
        "codes": [
          {
            "code": "10906.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Helicobacter gastritis",
              "Readcode": "J154400"
            }
          },
          {
            "code": "1138.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Gastritis unspecified",
              "Readcode": "J155.00"
            }
          },
          {
            "code": "11497.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Chronic inflammatory gastritis",
              "Readcode": "J151100"
            }
          },
          {
            "code": "11519.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Irritant gastritis",
              "Readcode": "J154200"
            }
          },
          {
            "code": "14787.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Gastric mucosal hypertrophy",
              "Readcode": "J152.00"
            }
          },
          {
            "code": "14928.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Helicobacter gastritis",
              "Readcode": "A074313"
            }
          },
          {
            "code": "15025.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Chronic atrophic gastritis",
              "Readcode": "J151000"
            }
          },
          {
            "code": "15348.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Bile induced gastritis",
              "Readcode": "J154100"
            }
          },
          {
            "code": "18260.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Other specified gastritis NOS",
              "Readcode": "J154z00"
            }
          },
          {
            "code": "18596.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "[V]Dietary counselling in gastritis",
              "Readcode": "ZV65316"
            }
          },
          {
            "code": "19190.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Chronic gastritis NOS",
              "Readcode": "J151z00"
            }
          },
          {
            "code": "25544.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Gastroduodenitis unspecified",
              "Readcode": "J156.00"
            }
          },
          {
            "code": "27763.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Corrosive gastritis",
              "Readcode": "J154300"
            }
          },
          {
            "code": "2877.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Gastric erosions",
              "Readcode": "J11z.11"
            }
          },
          {
            "code": "2936.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Chronic gastritis",
              "Readcode": "J151.00"
            }
          },
          {
            "code": "29492.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Acute haemorrhagic gastritis",
              "Readcode": "J150000"
            }
          },
          {
            "code": "3341.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Gastritis and duodenitis",
              "Readcode": "J15..00"
            }
          },
          {
            "code": "33820.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Allergic gastritis",
              "Readcode": "J154000"
            }
          },
          {
            "code": "3462.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Duodenal erosion",
              "Readcode": "J123.00"
            }
          },
          {
            "code": "376.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Duodenitis",
              "Readcode": "J157.00"
            }
          },
          {
            "code": "38638.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Chronic superficial gastritis",
              "Readcode": "J151200"
            }
          },
          {
            "code": "4506.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Alcoholic gastritis",
              "Readcode": "J153.00"
            }
          },
          {
            "code": "45769.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "[X]Other gastritis",
              "Readcode": "Jyu1300"
            }
          },
          {
            "code": "5635.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Acute gastritis",
              "Readcode": "J150.00"
            }
          },
          {
            "code": "5858.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Other specified gastritis",
              "Readcode": "J154.00"
            }
          },
          {
            "code": "6420.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Non-infective gastritis NOS",
              "Readcode": "J4z0.00"
            }
          },
          {
            "code": "73154.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "[X]Other acute gastritis",
              "Readcode": "Jyu1200"
            }
          },
          {
            "code": "9731.0",
            "description": "Diagnosis of Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "ReadcodeDescr": "Gastritis and duodenitis NOS",
              "Readcode": "J15z.00"
            }
          }
        ]
      },
      {
        "concept_id": 1186,
        "concept_version_id": 3511,
        "concept_name": "Gastritis and duodenitis - Secondary care - Diagnoses",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH175",
        "phenotype_version_id": 350,
        "phenotype_name": "Gastritis and duodenitis",
        "code_attribute_header": [
          "Disease",
          "Category"
        ],
        "codes": [
          {
            "code": "K29",
            "description": "Gastritis and duodenitis",
            "attributes": {
              "Disease": "Gastritis and duodenitis",
              "Category": "Diagnosis of Gastritis and duodenitis"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/7681-8q47",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 350,
        "version_name": "Gastritis and duodenitis",
        "version_date": "2021-10-06T16:06:23.428371Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]