[
  {
    "phenotype_id": "PH214",
    "phenotype_version_id": 428,
    "name": "Mycoses",
    "definition": "At the specified date, a patient is defined as having had Mycoses IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nSecondary care\n\n\n1. ALL diagnoses of Mycoses or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1016/S2589-7500(19)30012-3",
        "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:08:03.363798Z",
    "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A",
    "collections": [
      {
        "name": "CALIBER",
        "value": 21
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:08:03.363825Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Mycoses---31a8b280-1795-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Mycoses.cwl",
    "data_sources": [
      {
        "name": "HES Admitted Patient Care data for CPRD GOLD",
        "value": 9,
        "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43",
        "url": "https://healthdatagateway.org/en/dataset/674",
        "datasource_id": 674
      }
    ],
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      }
    ],
    "event_date_range": "01/01/1999 - 01/07/2016",
    "concept_information": [
      {
        "concept_id": 1295,
        "concept_version_id": 3729,
        "concept_name": "Mycoses - Secondary care - Diagnoses",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH214",
        "phenotype_version_id": 428,
        "phenotype_name": "Mycoses",
        "code_attribute_header": [
          "Disease",
          "Category"
        ],
        "codes": [
          {
            "code": "B20.4",
            "description": "HIV disease resulting in candidiasis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B20.5",
            "description": "HIV disease resulting in other mycoses",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B20.6",
            "description": "HIV disease resulting in Pneumocystis jirovecii pneumonia",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B35",
            "description": "Dermatophytosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B36",
            "description": "Other superficial mycoses",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B37",
            "description": "Candidiasis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B38",
            "description": "Coccidioidomycosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B39",
            "description": "Histoplasmosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B40",
            "description": "Blastomycosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B41",
            "description": "Paracoccidioidomycosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B42",
            "description": "Sporotrichosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B43",
            "description": "Chromomycosis and phaeomycotic abscess",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B44",
            "description": "Aspergillosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B45",
            "description": "Cryptococcosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B46",
            "description": "Zygomycosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B47",
            "description": "Mycetoma",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B48",
            "description": "Other mycoses, not elsewhere classified",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B49",
            "description": "Unspecified mycosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "B59",
            "description": "Pneumocystosis",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "G02.1",
            "description": "Meningitis in mycoses",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "H62.2",
            "description": "Otitis externa in mycoses",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "J17.2",
            "description": "Pneumonia in mycoses",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          },
          {
            "code": "M01.6",
            "description": "Arthritis in mycoses",
            "attributes": {
              "Disease": "Mycoses",
              "Category": "Diagnosis of mycoses"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/mrxj-m978",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 428,
        "version_name": "Mycoses",
        "version_date": "2021-10-06T16:08:03.390800Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]