[
  {
    "phenotype_id": "PH238",
    "phenotype_version_id": 476,
    "name": "Pilonidal cyst/sinus",
    "definition": "At the specified date, a patient is defined as having had 'Pilonidal cyst/sinus' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. 'Pilonidal cyst/sinus' diagnosis or history of diagnosis during a consultation \n\nOR\nSecondary care (ICD10)\n\n\n1. ALL diagnoses of 'Pilonidal cyst/sinus' or history of diagnosis during a hospitalization\nOR\nSecondary care (OPCS4)\n\n\n1. ALL procedures for 'Pilonidal cyst/sinus' during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1016/S2589-7500(19)30012-3",
        "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:09:11.451661Z",
    "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A",
    "collections": [
      {
        "name": "CALIBER",
        "value": 21
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:09:11.451688Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      },
      {
        "name": "HES Admitted Patient Care data for CPRD GOLD",
        "value": 9,
        "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43",
        "url": "https://healthdatagateway.org/en/dataset/674",
        "datasource_id": 674
      }
    ],
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v2",
        "value": 5
      },
      {
        "name": "OPCS4 codes",
        "value": 7
      },
      {
        "name": "Med codes",
        "value": 8
      }
    ],
    "event_date_range": "01/01/1999 - 01/07/2016",
    "concept_information": [
      {
        "concept_id": 1357,
        "concept_version_id": 3853,
        "concept_name": "Pilonidal cyst/sinus - Primary care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH238",
        "phenotype_version_id": 476,
        "phenotype_name": "Pilonidal cyst/sinus",
        "code_attribute_header": [
          "Disease",
          "Medcode",
          "Category"
        ],
        "codes": [
          {
            "code": "773B.00",
            "description": "Pilonidal sinus operations",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "1488.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773B000",
            "description": "Excision of pilonidal sinus and Z plasty skin flap HFQ",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "57103.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773B100",
            "description": "Excision of pilonidal sinus and skin flap NEC",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "31272.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773B200",
            "description": "Excision of pilonidal sinus and skin graft HFQ",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "63149.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773B300",
            "description": "Excision of pilonidal sinus and suture HFQ",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "33570.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773B400",
            "description": "Excision of pilonidal sinus NEC",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "1421.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773B500",
            "description": "Laying open of track of pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "28472.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773B700",
            "description": "Drainage of pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "16096.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773B800",
            "description": "Injection of radiocontrast substance into pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "71740.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773B900",
            "description": "Destruction of pilonidal sinus NEC",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "57629.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773BA00",
            "description": "Other specified excision of pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "61171.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773Bx00",
            "description": "Excision of pilonidal sinus NOS",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "3773.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773By00",
            "description": "Other specified operation on pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "34294.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "773Bz00",
            "description": "Operation on pilonidal sinus NOS",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "1110.0",
              "Category": "Procedure for Pilonidal cyst/sinus"
            }
          },
          {
            "code": "M06..00",
            "description": "Pilonidal sinus/cyst",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "5077.0",
              "Category": "Diagnosis of Pilonidal cyst/sinus"
            }
          },
          {
            "code": "M060.00",
            "description": "Pilonidal cyst with abscess",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "1420.0",
              "Category": "Diagnosis of Pilonidal cyst/sinus"
            }
          },
          {
            "code": "M061.00",
            "description": "Pilonidal cyst with no abscess",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "33891.0",
              "Category": "Diagnosis of Pilonidal cyst/sinus"
            }
          },
          {
            "code": "M062.00",
            "description": "Pilonidal sinus with abscess",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "26075.0",
              "Category": "Diagnosis of Pilonidal cyst/sinus"
            }
          },
          {
            "code": "M063.00",
            "description": "Pilonidal sinus without abscess",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "1109.0",
              "Category": "Diagnosis of Pilonidal cyst/sinus"
            }
          },
          {
            "code": "M06z.00",
            "description": "Pilonidal sinus/cyst NOS",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Medcode": "5429.0",
              "Category": "Diagnosis of Pilonidal cyst/sinus"
            }
          }
        ]
      },
      {
        "concept_id": 1358,
        "concept_version_id": 3855,
        "concept_name": "Pilonidal cyst/sinus - Primary care",
        "coding_system": {
          "id": 8,
          "name": "Med codes",
          "description": "Med codes"
        },
        "phenotype_id": "PH238",
        "phenotype_version_id": 476,
        "phenotype_name": "Pilonidal cyst/sinus",
        "code_attribute_header": [
          "Disease",
          "ReadcodeDescr",
          "Readcode"
        ],
        "codes": [
          {
            "code": "1109.0",
            "description": "Diagnosis of Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Pilonidal sinus without abscess",
              "Readcode": "M063.00"
            }
          },
          {
            "code": "1110.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Operation on pilonidal sinus NOS",
              "Readcode": "773Bz00"
            }
          },
          {
            "code": "1420.0",
            "description": "Diagnosis of Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Pilonidal cyst with abscess",
              "Readcode": "M060.00"
            }
          },
          {
            "code": "1421.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Excision of pilonidal sinus NEC",
              "Readcode": "773B400"
            }
          },
          {
            "code": "1488.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Pilonidal sinus operations",
              "Readcode": "773B.00"
            }
          },
          {
            "code": "16096.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Drainage of pilonidal sinus",
              "Readcode": "773B700"
            }
          },
          {
            "code": "26075.0",
            "description": "Diagnosis of Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Pilonidal sinus with abscess",
              "Readcode": "M062.00"
            }
          },
          {
            "code": "28472.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Laying open of track of pilonidal sinus",
              "Readcode": "773B500"
            }
          },
          {
            "code": "31272.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Excision of pilonidal sinus and skin flap NEC",
              "Readcode": "773B100"
            }
          },
          {
            "code": "33570.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Excision of pilonidal sinus and suture HFQ",
              "Readcode": "773B300"
            }
          },
          {
            "code": "33891.0",
            "description": "Diagnosis of Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Pilonidal cyst with no abscess",
              "Readcode": "M061.00"
            }
          },
          {
            "code": "34294.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Other specified operation on pilonidal sinus",
              "Readcode": "773By00"
            }
          },
          {
            "code": "3773.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Excision of pilonidal sinus NOS",
              "Readcode": "773Bx00"
            }
          },
          {
            "code": "5077.0",
            "description": "Diagnosis of Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Pilonidal sinus/cyst",
              "Readcode": "M06..00"
            }
          },
          {
            "code": "5429.0",
            "description": "Diagnosis of Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Pilonidal sinus/cyst NOS",
              "Readcode": "M06z.00"
            }
          },
          {
            "code": "57103.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Excision of pilonidal sinus and Z plasty skin flap HFQ",
              "Readcode": "773B000"
            }
          },
          {
            "code": "57629.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Destruction of pilonidal sinus NEC",
              "Readcode": "773B900"
            }
          },
          {
            "code": "61171.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Other specified excision of pilonidal sinus",
              "Readcode": "773BA00"
            }
          },
          {
            "code": "63149.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Excision of pilonidal sinus and skin graft HFQ",
              "Readcode": "773B200"
            }
          },
          {
            "code": "71740.0",
            "description": "Procedure for Pilonidal cyst/sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "ReadcodeDescr": "Injection of radiocontrast substance into pilonidal sinus",
              "Readcode": "773B800"
            }
          }
        ]
      },
      {
        "concept_id": 1359,
        "concept_version_id": 3857,
        "concept_name": "Pilonidal cyst/sinus - Secondary care - Diagnoses",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH238",
        "phenotype_version_id": 476,
        "phenotype_name": "Pilonidal cyst/sinus",
        "code_attribute_header": [
          "Disease",
          "Category"
        ],
        "codes": [
          {
            "code": "L05",
            "description": "Pilonidal cyst",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Diagnosis of Pilonidal cyst/sinus"
            }
          }
        ]
      },
      {
        "concept_id": 1360,
        "concept_version_id": 3859,
        "concept_name": "Pilonidal cyst/sinus - Secondary care - Procedures",
        "coding_system": {
          "id": 7,
          "name": "OPCS4 codes",
          "description": "OPCS4 codes"
        },
        "phenotype_id": "PH238",
        "phenotype_version_id": 476,
        "phenotype_name": "Pilonidal cyst/sinus",
        "code_attribute_header": [
          "Disease",
          "Category"
        ],
        "codes": [
          {
            "code": "H59.1",
            "description": "Excision of pilonidal sinus and Z plasty skin flap HFQ",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H59.2",
            "description": "Excision of pilonidal sinus and skin flap NEC",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H59.3",
            "description": "Excision of pilonidal sinus and skin graft HFQ",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H59.4",
            "description": "Excision of pilonidal sinus and suture HFQ",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H59.8",
            "description": "Other specified excision of pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H59.9",
            "description": "Unspecified excision of pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H60.1",
            "description": "Destruction of pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H60.2",
            "description": "Laying open of pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H60.3",
            "description": "Drainage of pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H60.4",
            "description": "Injection of radiocontrast substance into pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H60.8",
            "description": "Other specified other operations on pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          },
          {
            "code": "H60.9",
            "description": "Unspecified other operations on pilonidal sinus",
            "attributes": {
              "Disease": "Pilonidal cyst/sinus",
              "Category": "Procedure for Pilonidal cyst"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/807g-wr22",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 476,
        "version_name": "Pilonidal cyst/sinus",
        "version_date": "2021-10-06T16:09:11.485269Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]