[
  {
    "phenotype_id": "PH2385",
    "phenotype_version_id": 5677,
    "name": "COVID19 testing, diagnoses and related activity codes (obsolete)",
    "definition": "This codelist was taken from [OpenCodelists](https://www.opencodelists.org/), created by [OpenSAFELY](https://www.opensafely.org/). We recommend viewing this Phenotype on the OpenCodelist website to view the most recent version.\n\n\nTaken from the `GDPPRC19ACTIVITY_COD` refset published by NHSD.\n\n\n© University of Oxford for the Bennett Institute for Applied Data Science 2025\\. This work may be copied freely for non\\-commercial research and study.\n\n",
    "implementation": null,
    "publications": null,
    "validation": null,
    "citation_requirements": null,
    "created": "2026-01-26T22:11:27.588882Z",
    "author": "NHSD Primary Care Domain Refsets",
    "collections": [
      {
        "name": "OpenCodelist",
        "value": 31
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": {
      "id": 1,
      "slug": "opensafely",
      "name": "OpenSAFELY"
    },
    "world_access": 1,
    "updated": "2026-01-26T22:11:27.580957Z",
    "references": [],
    "signed_off": [],
    "methodology": "",
    "coding_system": [
      {
        "name": "SNOMED  CT codes",
        "value": 9
      }
    ],
    "open_codelist_id": "nhsd-primary-care-domain-refsets/covid19-testing-diagnoses-and-related-activity-codes",
    "source_reference": "https://www.opencodelists.org/codelist/nhsd-primary-care-domain-refsets/covid19-testing-diagnoses-and-related-activity-codes/20241205",
    "concept_information": [
      {
        "concept_id": 5854,
        "concept_version_id": 13339,
        "concept_name": "nhsd-primary-care-domain-refsets/covid19-testing-diagnoses-and-related-activity-codes/20241205",
        "coding_system": {
          "id": 9,
          "name": "SNOMED  CT codes",
          "description": "SNOMED CT codes"
        },
        "phenotype_id": "PH2385",
        "phenotype_version_id": 5677,
        "phenotype_name": "COVID19 testing, diagnoses and related activity codes (obsolete)",
        "code_attribute_header": [],
        "codes": [
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            "code": "1008541000000105",
            "description": "Coronavirus ribonucleic acid detection assay",
            "attributes": null
          },
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            "description": "Viremia caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1029481000000103",
            "description": "Coronavirus nucleic acid detection assay",
            "attributes": null
          },
          {
            "code": "1119302008",
            "description": "Acute disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1119306006",
            "description": "Multisystem inflammatory syndrome in adults",
            "attributes": null
          },
          {
            "code": "1119350007",
            "description": "Administration of vaccine product containing only severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid",
            "attributes": null
          },
          {
            "code": "1142180003",
            "description": "Adverse reaction to component of vaccine product containing Severe acute respiratory syndrome coronavirus 2 antigen or Severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid",
            "attributes": null
          },
          {
            "code": "1142181004",
            "description": "Adverse reaction to component of vaccine product containing only severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid",
            "attributes": null
          },
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            "description": "Adverse reaction to component of vaccine product containing only severe acute respiratory syndrome coronavirus 2 antigen",
            "attributes": null
          },
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            "description": "Administration of first dose of vaccine product containing only severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid",
            "attributes": null
          },
          {
            "code": "1144998002",
            "description": "Administration of second dose of vaccine product containing only severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid",
            "attributes": null
          },
          {
            "code": "1145003007",
            "description": "Hypersensitivity to vaccine product containing only severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid",
            "attributes": null
          },
          {
            "code": "1145022003",
            "description": "Severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid vaccine contraindicated",
            "attributes": null
          },
          {
            "code": "1145023008",
            "description": "Severe acute respiratory syndrome coronavirus 2 antigen vaccine contraindicated",
            "attributes": null
          },
          {
            "code": "1145029007",
            "description": "Severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid vaccination not indicated",
            "attributes": null
          },
          {
            "code": "1145030002",
            "description": "Severe acute respiratory syndrome coronavirus 2 antigen vaccination not indicated",
            "attributes": null
          },
          {
            "code": "1145032005",
            "description": "Severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid vaccine declined",
            "attributes": null
          },
          {
            "code": "1145033000",
            "description": "Severe acute respiratory syndrome coronavirus 2 antigen vaccine declined",
            "attributes": null
          },
          {
            "code": "1145034006",
            "description": "Second dose of severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid vaccine declined",
            "attributes": null
          },
          {
            "code": "1145035007",
            "description": "Second dose of severe acute respiratory syndrome coronavirus 2 messenger ribonucleic acid vaccine contraindicated",
            "attributes": null
          },
          {
            "code": "1153537004",
            "description": "Antigen of inactivated whole severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1156256003",
            "description": "Adverse reaction to component of vaccine product against severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1157045004",
            "description": "Antigen of severe acute respiratory syndrome coronavirus 2 protein",
            "attributes": null
          },
          {
            "code": "1157110005",
            "description": "Severe acute respiratory syndrome coronavirus 2 non-replicating viral vector vaccine contraindicated",
            "attributes": null
          },
          {
            "code": "1157170002",
            "description": "Tozinameran",
            "attributes": null
          },
          {
            "code": "1157196000",
            "description": "Administration of vaccine product containing only inactivated whole severe acute respiratory syndrome coronavirus 2 antigen",
            "attributes": null
          },
          {
            "code": "1157197009",
            "description": "Administration of second dose of vaccine product containing only inactivated whole severe acute respiratory syndrome coronavirus 2 antigen",
            "attributes": null
          },
          {
            "code": "1157198004",
            "description": "Inactivated whole severe acute respiratory syndrome coronavirus 2 antigen vaccine contraindicated",
            "attributes": null
          },
          {
            "code": "1162645008",
            "description": "Administration of vaccine product containing only severe acute respiratory syndrome coronavirus 2 recombinant spike protein antigen",
            "attributes": null
          },
          {
            "code": "1162646009",
            "description": "Administration of second dose of vaccine product containing only severe acute respiratory syndrome coronavirus 2 recombinant spike protein antigen",
            "attributes": null
          },
          {
            "code": "119731000146105",
            "description": "Cardiomyopathy due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "119741000146102",
            "description": "Conjunctivitis due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "119751000146104",
            "description": "Fever caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "119981000146107",
            "description": "Dyspnea caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "120814005",
            "description": "Antibody to Coronavirus",
            "attributes": null
          },
          {
            "code": "1217296006",
            "description": "Disease caused by severe acute respiratory syndrome coronavirus 2 following administration of vaccine product against severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "121973000",
            "description": "Measurement of coronavirus antibody",
            "attributes": null
          },
          {
            "code": "1240381000000105",
            "description": "Severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240391000000107",
            "description": "Antigen of severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240401000000105",
            "description": "Antibody to severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240411000000107",
            "description": "Ribonucleic acid of severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240421000000101",
            "description": "Serotype severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
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            "description": "Exposure to severe acute respiratory syndrome coronavirus 2 infection",
            "attributes": null
          },
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            "description": "Close exposure to severe acute respiratory syndrome coronavirus 2 infection",
            "attributes": null
          },
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            "description": "Measurement of severe acute respiratory syndrome coronavirus 2 antibody",
            "attributes": null
          },
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            "description": "Measurement of severe acute respiratory syndrome coronavirus 2 antigen",
            "attributes": null
          },
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            "code": "1240491000000103",
            "description": "Severe acute respiratory syndrome coronavirus 2 vaccination",
            "attributes": null
          },
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            "code": "1240591000000102",
            "description": "Severe acute respiratory syndrome coronavirus 2 not detected",
            "attributes": null
          },
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            "code": "1240631000000102",
            "description": "Did not attend severe acute respiratory syndrome coronavirus 2 vaccination",
            "attributes": null
          },
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            "description": "Severe acute respiratory syndrome coronavirus 2 vaccination declined",
            "attributes": null
          },
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            "description": "Severe acute respiratory syndrome coronavirus 2 vaccination contraindicated",
            "attributes": null
          },
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            "description": "Severe acute respiratory syndrome coronavirus 2 vaccination not indicated",
            "attributes": null
          },
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            "description": "Severe acute respiratory syndrome coronavirus 2 vaccination not done",
            "attributes": null
          },
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            "description": "Severe acute respiratory syndrome coronavirus 2 vaccine not available",
            "attributes": null
          },
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            "description": "Educated about severe acute respiratory syndrome coronavirus 2 infection",
            "attributes": null
          },
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            "code": "1240721000000105",
            "description": "Advice given about severe acute respiratory syndrome coronavirus 2 infection",
            "attributes": null
          },
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            "description": "Advice given about severe acute respiratory syndrome coronavirus 2 by telephone",
            "attributes": null
          },
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            "code": "1240781000000106",
            "description": "Severe acute respiratory syndrome coronavirus 2 vaccination invitation short message service text message sent",
            "attributes": null
          },
          {
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            "description": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 using microchip real time polymerase chain reaction",
            "attributes": null
          },
          {
            "code": "1300671000000104",
            "description": "Coronavirus disease 19 severity scale",
            "attributes": null
          },
          {
            "code": "1320971000000102",
            "description": "Taking of swab for severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
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            "description": "Swab for severe acute respiratory syndrome coronavirus 2 taken by subject completed",
            "attributes": null
          },
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            "code": "1321041000000101",
            "description": "Swab for severe acute respiratory syndrome coronavirus 2 taken by subject offered",
            "attributes": null
          },
          {
            "code": "1321051000000103",
            "description": "Swab for severe acute respiratory syndrome coronavirus 2 taken by healthcare professional",
            "attributes": null
          },
          {
            "code": "1321061000000100",
            "description": "Signposting to National Health Service online isolation note service",
            "attributes": null
          },
          {
            "code": "1321071000000107",
            "description": "Has National Health Service digital isolation note",
            "attributes": null
          },
          {
            "code": "1321081000000109",
            "description": "Self-isolation note issued to patient",
            "attributes": null
          },
          {
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            "description": "Household isolation note issued to patient",
            "attributes": null
          },
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            "description": "Self-isolation to prevent exposure of community to contagion",
            "attributes": null
          },
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            "description": "Reverse isolation of household to prevent exposure of uninfected subject to contagion",
            "attributes": null
          },
          {
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            "description": "Reverse self-isolation of uninfected subject to prevent exposure to contagion",
            "attributes": null
          },
          {
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            "description": "Household isolation to prevent exposure of community to contagion",
            "attributes": null
          },
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            "description": "Provision of advice, assessment or treatment limited due to coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 pandemic",
            "attributes": null
          },
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            "code": "1321221000000103",
            "description": "Consultation via video conference not available",
            "attributes": null
          },
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            "code": "1321231000000101",
            "description": "Signposting to coronavirus disease 19 Home Management Service",
            "attributes": null
          },
          {
            "code": "1321271000000104",
            "description": "Swab specimen from oropharynx",
            "attributes": null
          },
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            "description": "Combined swab specimen from oropharynx and nasopharynx",
            "attributes": null
          },
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            "description": "Severe acute respiratory syndrome coronavirus 2 species detection test",
            "attributes": null
          },
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            "description": "Newborn blood spot screening declined due to epidemic",
            "attributes": null
          },
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            "description": "Newborn blood spot screening delayed due to epidemic",
            "attributes": null
          },
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            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin G detected",
            "attributes": null
          },
          {
            "code": "1321551000000106",
            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin M detected",
            "attributes": null
          },
          {
            "code": "1321561000000109",
            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin M not detected",
            "attributes": null
          },
          {
            "code": "1321571000000102",
            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin G not detected",
            "attributes": null
          },
          {
            "code": "1321581000000100",
            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin M detection result unknown",
            "attributes": null
          },
          {
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            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin G detection result equivocal",
            "attributes": null
          },
          {
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            "description": "Severe acute respiratory syndrome coronavirus 2 immunity status equivocal",
            "attributes": null
          },
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            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin M detection result equivocal",
            "attributes": null
          },
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            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin G detection result unknown",
            "attributes": null
          },
          {
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            "description": "Severe acute respiratory syndrome coronavirus 2 immunity status unknown",
            "attributes": null
          },
          {
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            "description": "Severe acute respiratory syndrome coronavirus 2 ribonucleic acid detection result equivocal",
            "attributes": null
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            "description": "Severe acute respiratory syndrome coronavirus 2 ribonucleic acid detection result unknown",
            "attributes": null
          },
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            "description": "Does not have immunity to severe acute respiratory syndrome coronavirus 2",
            "attributes": null
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            "description": "Point of care severe acute respiratory syndrome coronavirus 2 species detection test",
            "attributes": null
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            "description": "Central laboratory severe acute respiratory syndrome coronavirus 2 species detection test",
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            "attributes": null
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            "description": "Central laboratory measurement of severe acute respiratory syndrome coronavirus 2 antibody",
            "attributes": null
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            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin A detected",
            "attributes": null
          },
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            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin A detection result equivocal",
            "attributes": null
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            "attributes": null
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            "description": "Severe acute respiratory syndrome coronavirus 2 immunoglobulin A not detected",
            "attributes": null
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            "description": "Exposure to confirmed case of severe acute respiratory syndrome coronavirus 2 infection",
            "attributes": null
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            "description": "Exposure to suspected case of severe acute respiratory syndrome coronavirus 2 infection",
            "attributes": null
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            "description": "Peripheral blood oxygen saturation level on room air on exertion decreased",
            "attributes": null
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            "description": "Provision of advice, assessment or treatment delayed due to coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 pandemic",
            "attributes": null
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            "description": "Peripheral blood oxygen saturation level on supplemental oxygen on exertion decreased",
            "attributes": null
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            "attributes": null
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            "description": "Peripheral blood oxygen saturation level on supplemental oxygen on exertion unchanged",
            "attributes": null
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            "description": "Assessment using 1-minute sit-to-stand test",
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            "description": "1-minute sit-to-stand test score",
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            "description": "Recently performed a healthcare related procedure",
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            "description": "Recently performed insertion of Guedel airway",
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            "description": "Recently performed a bronchoscopy",
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            "description": "Recently performed a gastroscopy with open suctioning of respiratory tract",
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            "description": "Recently performed a throat examination using tongue depressor",
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            "description": "Recently performed a dysphagia assessment",
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            "description": "Recently performed chest compressions",
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            "description": "Recently performed administration of high frequency oscillatory ventilation",
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            "description": "Recently performed administration of high-flow nasal cannula oxygen therapy",
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            "description": "Recently performed a nasopharyngeal swab procedure",
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            "description": "Recently performed insertion of nasogastric tube",
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            "code": "1322321000000104",
            "description": "Recently performed removal of nasal foreign body",
            "attributes": null
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            "description": "Recently performed an incision of trachea",
            "attributes": null
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          {
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            "description": "Recently performed an insertion of tracheostomy tube",
            "attributes": null
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            "description": "Recently performed a removal of tracheostomy tube",
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            "description": "Assessment using exertional desaturation test",
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            "description": "Recently performed administration of pressurised humidified oxygen therapy",
            "attributes": null
          },
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            "description": "Recently performed a dental ultrasonic scaling procedure",
            "attributes": null
          },
          {
            "code": "1322411000000101",
            "description": "Recently performed a respiratory physiotherapy procedure",
            "attributes": null
          },
          {
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            "description": "Recently performed a change of tracheostomy tube",
            "attributes": null
          },
          {
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            "description": "Recently performed an emergency tracheostomy",
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            "description": "Recently performed administration of medication via nebuliser",
            "attributes": null
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            "description": "Recently performed a dental sonic scaling procedure",
            "attributes": null
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            "description": "Recently performed a dental air polishing procedure",
            "attributes": null
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            "description": "Recently performed a dental scale and polish procedure",
            "attributes": null
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            "description": "Recently performed administration of nitrous oxide and oxygen gas analgesia",
            "attributes": null
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            "description": "Recently performed oxygen administration by non-rebreather mask",
            "attributes": null
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            "description": "Recently performed a direct current defibrillation procedure",
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            "description": "Recently performed a dental air-water syringing procedure",
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            "description": "Recently performed a tooth preparation procedure using air turbine handpiece",
            "attributes": null
          },
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            "description": "Recently performed an endotracheal intubation",
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            "description": "Recently performed an extubation of trachea",
            "attributes": null
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            "description": "Recently performed a percutaneous tracheostomy",
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            "description": "Recently performed administration of oxygen by Venturi mask",
            "attributes": null
          },
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            "description": "Recently performed mobilisation with intent to cause cough",
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