[
  {
    "phenotype_id": "PH247",
    "phenotype_version_id": 494,
    "name": "Primary Malignancy_biliary tract",
    "definition": "At the specified date, a patient is defined as having had Primary Malignancy biliary tract IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. Primary Malignancy biliary tract diagnosis or history of diagnosis during a consultation \n\nOR\nSecondary care\n\n\n1. ALL diagnoses of Primary Malignancy biliary tract or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1016/S2589-7500(19)30012-3",
        "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:09:31.568208Z",
    "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A",
    "collections": [
      {
        "name": "CALIBER",
        "value": 21
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:09:31.568234Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Primary-Malignancy_biliary-tract---cb55f480-17a7-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Primary-Malignancy_biliary-tract.cwl",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      },
      {
        "name": "HES Admitted Patient Care data for CPRD GOLD",
        "value": 9,
        "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43",
        "url": "https://healthdatagateway.org/en/dataset/674",
        "datasource_id": 674
      }
    ],
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v2",
        "value": 5
      },
      {
        "name": "Med codes",
        "value": 8
      }
    ],
    "event_date_range": "01/01/1999 - 01/07/2016",
    "concept_information": [
      {
        "concept_id": 1385,
        "concept_version_id": 3909,
        "concept_name": "Primary Malignancy_biliary tract - Primary care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH247",
        "phenotype_version_id": 494,
        "phenotype_name": "Primary Malignancy_biliary tract",
        "code_attribute_header": [
          "Disease",
          "Medcode",
          "Category"
        ],
        "codes": [
          {
            "code": "B151.00",
            "description": "Malignant neoplasm of intrahepatic bile ducts",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "16915.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B151000",
            "description": "Malignant neoplasm of interlobular bile ducts",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "65124.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B151200",
            "description": "Malignant neoplasm of intrahepatic biliary passages",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "89593.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B151400",
            "description": "Malignant neoplasm of intrahepatic gall duct",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "58088.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B151z00",
            "description": "Malignant neoplasm of intrahepatic bile ducts NOS",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "61643.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B161.00",
            "description": "Malignant neoplasm of extrahepatic bile ducts",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "23433.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B161000",
            "description": "Malignant neoplasm of cystic duct",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "72445.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B161100",
            "description": "Malignant neoplasm of hepatic duct",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "52537.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B161200",
            "description": "Malignant neoplasm of common bile duct",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "7982.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B161211",
            "description": "Carcinoma common bile duct",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "36495.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B161300",
            "description": "Malignant neoplasm of sphincter of Oddi",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "105613.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B161z00",
            "description": "Malignant neoplasm of extrahepatic bile ducts NOS",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "74896.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B162.00",
            "description": "Malignant neoplasm of ampulla of Vater",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "10949.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "B163.00",
            "description": "Malignant neoplasm, overlapping lesion of biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "35039.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "BB5D100",
            "description": "[M]Cholangiocarcinoma",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "8711.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "BB5D111",
            "description": "[M]Bile duct carcinoma",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "40438.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "BB5D300",
            "description": "[M]Bile duct cystadenocarcinoma",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "41313.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "BB5D700",
            "description": "[M]Combined hepatocellular carcinoma and cholangiocarcinoma",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "107299.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "BB5D711",
            "description": "[M]Hepatocholangiocarcinoma",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Medcode": "110147.0",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          }
        ]
      },
      {
        "concept_id": 1386,
        "concept_version_id": 3911,
        "concept_name": "Primary Malignancy_biliary tract - Primary care",
        "coding_system": {
          "id": 8,
          "name": "Med codes",
          "description": "Med codes"
        },
        "phenotype_id": "PH247",
        "phenotype_version_id": 494,
        "phenotype_name": "Primary Malignancy_biliary tract",
        "code_attribute_header": [
          "Disease",
          "ReadcodeDescr",
          "Readcode"
        ],
        "codes": [
          {
            "code": "105613.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of sphincter of Oddi",
              "Readcode": "B161300"
            }
          },
          {
            "code": "107299.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "[M]Combined hepatocellular carcinoma and cholangiocarcinoma",
              "Readcode": "BB5D700"
            }
          },
          {
            "code": "10949.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of ampulla of Vater",
              "Readcode": "B162.00"
            }
          },
          {
            "code": "110147.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "[M]Hepatocholangiocarcinoma",
              "Readcode": "BB5D711"
            }
          },
          {
            "code": "16915.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of intrahepatic bile ducts",
              "Readcode": "B151.00"
            }
          },
          {
            "code": "23433.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of extrahepatic bile ducts",
              "Readcode": "B161.00"
            }
          },
          {
            "code": "35039.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm, overlapping lesion of biliary tract",
              "Readcode": "B163.00"
            }
          },
          {
            "code": "36495.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Carcinoma common bile duct",
              "Readcode": "B161211"
            }
          },
          {
            "code": "40438.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "[M]Bile duct carcinoma",
              "Readcode": "BB5D111"
            }
          },
          {
            "code": "41313.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "[M]Bile duct cystadenocarcinoma",
              "Readcode": "BB5D300"
            }
          },
          {
            "code": "52537.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of hepatic duct",
              "Readcode": "B161100"
            }
          },
          {
            "code": "58088.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of intrahepatic gall duct",
              "Readcode": "B151400"
            }
          },
          {
            "code": "61643.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of intrahepatic bile ducts NOS",
              "Readcode": "B151z00"
            }
          },
          {
            "code": "65124.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of interlobular bile ducts",
              "Readcode": "B151000"
            }
          },
          {
            "code": "72445.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of cystic duct",
              "Readcode": "B161000"
            }
          },
          {
            "code": "74896.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of extrahepatic bile ducts NOS",
              "Readcode": "B161z00"
            }
          },
          {
            "code": "7982.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of common bile duct",
              "Readcode": "B161200"
            }
          },
          {
            "code": "8711.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "[M]Cholangiocarcinoma",
              "Readcode": "BB5D100"
            }
          },
          {
            "code": "89593.0",
            "description": "Diagnosis of Primary Malignancy_biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "ReadcodeDescr": "Malignant neoplasm of intrahepatic biliary passages",
              "Readcode": "B151200"
            }
          }
        ]
      },
      {
        "concept_id": 1387,
        "concept_version_id": 3913,
        "concept_name": "Primary Malignancy_biliary tract - Secondary care - Diagnoses",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH247",
        "phenotype_version_id": 494,
        "phenotype_name": "Primary Malignancy_biliary tract",
        "code_attribute_header": [
          "Disease",
          "Category"
        ],
        "codes": [
          {
            "code": "C22.1",
            "description": "Malignant neoplasm: Intrahepatic bile duct carcinoma",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          },
          {
            "code": "C24",
            "description": "Malignant neoplasm of other and unspecified parts of biliary tract",
            "attributes": {
              "Disease": "Primary Malignancy_biliary tract",
              "Category": "Diagnosis of Primary Malignancy_biliary tract"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/gh11-dj30",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 494,
        "version_name": "Primary Malignancy_biliary tract",
        "version_date": "2021-10-06T16:09:31.596463Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]