[ { "phenotype_id": "PH260", "phenotype_version_id": 520, "name": "Primary Malignancy_Oesophageal", "definition": "At the specified date, a patient is defined as having had Primary Malignancy Oesophageal IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. Primary Malignancy_Oesophageal diagnosis or history of diagnosis during a consultation \n\nOR\nSecondary care\n\n\n1. ALL diagnoses of Primary Malignancy_Oesophageal or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n", "implementation": "", "publications": [ { "doi": "10.1016/S2589-7500(19)30012-3", "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3" } ], "validation": "", "citation_requirements": "", "created": "2021-10-06T16:10:05.672443Z", "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A", "collections": [ { "name": "CALIBER", "value": 21 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2021-10-06T16:10:05.672471Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Primary-Malignancy_Oesophageal---449dad60-17ad-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Primary-Malignancy_Oesophageal.cwl", "data_sources": [ { "name": "CPRD GOLD", "value": 5, "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f", "url": "https://healthdatagateway.org/en/dataset/694", "datasource_id": 694 }, { "name": "HES Admitted Patient Care data for CPRD GOLD", "value": 9, "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43", "url": "https://healthdatagateway.org/en/dataset/674", "datasource_id": 674 } ], "coding_system": [ { "name": "ICD10 codes", "value": 4 }, { "name": "Read codes v2", "value": 5 }, { "name": "Med codes", "value": 8 } ], "event_date_range": "01/01/1999 - 01/07/2016", "concept_information": [ { "concept_id": 1424, "concept_version_id": 3987, "concept_name": "Primary Malignancy_Oesophageal - Primary care", "coding_system": { "id": 5, "name": "Read codes v2", "description": "Read codes v2" }, "phenotype_id": "PH260", "phenotype_version_id": 520, "phenotype_name": "Primary Malignancy_Oesophageal", "code_attribute_header": [ "Disease", "Medcode", "Category" ], "codes": [ { "code": "B10..00", "description": "Malignant neoplasm of oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "1062.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B100.00", "description": "Malignant neoplasm of cervical oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "61695.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B101.00", "description": "Malignant neoplasm of thoracic oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "41362.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B102.00", "description": "Malignant neoplasm of abdominal oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "63470.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B103.00", "description": "Malignant neoplasm of upper third of oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "50789.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B104.00", "description": "Malignant neoplasm of middle third of oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "54171.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B105.00", "description": "Malignant neoplasm of lower third of oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "42416.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B106.00", "description": "Malignant neoplasm, overlapping lesion of oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "67497.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B107.00", "description": "Siewert type I adenocarcinoma", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "98142.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B10y.00", "description": "Malignant neoplasm of other specified part of oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "53591.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B10z.00", "description": "Malignant neoplasm of oesophagus NOS", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "30700.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "B10z.11", "description": "Oesophageal cancer", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "4865.0", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } }, { "code": "ZV10016", "description": "[V]Personal history of malignant neoplasm of oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Medcode": "51001.0", "Category": "History of Primary Malignancy_Oesophageal" } } ] }, { "concept_id": 1425, "concept_version_id": 3989, "concept_name": "Primary Malignancy_Oesophageal - Primary care", "coding_system": { "id": 8, "name": "Med codes", "description": "Med codes" }, "phenotype_id": "PH260", "phenotype_version_id": 520, "phenotype_name": "Primary Malignancy_Oesophageal", "code_attribute_header": [ "Disease", "ReadcodeDescr", "Readcode" ], "codes": [ { "code": "1062.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Malignant neoplasm of oesophagus", "Readcode": "B10..00" } }, { "code": "30700.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Malignant neoplasm of oesophagus NOS", "Readcode": "B10z.00" } }, { "code": "41362.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Malignant neoplasm of thoracic oesophagus", "Readcode": "B101.00" } }, { "code": "42416.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Malignant neoplasm of lower third of oesophagus", "Readcode": "B105.00" } }, { "code": "4865.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Oesophageal cancer", "Readcode": "B10z.11" } }, { "code": "50789.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Malignant neoplasm of upper third of oesophagus", "Readcode": "B103.00" } }, { "code": "51001.0", "description": "History of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "[V]Personal history of malignant neoplasm of oesophagus", "Readcode": "ZV10016" } }, { "code": "53591.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Malignant neoplasm of other specified part of oesophagus", "Readcode": "B10y.00" } }, { "code": "54171.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Malignant neoplasm of middle third of oesophagus", "Readcode": "B104.00" } }, { "code": "61695.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Malignant neoplasm of cervical oesophagus", "Readcode": "B100.00" } }, { "code": "63470.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Malignant neoplasm of abdominal oesophagus", "Readcode": "B102.00" } }, { "code": "67497.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Malignant neoplasm, overlapping lesion of oesophagus", "Readcode": "B106.00" } }, { "code": "98142.0", "description": "Diagnosis of Primary Malignancy_Oesophageal", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "ReadcodeDescr": "Siewert type I adenocarcinoma", "Readcode": "B107.00" } } ] }, { "concept_id": 1426, "concept_version_id": 3991, "concept_name": "Primary Malignancy_Oesophageal - Secondary care - Diagnoses", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH260", "phenotype_version_id": 520, "phenotype_name": "Primary Malignancy_Oesophageal", "code_attribute_header": [ "Disease", "Category" ], "codes": [ { "code": "C15", "description": "Malignant neoplasm of oesophagus", "attributes": { "Disease": "Primary Malignancy_Oesophageal", "Category": "Diagnosis of Primary Malignancy_Oesophageal" } } ] } ], "status": 2, "doi": "https://doi.org/10.48533/ws6p-8b43", "is_deleted": null, "publish_status": 2, "owner": "ieuan.scanlon", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 520, "version_name": "Primary Malignancy_Oesophageal", "version_date": "2021-10-06T16:10:05.701869Z", "is_published": true, "is_latest": true } ] } ]