[ { "phenotype_id": "PH265", "phenotype_version_id": 530, "name": "Primary Malignancy_Prostate", "definition": "At the specified date, a patient is defined as having had 'Primary Malignancy_Prostate' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. Primary Malignancy_Prostate diagnosis or history of diagnosis during a consultation \n\nOR\nSecondary care\n\n\n1. ALL diagnoses of Primary Malignancy_Prostate or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n", "implementation": "", "publications": [ { "doi": "10.1016/S2589-7500(19)30012-3", "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3" } ], "validation": "", "citation_requirements": "", "created": "2021-10-06T16:10:25.198252Z", "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A", "collections": [ { "name": "CALIBER", "value": 21 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2021-10-06T16:10:25.198280Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Primary-Malignancy_Prostate---b39245a0-17b2-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Primary-Malignancy_Prostate.cwl", "data_sources": [ { "name": "CPRD GOLD", "value": 5, "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f", "url": "https://healthdatagateway.org/en/dataset/694", "datasource_id": 694 }, { "name": "HES Admitted Patient Care data for CPRD GOLD", "value": 9, "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43", "url": "https://healthdatagateway.org/en/dataset/674", "datasource_id": 674 } ], "coding_system": [ { "name": "ICD10 codes", "value": 4 }, { "name": "Read codes v2", "value": 5 }, { "name": "Med codes", "value": 8 } ], "event_date_range": "01/01/1999 - 01/07/2016", "concept_information": [ { "concept_id": 1439, "concept_version_id": 4017, "concept_name": "Primary Malignancy_Prostate - Primary care", "coding_system": { "id": 5, "name": "Read codes v2", "description": "Read codes v2" }, "phenotype_id": "PH265", "phenotype_version_id": 530, "phenotype_name": "Primary Malignancy_Prostate", "code_attribute_header": [ "Disease", "Medcode", "Category" ], "codes": [ { "code": "1427000.0", "description": "H/O: prostate cancer", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "102314.0", "Category": "History of Primary Malignancy_Prostate" } }, { "code": "4M0..00", "description": "Gleason grading of prostate cancer", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "10178.0", "Category": "Diagnosis of Primary Malignancy_Prostate" } }, { "code": "4M00.00", "description": "Gleason prostate grade 2-4 (low)", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "18503.0", "Category": "Diagnosis of Primary Malignancy_Prostate" } }, { "code": "4M01.00", "description": "Gleason prostate grade 5-7 (medium)", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "18612.0", "Category": "Diagnosis of Primary Malignancy_Prostate" } }, { "code": "4M02.00", "description": "Gleason prostate grade 8-10 (high)", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "26081.0", "Category": "Diagnosis of Primary Malignancy_Prostate" } }, { "code": "7B20000", "description": "Radical cystoprostatourethrectomy", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "9541.0", "Category": "Procedure for Primary Malignancy_Prostate" } }, { "code": "7B20200", "description": "Radical cystoprostatectomy", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "10633.0", "Category": "Procedure for Primary Malignancy_Prostate" } }, { "code": "7B36000", "description": "Radical prostatectomy - unspecified excision of pelvic nodes", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "4997.0", "Category": "Procedure for Primary Malignancy_Prostate" } }, { "code": "7B36500", "description": "Radical prostatectomy without pelvic node excision", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "12593.0", "Category": "Procedure for Primary Malignancy_Prostate" } }, { "code": "7B36600", "description": "Radical prostatectomy with pelvic node sampling", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "11492.0", "Category": "Procedure for Primary Malignancy_Prostate" } }, { "code": "7B36700", "description": "Radical prostatectomy with pelvic lymphadenectomy", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "9533.0", "Category": "Procedure for Primary Malignancy_Prostate" } }, { "code": "B46..00", "description": "Malignant neoplasm of prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "780.0", "Category": "Diagnosis of Primary Malignancy_Prostate" } }, { "code": "ZV10415", "description": "[V]Personal history of malignant neoplasm of prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "Medcode": "37306.0", "Category": "History of Primary Malignancy_Prostate" } } ] }, { "concept_id": 1440, "concept_version_id": 4019, "concept_name": "Primary Malignancy_Prostate - Primary care", "coding_system": { "id": 8, "name": "Med codes", "description": "Med codes" }, "phenotype_id": "PH265", "phenotype_version_id": 530, "phenotype_name": "Primary Malignancy_Prostate", "code_attribute_header": [ "Disease", "ReadcodeDescr", "Readcode" ], "codes": [ { "code": "10178.0", "description": "Diagnosis of Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Gleason grading of prostate cancer", "Readcode": "4M0..00" } }, { "code": "102314.0", "description": "History of Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "H/O: prostate cancer", "Readcode": "1427000.0" } }, { "code": "10633.0", "description": "Procedure for Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Radical cystoprostatectomy", "Readcode": "7B20200" } }, { "code": "11492.0", "description": "Procedure for Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Radical prostatectomy with pelvic node sampling", "Readcode": "7B36600" } }, { "code": "12593.0", "description": "Procedure for Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Radical prostatectomy without pelvic node excision", "Readcode": "7B36500" } }, { "code": "18503.0", "description": "Diagnosis of Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Gleason prostate grade 2-4 (low)", "Readcode": "4M00.00" } }, { "code": "18612.0", "description": "Diagnosis of Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Gleason prostate grade 5-7 (medium)", "Readcode": "4M01.00" } }, { "code": "26081.0", "description": "Diagnosis of Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Gleason prostate grade 8-10 (high)", "Readcode": "4M02.00" } }, { "code": "37306.0", "description": "History of Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "[V]Personal history of malignant neoplasm of prostate", "Readcode": "ZV10415" } }, { "code": "4997.0", "description": "Procedure for Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Radical prostatectomy - unspecified excision of pelvic nodes", "Readcode": "7B36000" } }, { "code": "780.0", "description": "Diagnosis of Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Malignant neoplasm of prostate", "Readcode": "B46..00" } }, { "code": "9533.0", "description": "Procedure for Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Radical prostatectomy with pelvic lymphadenectomy", "Readcode": "7B36700" } }, { "code": "9541.0", "description": "Procedure for Primary Malignancy_Prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "ReadcodeDescr": "Radical cystoprostatourethrectomy", "Readcode": "7B20000" } } ] }, { "concept_id": 1441, "concept_version_id": 4021, "concept_name": "Primary Malignancy_Prostate - Secondary care - Diagnoses", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH265", "phenotype_version_id": 530, "phenotype_name": "Primary Malignancy_Prostate", "code_attribute_header": [ "Disease", "Category" ], "codes": [ { "code": "C61", "description": "Malignant neoplasm of prostate", "attributes": { "Disease": "Primary Malignancy_Prostate", "Category": "Diagnosis of Primary Malignancy_Prostate" } } ] } ], "status": 2, "doi": "https://doi.org/10.48533/xgkt-8104", "is_deleted": null, "publish_status": 2, "owner": "ieuan.scanlon", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 530, "version_name": "Primary Malignancy_Prostate", "version_date": "2021-10-06T16:10:25.226583Z", "is_published": true, "is_latest": true } ] } ]