[ { "phenotype_id": "PH292", "phenotype_version_id": 584, "name": "Secondary Malignancy_Bowel", "definition": "At the specified date, a patient is defined as having had Secondary Malignancy Bowel IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. Secondary Malignancy Bowel diagnosis or history of diagnosis during a consultation \n\nOR\nSecondary care\n\n\n1. ALL diagnoses of Secondary Malignancy Bowel or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n", "implementation": "", "publications": [ { "doi": "10.1016/S2589-7500(19)30012-3", "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3" } ], "validation": "", "citation_requirements": "", "created": "2021-10-06T16:11:31.200143Z", "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A", "collections": [ { "name": "CALIBER", "value": 21 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2021-10-06T16:11:31.200170Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Secondary-Malignancy_Bowel---9a1cb2f0-17bb-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Secondary-Malignancy_Bowel.cwl", "data_sources": [ { "name": "CPRD GOLD", "value": 5, "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f", "url": "https://healthdatagateway.org/en/dataset/694", "datasource_id": 694 }, { "name": "HES Admitted Patient Care data for CPRD GOLD", "value": 9, "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43", "url": "https://healthdatagateway.org/en/dataset/674", "datasource_id": 674 } ], "coding_system": [ { "name": "ICD10 codes", "value": 4 }, { "name": "Read codes v2", "value": 5 }, { "name": "Med codes", "value": 8 } ], "event_date_range": "01/01/1999 - 01/07/2016", "concept_information": [ { "concept_id": 1522, "concept_version_id": 4183, "concept_name": "Secondary Malignancy_Bowel - Primary care", "coding_system": { "id": 5, "name": "Read codes v2", "description": "Read codes v2" }, "phenotype_id": "PH292", "phenotype_version_id": 584, "phenotype_name": "Secondary Malignancy_Bowel", "code_attribute_header": [ "Disease", "Medcode", "Category" ], "codes": [ { "code": "B574.00", "description": "Secondary malignant neoplasm of small intestine and duodenum", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Medcode": "64680.0", "Category": "Diagnosis of Secondary Malignancy_Bowel" } }, { "code": "B574000", "description": "Secondary malignant neoplasm of duodenum", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Medcode": "55946.0", "Category": "Diagnosis of Secondary Malignancy_Bowel" } }, { "code": "B574100", "description": "Secondary malignant neoplasm of jejunum", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Medcode": "110433.0", "Category": "Diagnosis of Secondary Malignancy_Bowel" } }, { "code": "B574200", "description": "Secondary malignant neoplasm of ileum", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Medcode": "99511.0", "Category": "Diagnosis of Secondary Malignancy_Bowel" } }, { "code": "B574z00", "description": "Secondary malig neop of small intestine or duodenum NOS", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Medcode": "70026.0", "Category": "Diagnosis of Secondary Malignancy_Bowel" } }, { "code": "B575.00", "description": "Secondary malignant neoplasm of large intestine and rectum", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Medcode": "44529.0", "Category": "Diagnosis of Secondary Malignancy_Bowel" } }, { "code": "B575000", "description": "Secondary malignant neoplasm of colon", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Medcode": "28727.0", "Category": "Diagnosis of Secondary Malignancy_Bowel" } }, { "code": "B575100", "description": "Secondary malignant neoplasm of rectum", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Medcode": "62909.0", "Category": "Diagnosis of Secondary Malignancy_Bowel" } }, { "code": "B575z00", "description": "Secondary malig neop of large intestine or rectum NOS", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Medcode": "36200.0", "Category": "Diagnosis of Secondary Malignancy_Bowel" } } ] }, { "concept_id": 1523, "concept_version_id": 4185, "concept_name": "Secondary Malignancy_Bowel - Primary care", "coding_system": { "id": 8, "name": "Med codes", "description": "Med codes" }, "phenotype_id": "PH292", "phenotype_version_id": 584, "phenotype_name": "Secondary Malignancy_Bowel", "code_attribute_header": [ "Disease", "ReadcodeDescr", "Readcode" ], "codes": [ { "code": "110433.0", "description": "Diagnosis of Secondary Malignancy_Bowel", "attributes": { "Disease": "Secondary Malignancy_Bowel", "ReadcodeDescr": "Secondary malignant neoplasm of jejunum", "Readcode": "B574100" } }, { "code": "28727.0", "description": "Diagnosis of Secondary Malignancy_Bowel", "attributes": { "Disease": "Secondary Malignancy_Bowel", "ReadcodeDescr": "Secondary malignant neoplasm of colon", "Readcode": "B575000" } }, { "code": "36200.0", "description": "Diagnosis of Secondary Malignancy_Bowel", "attributes": { "Disease": "Secondary Malignancy_Bowel", "ReadcodeDescr": "Secondary malig neop of large intestine or rectum NOS", "Readcode": "B575z00" } }, { "code": "44529.0", "description": "Diagnosis of Secondary Malignancy_Bowel", "attributes": { "Disease": "Secondary Malignancy_Bowel", "ReadcodeDescr": "Secondary malignant neoplasm of large intestine and rectum", "Readcode": "B575.00" } }, { "code": "55946.0", "description": "Diagnosis of Secondary Malignancy_Bowel", "attributes": { "Disease": "Secondary Malignancy_Bowel", "ReadcodeDescr": "Secondary malignant neoplasm of duodenum", "Readcode": "B574000" } }, { "code": "62909.0", "description": "Diagnosis of Secondary Malignancy_Bowel", "attributes": { "Disease": "Secondary Malignancy_Bowel", "ReadcodeDescr": "Secondary malignant neoplasm of rectum", "Readcode": "B575100" } }, { "code": "64680.0", "description": "Diagnosis of Secondary Malignancy_Bowel", "attributes": { "Disease": "Secondary Malignancy_Bowel", "ReadcodeDescr": "Secondary malignant neoplasm of small intestine and duodenum", "Readcode": "B574.00" } }, { "code": "70026.0", "description": "Diagnosis of Secondary Malignancy_Bowel", "attributes": { "Disease": "Secondary Malignancy_Bowel", "ReadcodeDescr": "Secondary malig neop of small intestine or duodenum NOS", "Readcode": "B574z00" } }, { "code": "99511.0", "description": "Diagnosis of Secondary Malignancy_Bowel", "attributes": { "Disease": "Secondary Malignancy_Bowel", "ReadcodeDescr": "Secondary malignant neoplasm of ileum", "Readcode": "B574200" } } ] }, { "concept_id": 1524, "concept_version_id": 4187, "concept_name": "Secondary Malignancy_Bowel - Secondary care - Diagnoses", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH292", "phenotype_version_id": 584, "phenotype_name": "Secondary Malignancy_Bowel", "code_attribute_header": [ "Disease", "Category" ], "codes": [ { "code": "C78.4", "description": "Secondary malignant neoplasm of small intestine", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Category": "Diagnosis of Secondary Malignancy_Bowel" } }, { "code": "C78.5", "description": "Secondary malignant neoplasm of large intestine and rectum", "attributes": { "Disease": "Secondary Malignancy_Bowel", "Category": "Diagnosis of Secondary Malignancy_Bowel" } } ] } ], "status": 2, "doi": "https://doi.org/10.48533/c4yz-z898", "is_deleted": null, "publish_status": 2, "owner": "ieuan.scanlon", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 584, "version_name": "Secondary Malignancy_Bowel", "version_date": "2021-10-06T16:11:31.227657Z", "is_published": true, "is_latest": true } ] } ]