[
  {
    "phenotype_id": "PH319",
    "phenotype_version_id": 638,
    "name": "Thalassaemia trait",
    "definition": "At the specified date, a patient is defined as having had 'Thalassaemia trait' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. 'Thalassaemia trait' diagnosis or history of diagnosis during a consultation \n\nOR\nSecondary care (ICD10)\n\n\n1. ALL diagnoses of 'Thalassaemia trait' or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1016/S2589-7500(19)30012-3",
        "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:12:39.881576Z",
    "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A",
    "collections": [
      {
        "name": "CALIBER",
        "value": 21
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:12:39.881603Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Thalassaemia-trait---1c4f7750-17c9-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Thalassaemia-trait.cwl",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      },
      {
        "name": "HES Admitted Patient Care data for CPRD GOLD",
        "value": 9,
        "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43",
        "url": "https://healthdatagateway.org/en/dataset/674",
        "datasource_id": 674
      }
    ],
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v2",
        "value": 5
      },
      {
        "name": "Med codes",
        "value": 8
      }
    ],
    "event_date_range": "01/01/1999 - 01/07/2016",
    "concept_information": [
      {
        "concept_id": 1600,
        "concept_version_id": 4339,
        "concept_name": "Thalassaemia trait - Primary care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH319",
        "phenotype_version_id": 638,
        "phenotype_name": "Thalassaemia trait",
        "code_attribute_header": [
          "Disease",
          "Medcode",
          "Category"
        ],
        "codes": [
          {
            "code": "D104100",
            "description": "Thalassaemia minor NEC",
            "attributes": {
              "Disease": "Thalassaemia trait",
              "Medcode": "1174.0",
              "Category": "Diagnosis of Thalassaemia trait"
            }
          },
          {
            "code": "D104400",
            "description": "Alpha trait thalassaemia",
            "attributes": {
              "Disease": "Thalassaemia trait",
              "Medcode": "12235.0",
              "Category": "Diagnosis of Thalassaemia trait"
            }
          },
          {
            "code": "D104500",
            "description": "Beta trait thalassaemia",
            "attributes": {
              "Disease": "Thalassaemia trait",
              "Medcode": "9864.0",
              "Category": "Diagnosis of Thalassaemia trait"
            }
          },
          {
            "code": "D104800",
            "description": "Beta minor thalassaemia",
            "attributes": {
              "Disease": "Thalassaemia trait",
              "Medcode": "27761.0",
              "Category": "Diagnosis of Thalassaemia trait"
            }
          }
        ]
      },
      {
        "concept_id": 1601,
        "concept_version_id": 4341,
        "concept_name": "Thalassaemia trait - Primary care",
        "coding_system": {
          "id": 8,
          "name": "Med codes",
          "description": "Med codes"
        },
        "phenotype_id": "PH319",
        "phenotype_version_id": 638,
        "phenotype_name": "Thalassaemia trait",
        "code_attribute_header": [
          "Disease",
          "ReadcodeDescr",
          "Readcode"
        ],
        "codes": [
          {
            "code": "1174.0",
            "description": "Diagnosis of Thalassaemia trait",
            "attributes": {
              "Disease": "Thalassaemia trait",
              "ReadcodeDescr": "Thalassaemia minor NEC",
              "Readcode": "D104100"
            }
          },
          {
            "code": "12235.0",
            "description": "Diagnosis of Thalassaemia trait",
            "attributes": {
              "Disease": "Thalassaemia trait",
              "ReadcodeDescr": "Alpha trait thalassaemia",
              "Readcode": "D104400"
            }
          },
          {
            "code": "27761.0",
            "description": "Diagnosis of Thalassaemia trait",
            "attributes": {
              "Disease": "Thalassaemia trait",
              "ReadcodeDescr": "Beta minor thalassaemia",
              "Readcode": "D104800"
            }
          },
          {
            "code": "9864.0",
            "description": "Diagnosis of Thalassaemia trait",
            "attributes": {
              "Disease": "Thalassaemia trait",
              "ReadcodeDescr": "Beta trait thalassaemia",
              "Readcode": "D104500"
            }
          }
        ]
      },
      {
        "concept_id": 1602,
        "concept_version_id": 4343,
        "concept_name": "Thalassaemia trait - Secondary care - Diagnoses",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH319",
        "phenotype_version_id": 638,
        "phenotype_name": "Thalassaemia trait",
        "code_attribute_header": [
          "Disease",
          "Category"
        ],
        "codes": [
          {
            "code": "D56.3",
            "description": "Thalassaemia trait",
            "attributes": {
              "Disease": "Thalassaemia trait",
              "Category": "Diagnosis of Thalassaemia trait"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/vkx7-5e22",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 638,
        "version_name": "Thalassaemia trait",
        "version_date": "2021-10-06T16:12:39.909426Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]