[
  {
    "phenotype_id": "PH326",
    "phenotype_version_id": 652,
    "name": "Ulcerative colitis",
    "definition": "At the specified date, a patient is defined as having had 'Ulcerative colitis' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:\n\n\nPrimary care\n\n\n1. 'Ulcerative colitis' diagnosis or history of diagnosis or procedure during a consultation \n\nOR\nSecondary care\n\n\n1. ALL diagnoses of 'Ulcerative colitis' or history of diagnosis during a hospitalization\n\n\n\n\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": "10.1016/S2589-7500(19)30012-3",
        "details": "Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3"
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:12:56.656652Z",
    "author": "Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A",
    "collections": [
      {
        "name": "CALIBER",
        "value": 21
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:12:56.656680Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "https://kclhi.org/phenoflow/workflows/github.com/phenoflow/Ulcerative-colitis---2cfdb880-17cb-11ef-9de4-4d4ea830ad16/blob/read-potential-cases-fhir/Ulcerative-colitis.cwl",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      },
      {
        "name": "HES Admitted Patient Care data for CPRD GOLD",
        "value": 9,
        "uid": "4bcf64a6-f404-4ef4-ae6e-172512ab5f43",
        "url": "https://healthdatagateway.org/en/dataset/674",
        "datasource_id": 674
      }
    ],
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v2",
        "value": 5
      },
      {
        "name": "Med codes",
        "value": 8
      }
    ],
    "event_date_range": "01/01/1999 - 01/07/2016",
    "concept_information": [
      {
        "concept_id": 1621,
        "concept_version_id": 4381,
        "concept_name": "Ulcerative colitis - Primary care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH326",
        "phenotype_version_id": 652,
        "phenotype_name": "Ulcerative colitis",
        "code_attribute_header": [
          "Disease",
          "Medcode",
          "Category"
        ],
        "codes": [
          {
            "code": "14C4.11",
            "description": "H/O: ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "5749.0",
              "Category": "History of Ulcerative colitis"
            }
          },
          {
            "code": "J41..00",
            "description": "Idiopathic proctocolitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "5133.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J410.00",
            "description": "Ulcerative proctocolitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "6650.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J410000",
            "description": "Ulcerative ileocolitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "48732.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J410100",
            "description": "Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "704.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J410200",
            "description": "Ulcerative rectosigmoiditis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "24858.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J410300",
            "description": "Ulcerative proctitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "8347.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J410400",
            "description": "Exacerbation of ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "22516.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J410z00",
            "description": "Ulcerative proctocolitis NOS",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "33456.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J411.00",
            "description": "Ulcerative (chronic) enterocolitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "30433.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J41..11",
            "description": "Mucous colitis and/or proctitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "23950.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J41..12",
            "description": "Ulcerative colitis and/or proctitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "1784.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J412.00",
            "description": "Ulcerative (chronic) ileocolitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "42822.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J413.00",
            "description": "Ulcerative pancolitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "104259.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J41y.00",
            "description": "Other idiopathic proctocolitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "24550.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J41yz00",
            "description": "Other idiopathic proctocolitis NOS",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "43090.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "J41z.00",
            "description": "Idiopathic proctocolitis NOS",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "15207.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "Jyu4100",
            "description": "[X]Other ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "53743.0",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          },
          {
            "code": "N031000",
            "description": "Arthropathy in ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "17641.0",
              "Category": "History of Ulcerative colitis"
            }
          },
          {
            "code": "N045400",
            "description": "Juvenile arthritis in ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Medcode": "71083.0",
              "Category": "History of Ulcerative colitis"
            }
          }
        ]
      },
      {
        "concept_id": 1622,
        "concept_version_id": 4383,
        "concept_name": "Ulcerative colitis - Primary care",
        "coding_system": {
          "id": 8,
          "name": "Med codes",
          "description": "Med codes"
        },
        "phenotype_id": "PH326",
        "phenotype_version_id": 652,
        "phenotype_name": "Ulcerative colitis",
        "code_attribute_header": [
          "Disease",
          "ReadcodeDescr",
          "Readcode"
        ],
        "codes": [
          {
            "code": "104259.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Ulcerative pancolitis",
              "Readcode": "J413.00"
            }
          },
          {
            "code": "15207.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Idiopathic proctocolitis NOS",
              "Readcode": "J41z.00"
            }
          },
          {
            "code": "17641.0",
            "description": "History of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Arthropathy in ulcerative colitis",
              "Readcode": "N031000"
            }
          },
          {
            "code": "1784.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Ulcerative colitis and/or proctitis",
              "Readcode": "J41..12"
            }
          },
          {
            "code": "22516.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Exacerbation of ulcerative colitis",
              "Readcode": "J410400"
            }
          },
          {
            "code": "23950.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Mucous colitis and/or proctitis",
              "Readcode": "J41..11"
            }
          },
          {
            "code": "24550.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Other idiopathic proctocolitis",
              "Readcode": "J41y.00"
            }
          },
          {
            "code": "24858.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Ulcerative rectosigmoiditis",
              "Readcode": "J410200"
            }
          },
          {
            "code": "30433.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Ulcerative (chronic) enterocolitis",
              "Readcode": "J411.00"
            }
          },
          {
            "code": "33456.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Ulcerative proctocolitis NOS",
              "Readcode": "J410z00"
            }
          },
          {
            "code": "42822.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Ulcerative (chronic) ileocolitis",
              "Readcode": "J412.00"
            }
          },
          {
            "code": "43090.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Other idiopathic proctocolitis NOS",
              "Readcode": "J41yz00"
            }
          },
          {
            "code": "48732.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Ulcerative ileocolitis",
              "Readcode": "J410000"
            }
          },
          {
            "code": "5133.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Idiopathic proctocolitis",
              "Readcode": "J41..00"
            }
          },
          {
            "code": "53743.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "[X]Other ulcerative colitis",
              "Readcode": "Jyu4100"
            }
          },
          {
            "code": "5749.0",
            "description": "History of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "H/O: ulcerative colitis",
              "Readcode": "14C4.11"
            }
          },
          {
            "code": "6650.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Ulcerative proctocolitis",
              "Readcode": "J410.00"
            }
          },
          {
            "code": "704.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Ulcerative colitis",
              "Readcode": "J410100"
            }
          },
          {
            "code": "71083.0",
            "description": "History of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Juvenile arthritis in ulcerative colitis",
              "Readcode": "N045400"
            }
          },
          {
            "code": "8347.0",
            "description": "Diagnosis of Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "ReadcodeDescr": "Ulcerative proctitis",
              "Readcode": "J410300"
            }
          }
        ]
      },
      {
        "concept_id": 1623,
        "concept_version_id": 4385,
        "concept_name": "Ulcerative colitis - Secondary care - Diagnoses",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH326",
        "phenotype_version_id": 652,
        "phenotype_name": "Ulcerative colitis",
        "code_attribute_header": [
          "Disease",
          "Category"
        ],
        "codes": [
          {
            "code": "K51",
            "description": "Ulcerative colitis",
            "attributes": {
              "Disease": "Ulcerative colitis",
              "Category": "Diagnosis of Ulcerative colitis"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/0xmv-sd51",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 652,
        "version_name": "Ulcerative colitis",
        "version_date": "2021-10-06T16:12:56.683332Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]