[
  {
    "phenotype_id": "PH3359",
    "phenotype_version_id": 8368,
    "name": "COVID-19 Identification (Primary Care)",
    "definition": "This codelist was taken from [OpenCodelists](https://www.opencodelists.org/), created by [OpenSAFELY](https://www.opensafely.org/). We recommend viewing this Phenotype on the OpenCodelist website to view the most recent version.\n\n\nCodelist created to identify COVID\\-19 in primary care with as much specificity as possible\n\n\n© University of Oxford for the Bennett Institute for Applied Data Science 2025\\. This work may be copied freely for non\\-commercial research and study.\n\n",
    "implementation": null,
    "publications": null,
    "validation": null,
    "citation_requirements": null,
    "created": "2026-01-26T23:14:04.107544Z",
    "author": "OpenSAFELY",
    "collections": [
      {
        "name": "OpenCodelist",
        "value": 31
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": {
      "id": 1,
      "slug": "opensafely",
      "name": "OpenSAFELY"
    },
    "world_access": 1,
    "updated": "2026-01-26T23:14:05.348816Z",
    "references": [
      {
        "url": "https://github.com/emprestige/disparities-comparison/issues/1",
        "title": "Outcome Phenotypes Github Issue"
      }
    ],
    "signed_off": [],
    "methodology": "Codelist has been reviewed by Francis Collett\\-White. To see full outcome phenotypes see Github issue in references\n\n",
    "coding_system": [
      {
        "name": "SNOMED  CT codes",
        "value": 9
      }
    ],
    "open_codelist_id": "opensafely/covid-19-identification-primary-care",
    "source_reference": "https://www.opencodelists.org/codelist/opensafely/covid-19-identification-primary-care/507a5797",
    "concept_information": [
      {
        "concept_id": 8545,
        "concept_version_id": 16030,
        "concept_name": "opensafely/covid-19-identification-primary-care/507a5797",
        "coding_system": {
          "id": 9,
          "name": "SNOMED  CT codes",
          "description": "SNOMED CT codes"
        },
        "phenotype_id": "PH3359",
        "phenotype_version_id": 8368,
        "phenotype_name": "COVID-19 Identification (Primary Care)",
        "code_attribute_header": [],
        "codes": [
          {
            "code": "1017214008",
            "description": "Viremia caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1119302008",
            "description": "Acute disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1153537004",
            "description": "Antigen of inactivated whole severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1157045004",
            "description": "Antigen of severe acute respiratory syndrome coronavirus 2 protein",
            "attributes": null
          },
          {
            "code": "119731000146105",
            "description": "Cardiomyopathy due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "119741000146102",
            "description": "Conjunctivitis due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "119751000146104",
            "description": "Fever caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "119981000146107",
            "description": "Dyspnea caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1217296006",
            "description": "Disease caused by severe acute respiratory syndrome coronavirus 2 following administration of vaccine product against severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240381000000105",
            "description": "Severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240391000000107",
            "description": "Antigen of severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240471000000102",
            "description": "Measurement of severe acute respiratory syndrome coronavirus 2 antigen",
            "attributes": null
          },
          {
            "code": "1240511000000106",
            "description": "Detection of severe acute respiratory syndrome coronavirus 2 using polymerase chain reaction technique",
            "attributes": null
          },
          {
            "code": "1240521000000100",
            "description": "Otitis media due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240531000000103",
            "description": "Myocarditis due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240541000000107",
            "description": "Infection of upper respiratory tract caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240551000000105",
            "description": "Pneumonia caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240561000000108",
            "description": "Encephalopathy due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240571000000101",
            "description": "Gastroenteritis caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1240581000000104",
            "description": "Severe acute respiratory syndrome coronavirus 2 detected",
            "attributes": null
          },
          {
            "code": "1240751000000100",
            "description": "Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1269559008",
            "description": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 using microchip real time polymerase chain reaction",
            "attributes": null
          },
          {
            "code": "1300631000000101",
            "description": "Coronavirus disease 19 severity score",
            "attributes": null
          },
          {
            "code": "1300671000000104",
            "description": "Coronavirus disease 19 severity scale",
            "attributes": null
          },
          {
            "code": "1300681000000102",
            "description": "Assessment using coronavirus disease 19 severity scale",
            "attributes": null
          },
          {
            "code": "1300721000000109",
            "description": "Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 confirmed by laboratory test",
            "attributes": null
          },
          {
            "code": "1300731000000106",
            "description": "Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 confirmed using clinical diagnostic criteria",
            "attributes": null
          },
          {
            "code": "1321241000000105",
            "description": "Cardiomyopathy caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1321301000000101",
            "description": "Severe acute respiratory syndrome coronavirus 2 ribonucleic acid qualitative existence in specimen",
            "attributes": null
          },
          {
            "code": "1322781000000102",
            "description": "Severe acute respiratory syndrome coronavirus 2 antigen detection result positive",
            "attributes": null
          },
          {
            "code": "1322871000000109",
            "description": "Severe acute respiratory syndrome coronavirus 2 antibody detection result positive",
            "attributes": null
          },
          {
            "code": "1324601000000106",
            "description": "Severe acute respiratory syndrome coronavirus 2 ribonucleic acid detected",
            "attributes": null
          },
          {
            "code": "1324611000000108",
            "description": "Measurement of severe acute respiratory syndrome coronavirus 2 antigen",
            "attributes": null
          },
          {
            "code": "1325071000000105",
            "description": "COVID-19 Yorkshire Rehabilitation Screening tool",
            "attributes": null
          },
          {
            "code": "1325081000000107",
            "description": "Assessment using COVID-19 Yorkshire Rehabilitation Screening tool",
            "attributes": null
          },
          {
            "code": "1325171000000109",
            "description": "Acute disease caused by severe acute respiratory syndrome coronavirus 2 infection",
            "attributes": null
          },
          {
            "code": "1325181000000106",
            "description": "Ongoing symptomatic disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "1332141006",
            "description": "Nirmatrelvir",
            "attributes": null
          },
          {
            "code": "1332142004",
            "description": "Severe acute respiratory syndrome coronavirus main protease inhibitor",
            "attributes": null
          },
          {
            "code": "1332143009",
            "description": "Substance with Severe acute respiratory syndrome coronavirus main protease inhibitor mechanism of action",
            "attributes": null
          },
          {
            "code": "138389411000119105",
            "description": "Acute bronchitis caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "189486241000119100",
            "description": "Asymptomatic severe acute respiratory syndrome coronavirus 2 infection",
            "attributes": null
          },
          {
            "code": "29301000087104",
            "description": "Antigen of severe acute respiratory syndrome coronavirus 2 recombinant spike protein",
            "attributes": null
          },
          {
            "code": "30131000087101",
            "description": "Antigen of severe acute respiratory syndrome coronavirus 2 virus-like particle",
            "attributes": null
          },
          {
            "code": "50321000237103",
            "description": "Qualitative result of severe acute respiratory syndrome coronavirus 2 ribonucleic acid nucleic acid amplification",
            "attributes": null
          },
          {
            "code": "51411000237109",
            "description": "Qualitative result of human coronavirus ribonucleic acid nucleic acid amplification",
            "attributes": null
          },
          {
            "code": "51631000237101",
            "description": "Qualitative result of severe acute respiratory syndrome coronavirus 2 antigen in serum",
            "attributes": null
          },
          {
            "code": "52411000237104",
            "description": "Qualitative result of severe acute respiratory syndrome coronavirus ribonucleic acid nucleic acid amplification",
            "attributes": null
          },
          {
            "code": "674814021000119106",
            "description": "Acute respiratory distress syndrome due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "840533007",
            "description": "Severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "840536004",
            "description": "Antigen of severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "840539006",
            "description": "Disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "866151004",
            "description": "Lymphocytopenia due to severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "866152006",
            "description": "Thrombocytopenia due to severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "870588003",
            "description": "Sepsis due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "870589006",
            "description": "Acute kidney injury due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "870590002",
            "description": "Acute hypoxemic respiratory failure due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "870591003",
            "description": "Rhabdomyolysis due to disease caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "871553007",
            "description": "Detection of severe acute respiratory syndrome coronavirus 2 antigen",
            "attributes": null
          },
          {
            "code": "871555000",
            "description": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "871556004",
            "description": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in nasopharyngeal swab",
            "attributes": null
          },
          {
            "code": "871557008",
            "description": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in oropharyngeal swab",
            "attributes": null
          },
          {
            "code": "871558003",
            "description": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in sputum",
            "attributes": null
          },
          {
            "code": "871559006",
            "description": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 in bronchoalveolar lavage fluid",
            "attributes": null
          },
          {
            "code": "871560001",
            "description": "Detection of ribonucleic acid of severe acute respiratory syndrome coronavirus 2 using polymerase chain reaction",
            "attributes": null
          },
          {
            "code": "871562009",
            "description": "Detection of severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "880529761000119102",
            "description": "Infection of lower respiratory tract caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "882784691000119100",
            "description": "Pneumonia caused by severe acute respiratory syndrome coronavirus 2",
            "attributes": null
          },
          {
            "code": "894362851000119109",
            "description": "Disease caused by severe acute respiratory syndrome coronavirus 2 during pregnancy",
            "attributes": null
          }
        ]
      }
    ],
    "coding_system_release": "",
    "open_codelist_version_id": "507a5797",
    "open_codelist_version_tag": "",
    "status": 1,
    "doi": "https://doi.org/10.48533/kwx5-4080",
    "is_deleted": false,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 3,
      "name": "OpenCodelists Phenotype",
      "description": "OpenSafely's OpenCodelist Phenotype, visit https://www.opencodelists.org/ to learn more",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 8368,
        "version_name": "COVID-19 Identification (Primary Care)",
        "version_date": "2026-01-26T23:14:05.356658Z",
        "is_published": true,
        "is_latest": true
      },
      {
        "version_id": 8367,
        "version_name": "COVID-19 Identification (Primary Care)",
        "version_date": "2026-01-26T23:14:04.118204Z",
        "is_published": true,
        "is_latest": false
      }
    ]
  }
]