[ { "phenotype_id": "PH4117", "phenotype_version_id": 9335, "name": "Bacterial Diseases (excl TB)", "definition": "Bacterial Diseases (excl TB)\n\nUKB baseline self reported fields.\n", "implementation": "The earliest record across all sources is obtained.\n", "publications": [ { "doi": "https://doi.org/10.1038/s41598-025-05838-9", "details": "Torralbo, Ana and Davitte, Jonathan M. and Croteau-Chonka, Damien C. and Ytsma, Cai R. and Tomlinson, Christopher and Fitzpatrick, Natalie and Chung, Sheng-Chia and Fatemifar, Ghazaleh and Cortes, Adrian S. and Richardson, Tom G. and Barclay, Matthew and Carrasco Zanini Sanchez, Julia and Finan, Chris and Hemingway, Harry and Hingorani, Aroon D. and Kuan Po Ai, Valerie and Langenberg, Claudia and Lyratzopoulos, Georgios and Lumbers, Tom and Pietzner, Maik and Shah, Anoop Dinesh and Thygesen, Johan Hilge and Zelenka, Natalie and Whittaker, John C. and Ehm, Margaret G. and Denaxas, Spiros, A Computational Framework for Defining and Validating Reproducible Phenotyping Algorithms of 313 Diseases in the UK Biobank.", "primary": true } ], "validation": "Phenotypes underwent a multi\\-layered validation approach that included a) evaluating data source concordance, b) age\\-sex incidence and baseline prevalence patterns, c) an external comparison to a representative and unselected UK EHR dataset, d) modifiable risk factor associations, and e) genetic correlations with external genome\\-wide association studies (GWAS). Results showed consistent disease distributions by age and sex, high ranked correlation with general population prevalence estimates, confirmed risk factor associations, and significant genetic correlations with external GWAS.\n", "citation_requirements": null, "created": "2026-06-08T20:06:39.120499Z", "author": "Torralbo, A; Davitte, J M; Croteau-Chonka, D C; Ytsma, C; Tomlinson, C; Fitzpatrick, N K; Chung, S C; Fatemifar, G; Cortes, A S; Richardson, T G; Barclay, M; Carrasco Zanini, J; Finan, C; Hemingway, H; Hingorani, A; Kuan, V; Langenberg, C; Lyratzopoulos, G; Lumbers, R T; Pietzner, M; Shah, A D; Thygesen, J H; Zelenka, N; Whittaker, J C; Ehm, M G; Denaxas, S", "collections": [ { "name": "Phenotype Library", "value": 18 }, { "name": "UK Biobank", "value": 32 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2026-06-08T20:06:39.115153Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "trials": null, "ontology": [ { "name": "Bacterial infectious disease (disorder)", "value": 449703 } ], "phenoflowid": null, "data_sources": [ { "name": "UK Biobank", "value": 13, "uid": "6a9f93ad-2434-41d9-93bf-6e9d2eee04e5", "url": "https://healthdatagateway.org/en/dataset/700", "datasource_id": 700 }, { "name": "Patient Episode Dataset for Wales (PEDW)", "value": 40, "uid": "4c33a5d2-164c-41d7-9797-dc2b008cc852", "url": "https://healthdatagateway.org/en/dataset/318", "datasource_id": 318 }, { "name": "Scottish Cancer Registry (SMR06)", "value": 417, "uid": "ad36dc03-1856-44de-99b0-1af6f312d86b", "url": "https://healthdatagateway.org/en/dataset/79", "datasource_id": 79 }, { "name": "Cancer Registration Data", "value": 788, "uid": "6904a2ff-ab44-4dd6-b9ec-25d3cad29e43", "url": "https://healthdatagateway.org/en/dataset/880", "datasource_id": 880 } ], "endorsements": null, "project_name": null, "coding_system": [ { "name": "UKBioBank codes", "value": 12 }, { "name": "ICD10 codes", "value": 4 } ], "corresp_author": "Ana Torralbo", "event_date_range": null, "concept_information": [ { "concept_id": 9713, "concept_version_id": 17198, "concept_name": "Non-cancer illness code, self-reported", "coding_system": { "id": 12, "name": "UKBioBank codes", "description": "UKBioBank codes" }, "phenotype_id": "PH4117", "phenotype_version_id": 9335, "phenotype_name": "Bacterial Diseases (excl TB)", "code_attribute_header": [ "type" ], "codes": [ { "code": "1308", "description": "osteomyelitis", "attributes": { "type": "any" } }, { "code": "1442", "description": "helicobacter pylori", "attributes": { "type": "any" } }, { "code": "1479", "description": "rheumatic fever", "attributes": { "type": "any" } }, { "code": "1498", "description": "empyema", "attributes": { "type": "any" } }, { "code": "1557", "description": "pelvic inflammatory disease/ pid", "attributes": { "type": "any" } }, { "code": "1566", "description": "mrsa / methicillin resistant staphylococcus aureus", "attributes": { "type": "any" } }, { "code": "1572", "description": "whooping cough / pertussis", "attributes": { "type": "any" } }, { "code": "1574", "description": "diphtheria", "attributes": { "type": "any" } }, { "code": "1577", "description": "typhoid fever", "attributes": { "type": "any" } }, { "code": "1625", "description": "cellulitis", "attributes": { "type": "any" } }, { "code": "1657", "description": "septicaemia / sepsis", "attributes": { "type": "any" } }, { "code": "1677", "description": "scarlet fever / scarlatina", "attributes": { "type": "any" } }, { "code": "1678", "description": "chlamydia", "attributes": { "type": "any" } } ] }, { "concept_id": 9714, "concept_version_id": 17199, "concept_name": "Diagnoses - main ICD10", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH4117", "phenotype_version_id": 9335, "phenotype_name": "Bacterial Diseases (excl TB)", "code_attribute_header": [ "type" ], "codes": [ { "code": "A00", "description": "Cholera", "attributes": { "type": "any" } }, { "code": "A01", "description": "Typhoid and paratyphoid fevers", "attributes": { "type": "any" } }, { "code": "A02", "description": "Other salmonella infections", "attributes": { "type": "any" } }, { "code": "A03", "description": "Shigellosis", "attributes": { "type": "any" } }, { "code": "A04", "description": "Other bacterial intestinal infections", "attributes": { "type": "any" } }, { "code": "A05", "description": "Other bacterial foodborne intoxications, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A20", "description": "Plague", "attributes": { "type": "any" } }, { "code": "A21", "description": "Tularaemia", "attributes": { "type": "any" } }, { "code": "A22", "description": "Anthrax", "attributes": { "type": "any" } }, { "code": "A23", "description": "Brucellosis", "attributes": { "type": "any" } }, { "code": "A24", "description": "Glanders and melioidosis", "attributes": { "type": "any" } }, { "code": "A25", "description": "Rat-bite fevers", "attributes": { "type": "any" } }, { "code": "A26", "description": "Erysipeloid", "attributes": { "type": "any" } }, { "code": "A27", "description": "Leptospirosis", "attributes": { "type": "any" } }, { "code": "A28", "description": "Other zoonotic bacterial diseases, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A30", "description": "Leprosy [Hansen's disease]", "attributes": { "type": "any" } }, { "code": "A31", "description": "Infection due to other mycobacteria", "attributes": { "type": "any" } }, { "code": "A32", "description": "Listeriosis", "attributes": { "type": "any" } }, { "code": "A35", "description": "Other tetanus", "attributes": { "type": "any" } }, { "code": "A36", "description": "Diphtheria", "attributes": { "type": "any" } }, { "code": "A37", "description": "Whooping cough", "attributes": { "type": "any" } }, { "code": "A38", "description": "Scarlet fever", "attributes": { "type": "any" } }, { "code": "A39", "description": "Meningococcal infection", "attributes": { "type": "any" } }, { "code": "A40", "description": "Streptococcal sepsis", "attributes": { "type": "any" } }, { "code": "A41.0", "description": "Sepsis due to Staphylococcus aureus", "attributes": { "type": "any" } }, { "code": "A41.1", "description": "Sepsis due to other specified staphylococcus", "attributes": { "type": "any" } }, { "code": "A41.2", "description": "Sepsis due to unspecified staphylococcus", "attributes": { "type": "any" } }, { "code": "A41.3", "description": "Sepsis due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "A41.4", "description": "Sepsis due to anaerobes", "attributes": { "type": "any" } }, { "code": "A41.5", "description": "Sepsis due to other Gram-negative organisms", "attributes": { "type": "any" } }, { "code": "A42", "description": "Actinomycosis", "attributes": { "type": "any" } }, { "code": "A43", "description": "Nocardiosis", "attributes": { "type": "any" } }, { "code": "A44", "description": "Bartonellosis", "attributes": { "type": "any" } }, { "code": "A46", "description": "Erysipelas", "attributes": { "type": "any" } }, { "code": "A48", "description": "Other bacterial diseases, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A49", "description": "Bacterial infection of unspecified site", "attributes": { "type": "any" } }, { "code": "A50", "description": "Congenital syphilis", "attributes": { "type": "any" } }, { "code": "A51", "description": "Early syphilis", "attributes": { "type": "any" } }, { "code": "A52", "description": "Late syphilis", "attributes": { "type": "any" } }, { "code": "A53", "description": "Other and unspecified syphilis", "attributes": { "type": "any" } }, { "code": "A54", "description": "Gonococcal infection", "attributes": { "type": "any" } }, { "code": "A55", "description": "Chlamydial lymphogranuloma (venereum)", "attributes": { "type": "any" } }, { "code": "A56", "description": "Other sexually transmitted chlamydial diseases", "attributes": { "type": "any" } }, { "code": "A57", "description": "Chancroid", "attributes": { "type": "any" } }, { "code": "A58", "description": "Granuloma inguinale", "attributes": { "type": "any" } }, { "code": "A65", "description": "Nonvenereal syphilis", "attributes": { "type": "any" } }, { "code": "A66", "description": "Yaws", "attributes": { "type": "any" } }, { "code": "A67", "description": "Pinta [carate]", "attributes": { "type": "any" } }, { "code": "A68", "description": "Relapsing fevers", "attributes": { "type": "any" } }, { "code": "A69", "description": "Other spirochaetal infections", "attributes": { "type": "any" } }, { "code": "A70", "description": "Chlamydia psittaci infection", "attributes": { "type": "any" } }, { "code": "A71", "description": "Trachoma", "attributes": { "type": "any" } }, { "code": "A74", "description": "Other diseases caused by chlamydiae", "attributes": { "type": "any" } }, { "code": "A75", "description": "Typhus fever", "attributes": { "type": "any" } }, { "code": "A77", "description": "Spotted fever [tick-borne rickettsioses]", "attributes": { "type": "any" } }, { "code": "A78", "description": "Q fever", "attributes": { "type": "any" } }, { "code": "A79", "description": "Other rickettsioses", "attributes": { "type": "any" } }, { "code": "B20.1", "description": "HIV disease resulting in other bacterial infections", "attributes": { "type": "any" } }, { "code": "B92", "description": "Sequelae of leprosy", "attributes": { "type": "any" } }, { "code": "B94.0", "description": "Sequelae of trachoma", "attributes": { "type": "any" } }, { "code": "B95", "description": "Streptococcus and staphylococcus as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B96", "description": "Other specified bacterial agents as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B98.0", "description": "Helicobacter pylori [H.pylori] as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B98.1", "description": "Vibrio vulnificus as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "G00", "description": "Bacterial meningitis, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "G01", "description": "Meningitis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "G04.2", "description": "Bacterial meningoencephalitis and meningomyelitis, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "G05.0", "description": "Encephalitis, myelitis and encephalomyelitis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "H62.0", "description": "Otitis externa in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "H67.0", "description": "Otitis media in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I00", "description": "Rheumatic fever without mention of heart involvement", "attributes": { "type": "any" } }, { "code": "I01", "description": "Rheumatic fever with heart involvement", "attributes": { "type": "any" } }, { "code": "I02", "description": "Rheumatic chorea", "attributes": { "type": "any" } }, { "code": "I05", "description": "Rheumatic mitral valve diseases", "attributes": { "type": "any" } }, { "code": "I06", "description": "Rheumatic aortic valve diseases", "attributes": { "type": "any" } }, { "code": "I07", "description": "Rheumatic tricuspid valve diseases", "attributes": { "type": "any" } }, { "code": "I09", "description": "Other rheumatic heart diseases", "attributes": { "type": "any" } }, { "code": "I32.0", "description": "Pericarditis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I41.0", "description": "Myocarditis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I98.0", "description": "Cardiovascular syphilis", "attributes": { "type": "any" } }, { "code": "J02.0", "description": "Streptococcal pharyngitis", "attributes": { "type": "any" } }, { "code": "J03.0", "description": "Streptococcal tonsillitis", "attributes": { "type": "any" } }, { "code": "J13", "description": "Pneumonia due to Streptococcus pneumoniae", "attributes": { "type": "any" } }, { "code": "J14", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "J15", "description": "Bacterial pneumonia, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "J16.0", "description": "Chlamydial pneumonia", "attributes": { "type": "any" } }, { "code": "J17.0", "description": "Pneumonia in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "J20.0", "description": "Acute bronchitis due to Mycoplasma pneumoniae", "attributes": { "type": "any" } }, { "code": "J20.1", "description": "Acute bronchitis due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "J20.2", "description": "Acute bronchitis due to streptococcus", "attributes": { "type": "any" } }, { "code": "J34.0", "description": "Abscess, furuncle and carbuncle of nose", "attributes": { "type": "any" } }, { "code": "J36", "description": "Peritonsillar abscess", "attributes": { "type": "any" } }, { "code": "J39.0", "description": "Retropharyngeal and parapharyngeal abscess", "attributes": { "type": "any" } }, { "code": "J39.1", "description": "Other abscess of pharynx", "attributes": { "type": "any" } }, { "code": "J86", "description": "Pyothorax", "attributes": { "type": "any" } }, { "code": "K61", "description": "Abscess of anal and rectal regions", "attributes": { "type": "any" } }, { "code": "K63.0", "description": "Abscess of intestine", "attributes": { "type": "any" } }, { "code": "K67.0", "description": "Chlamydial peritonitis", "attributes": { "type": "any" } }, { "code": "K67.1", "description": "Gonococcal peritonitis", "attributes": { "type": "any" } }, { "code": "L00", "description": "Staphylococcal scalded skin syndrome", "attributes": { "type": "any" } }, { "code": "L01", "description": "Impetigo", "attributes": { "type": "any" } }, { "code": "L02", "description": "Cutaneous abscess, furuncle and carbuncle", "attributes": { "type": "any" } }, { "code": "L03", "description": "Cellulitis", "attributes": { "type": "any" } }, { "code": "L05.0", "description": "Pilonidal cyst with abscess", "attributes": { "type": "any" } }, { "code": "L08.1", "description": "Erythrasma", "attributes": { "type": "any" } }, { "code": "M00.0", "description": "Staphylococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.1", "description": "Pneumococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.2", "description": "Other streptococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.8", "description": "Arthritis and polyarthritis due to other specified bacterial agents", "attributes": { "type": "any" } }, { "code": "M00.9", "description": "Pyogenic arthritis, unspecified", "attributes": { "type": "any" } }, { "code": "M01.0", "description": "Meningococcal arthritis", "attributes": { "type": "any" } }, { "code": "M01.2", "description": "Arthritis in Lyme disease", "attributes": { "type": "any" } }, { "code": "M01.3", "description": "Arthritis in other bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "M03.0", "description": "Postmeningococcal arthritis", "attributes": { "type": "any" } }, { "code": "M03.1", "description": "Postinfective arthropathy in syphilis", "attributes": { "type": "any" } }, { "code": "M49.1", "description": "Brucella spondylitis", "attributes": { "type": "any" } }, { "code": "M49.2", "description": "Enterobacterial spondylitis", "attributes": { "type": "any" } }, { "code": "M63.0", "description": "Myositis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "M65.0", "description": "Abscess of tendon sheath", "attributes": { "type": "any" } }, { "code": "M65.1", "description": "Other infective (teno)synovitis", "attributes": { "type": "any" } }, { "code": "M68.0", "description": "Synovitis and tenosynovitis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "M71.0", "description": "Abscess of bursa", "attributes": { "type": "any" } }, { "code": "M71.1", "description": "Other infective bursitis", "attributes": { "type": "any" } }, { "code": "M72.6", "description": "Necrotizing fasciitis", "attributes": { "type": "any" } }, { "code": "M73.1", "description": "Syphilitic bursitis", "attributes": { "type": "any" } }, { "code": "M86", "description": "Osteomyelitis", "attributes": { "type": "any" } }, { "code": "M90.1", "description": "Periostitis in other infectious diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "M90.2", "description": "Osteopathy in other infectious diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "N13.6", "description": "Pyonephrosis", "attributes": { "type": "any" } }, { "code": "N15.1", "description": "Renal and perinephric abscess", "attributes": { "type": "any" } }, { "code": "N29.0", "description": "Late syphilis of kidney", "attributes": { "type": "any" } }, { "code": "N39.0", "description": "Urinary tract infection, site not specified", "attributes": { "type": "any" } }, { "code": "N41.0", "description": "Acute prostatitis", "attributes": { "type": "any" } }, { "code": "N41.2", "description": "Abscess of prostate", "attributes": { "type": "any" } }, { "code": "N41.3", "description": "Prostatocystitis", "attributes": { "type": "any" } }, { "code": "N43.1", "description": "Infected hydrocele", "attributes": { "type": "any" } }, { "code": "N45", "description": "Orchitis and epididymitis", "attributes": { "type": "any" } }, { "code": "N70", "description": "Salpingitis and oophoritis", "attributes": { "type": "any" } }, { "code": "N71", "description": "Inflammatory disease of uterus, except cervix", "attributes": { "type": "any" } }, { "code": "N72", "description": "Inflammatory disease of cervix uteri", "attributes": { "type": "any" } }, { "code": "N73", "description": "Other female pelvic inflammatory diseases", "attributes": { "type": "any" } }, { "code": "N74.3", "description": "Female gonococcal pelvic inflammatory disease", "attributes": { "type": "any" } }, { "code": "N74.4", "description": "Female chlamydial pelvic inflammatory disease", "attributes": { "type": "any" } }, { "code": "N74.8", "description": "Female pelvic inflammatory disorders in other diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "N75.1", "description": "Abscess of Bartholin's gland", "attributes": { "type": "any" } }, { "code": "P23.1", "description": "Congenital pneumonia due to Chlamydia", "attributes": { "type": "any" } }, { "code": "P23.2", "description": "Congenital pneumonia due to staphylococcus", "attributes": { "type": "any" } }, { "code": "P23.3", "description": "Congenital pneumonia due to streptococcus, group B", "attributes": { "type": "any" } }, { "code": "P23.4", "description": "Congenital pneumonia due to Escherichia coli", "attributes": { "type": "any" } }, { "code": "P23.5", "description": "Congenital pneumonia due to Pseudomonas", "attributes": { "type": "any" } }, { "code": "P23.6", "description": "Congenital pneumonia due to other bacterial agents", "attributes": { "type": "any" } }, { "code": "P36", "description": "Bacterial sepsis of newborn", "attributes": { "type": "any" } }, { "code": "P37.2", "description": "Neonatal (disseminated) listeriosis", "attributes": { "type": "any" } } ] }, { "concept_id": 9715, "concept_version_id": 17200, "concept_name": "Diagnoses - secondary ICD10", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH4117", "phenotype_version_id": 9335, "phenotype_name": "Bacterial Diseases (excl TB)", "code_attribute_header": [ "type" ], "codes": [ { "code": "A00", "description": "Cholera", "attributes": { "type": "any" } }, { "code": "A01", "description": "Typhoid and paratyphoid fevers", "attributes": { "type": "any" } }, { "code": "A02", "description": "Other salmonella infections", "attributes": { "type": "any" } }, { "code": "A03", "description": "Shigellosis", "attributes": { "type": "any" } }, { "code": "A04", "description": "Other bacterial intestinal infections", "attributes": { "type": "any" } }, { "code": "A05", "description": "Other bacterial foodborne intoxications, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A20", "description": "Plague", "attributes": { "type": "any" } }, { "code": "A21", "description": "Tularaemia", "attributes": { "type": "any" } }, { "code": "A22", "description": "Anthrax", "attributes": { "type": "any" } }, { "code": "A23", "description": "Brucellosis", "attributes": { "type": "any" } }, { "code": "A24", "description": "Glanders and melioidosis", "attributes": { "type": "any" } }, { "code": "A25", "description": "Rat-bite fevers", "attributes": { "type": "any" } }, { "code": "A26", "description": "Erysipeloid", "attributes": { "type": "any" } }, { "code": "A27", "description": "Leptospirosis", "attributes": { "type": "any" } }, { "code": "A28", "description": "Other zoonotic bacterial diseases, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A30", "description": "Leprosy [Hansen's disease]", "attributes": { "type": "any" } }, { "code": "A31", "description": "Infection due to other mycobacteria", "attributes": { "type": "any" } }, { "code": "A32", "description": "Listeriosis", "attributes": { "type": "any" } }, { "code": "A35", "description": "Other tetanus", "attributes": { "type": "any" } }, { "code": "A36", "description": "Diphtheria", "attributes": { "type": "any" } }, { "code": "A37", "description": "Whooping cough", "attributes": { "type": "any" } }, { "code": "A38", "description": "Scarlet fever", "attributes": { "type": "any" } }, { "code": "A39", "description": "Meningococcal infection", "attributes": { "type": "any" } }, { "code": "A40", "description": "Streptococcal sepsis", "attributes": { "type": "any" } }, { "code": "A41.0", "description": "Sepsis due to Staphylococcus aureus", "attributes": { "type": "any" } }, { "code": "A41.1", "description": "Sepsis due to other specified staphylococcus", "attributes": { "type": "any" } }, { "code": "A41.2", "description": "Sepsis due to unspecified staphylococcus", "attributes": { "type": "any" } }, { "code": "A41.3", "description": "Sepsis due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "A41.4", "description": "Sepsis due to anaerobes", "attributes": { "type": "any" } }, { "code": "A41.5", "description": "Sepsis due to other Gram-negative organisms", "attributes": { "type": "any" } }, { "code": "A42", "description": "Actinomycosis", "attributes": { "type": "any" } }, { "code": "A43", "description": "Nocardiosis", "attributes": { "type": "any" } }, { "code": "A44", "description": "Bartonellosis", "attributes": { "type": "any" } }, { "code": "A46", "description": "Erysipelas", "attributes": { "type": "any" } }, { "code": "A48", "description": "Other bacterial diseases, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A49", "description": "Bacterial infection of unspecified site", "attributes": { "type": "any" } }, { "code": "A50", "description": "Congenital syphilis", "attributes": { "type": "any" } }, { "code": "A51", "description": "Early syphilis", "attributes": { "type": "any" } }, { "code": "A52", "description": "Late syphilis", "attributes": { "type": "any" } }, { "code": "A53", "description": "Other and unspecified syphilis", "attributes": { "type": "any" } }, { "code": "A54", "description": "Gonococcal infection", "attributes": { "type": "any" } }, { "code": "A55", "description": "Chlamydial lymphogranuloma (venereum)", "attributes": { "type": "any" } }, { "code": "A56", "description": "Other sexually transmitted chlamydial diseases", "attributes": { "type": "any" } }, { "code": "A57", "description": "Chancroid", "attributes": { "type": "any" } }, { "code": "A58", "description": "Granuloma inguinale", "attributes": { "type": "any" } }, { "code": "A65", "description": "Nonvenereal syphilis", "attributes": { "type": "any" } }, { "code": "A66", "description": "Yaws", "attributes": { "type": "any" } }, { "code": "A67", "description": "Pinta [carate]", "attributes": { "type": "any" } }, { "code": "A68", "description": "Relapsing fevers", "attributes": { "type": "any" } }, { "code": "A69", "description": "Other spirochaetal infections", "attributes": { "type": "any" } }, { "code": "A70", "description": "Chlamydia psittaci infection", "attributes": { "type": "any" } }, { "code": "A71", "description": "Trachoma", "attributes": { "type": "any" } }, { "code": "A74", "description": "Other diseases caused by chlamydiae", "attributes": { "type": "any" } }, { "code": "A75", "description": "Typhus fever", "attributes": { "type": "any" } }, { "code": "A77", "description": "Spotted fever [tick-borne rickettsioses]", "attributes": { "type": "any" } }, { "code": "A78", "description": "Q fever", "attributes": { "type": "any" } }, { "code": "A79", "description": "Other rickettsioses", "attributes": { "type": "any" } }, { "code": "B20.1", "description": "HIV disease resulting in other bacterial infections", "attributes": { "type": "any" } }, { "code": "B92", "description": "Sequelae of leprosy", "attributes": { "type": "any" } }, { "code": "B94.0", "description": "Sequelae of trachoma", "attributes": { "type": "any" } }, { "code": "B95", "description": "Streptococcus and staphylococcus as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B96", "description": "Other specified bacterial agents as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B98.0", "description": "Helicobacter pylori [H.pylori] as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B98.1", "description": "Vibrio vulnificus as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "G00", "description": "Bacterial meningitis, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "G01", "description": "Meningitis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "G04.2", "description": "Bacterial meningoencephalitis and meningomyelitis, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "G05.0", "description": "Encephalitis, myelitis and encephalomyelitis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "H62.0", "description": "Otitis externa in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "H67.0", "description": "Otitis media in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I00", "description": "Rheumatic fever without mention of heart involvement", "attributes": { "type": "any" } }, { "code": "I01", "description": "Rheumatic fever with heart involvement", "attributes": { "type": "any" } }, { "code": "I02", "description": "Rheumatic chorea", "attributes": { "type": "any" } }, { "code": "I05", "description": "Rheumatic mitral valve diseases", "attributes": { "type": "any" } }, { "code": "I06", "description": "Rheumatic aortic valve diseases", "attributes": { "type": "any" } }, { "code": "I07", "description": "Rheumatic tricuspid valve diseases", "attributes": { "type": "any" } }, { "code": "I09", "description": "Other rheumatic heart diseases", "attributes": { "type": "any" } }, { "code": "I32.0", "description": "Pericarditis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I41.0", "description": "Myocarditis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I98.0", "description": "Cardiovascular syphilis", "attributes": { "type": "any" } }, { "code": "J02.0", "description": "Streptococcal pharyngitis", "attributes": { "type": "any" } }, { "code": "J03.0", "description": "Streptococcal tonsillitis", "attributes": { "type": "any" } }, { "code": "J13", "description": "Pneumonia due to Streptococcus pneumoniae", "attributes": { "type": "any" } }, { "code": "J14", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "J15", "description": "Bacterial pneumonia, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "J16.0", "description": "Chlamydial pneumonia", "attributes": { "type": "any" } }, { "code": "J17.0", "description": "Pneumonia in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "J20.0", "description": "Acute bronchitis due to Mycoplasma pneumoniae", "attributes": { "type": "any" } }, { "code": "J20.1", "description": "Acute bronchitis due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "J20.2", "description": "Acute bronchitis due to streptococcus", "attributes": { "type": "any" } }, { "code": "J34.0", "description": "Abscess, furuncle and carbuncle of nose", "attributes": { "type": "any" } }, { "code": "J36", "description": "Peritonsillar abscess", "attributes": { "type": "any" } }, { "code": "J39.0", "description": "Retropharyngeal and parapharyngeal abscess", "attributes": { "type": "any" } }, { "code": "J39.1", "description": "Other abscess of pharynx", "attributes": { "type": "any" } }, { "code": "J86", "description": "Pyothorax", "attributes": { "type": "any" } }, { "code": "K61", "description": "Abscess of anal and rectal regions", "attributes": { "type": "any" } }, { "code": "K63.0", "description": "Abscess of intestine", "attributes": { "type": "any" } }, { "code": "K67.0", "description": "Chlamydial peritonitis", "attributes": { "type": "any" } }, { "code": "K67.1", "description": "Gonococcal peritonitis", "attributes": { "type": "any" } }, { "code": "L00", "description": "Staphylococcal scalded skin syndrome", "attributes": { "type": "any" } }, { "code": "L01", "description": "Impetigo", "attributes": { "type": "any" } }, { "code": "L02", "description": "Cutaneous abscess, furuncle and carbuncle", "attributes": { "type": "any" } }, { "code": "L03", "description": "Cellulitis", "attributes": { "type": "any" } }, { "code": "L05.0", "description": "Pilonidal cyst with abscess", "attributes": { "type": "any" } }, { "code": "L08.1", "description": "Erythrasma", "attributes": { "type": "any" } }, { "code": "M00.0", "description": "Staphylococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.1", "description": "Pneumococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.2", "description": "Other streptococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.8", "description": "Arthritis and polyarthritis due to other specified bacterial agents", "attributes": { "type": "any" } }, { "code": "M00.9", "description": "Pyogenic arthritis, unspecified", "attributes": { "type": "any" } }, { "code": "M01.0", "description": "Meningococcal arthritis", "attributes": { "type": "any" } }, { "code": "M01.2", "description": "Arthritis in Lyme disease", "attributes": { "type": "any" } }, { "code": "M01.3", "description": "Arthritis in other bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "M03.0", "description": "Postmeningococcal arthritis", "attributes": { "type": "any" } }, { "code": "M03.1", "description": "Postinfective arthropathy in syphilis", "attributes": { "type": "any" } }, { "code": "M49.1", "description": "Brucella spondylitis", "attributes": { "type": "any" } }, { "code": "M49.2", "description": "Enterobacterial spondylitis", "attributes": { "type": "any" } }, { "code": "M63.0", "description": "Myositis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "M65.0", "description": "Abscess of tendon sheath", "attributes": { "type": "any" } }, { "code": "M65.1", "description": "Other infective (teno)synovitis", "attributes": { "type": "any" } }, { "code": "M68.0", "description": "Synovitis and tenosynovitis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "M71.0", "description": "Abscess of bursa", "attributes": { "type": "any" } }, { "code": "M71.1", "description": "Other infective bursitis", "attributes": { "type": "any" } }, { "code": "M72.6", "description": "Necrotizing fasciitis", "attributes": { "type": "any" } }, { "code": "M73.1", "description": "Syphilitic bursitis", "attributes": { "type": "any" } }, { "code": "M86", "description": "Osteomyelitis", "attributes": { "type": "any" } }, { "code": "M90.1", "description": "Periostitis in other infectious diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "M90.2", "description": "Osteopathy in other infectious diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "N13.6", "description": "Pyonephrosis", "attributes": { "type": "any" } }, { "code": "N15.1", "description": "Renal and perinephric abscess", "attributes": { "type": "any" } }, { "code": "N29.0", "description": "Late syphilis of kidney", "attributes": { "type": "any" } }, { "code": "N39.0", "description": "Urinary tract infection, site not specified", "attributes": { "type": "any" } }, { "code": "N41.0", "description": "Acute prostatitis", "attributes": { "type": "any" } }, { "code": "N41.2", "description": "Abscess of prostate", "attributes": { "type": "any" } }, { "code": "N41.3", "description": "Prostatocystitis", "attributes": { "type": "any" } }, { "code": "N43.1", "description": "Infected hydrocele", "attributes": { "type": "any" } }, { "code": "N45", "description": "Orchitis and epididymitis", "attributes": { "type": "any" } }, { "code": "N70", "description": "Salpingitis and oophoritis", "attributes": { "type": "any" } }, { "code": "N71", "description": "Inflammatory disease of uterus, except cervix", "attributes": { "type": "any" } }, { "code": "N72", "description": "Inflammatory disease of cervix uteri", "attributes": { "type": "any" } }, { "code": "N73", "description": "Other female pelvic inflammatory diseases", "attributes": { "type": "any" } }, { "code": "N74.3", "description": "Female gonococcal pelvic inflammatory disease", "attributes": { "type": "any" } }, { "code": "N74.4", "description": "Female chlamydial pelvic inflammatory disease", "attributes": { "type": "any" } }, { "code": "N74.8", "description": "Female pelvic inflammatory disorders in other diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "N75.1", "description": "Abscess of Bartholin's gland", "attributes": { "type": "any" } }, { "code": "P23.1", "description": "Congenital pneumonia due to Chlamydia", "attributes": { "type": "any" } }, { "code": "P23.2", "description": "Congenital pneumonia due to staphylococcus", "attributes": { "type": "any" } }, { "code": "P23.3", "description": "Congenital pneumonia due to streptococcus, group B", "attributes": { "type": "any" } }, { "code": "P23.4", "description": "Congenital pneumonia due to Escherichia coli", "attributes": { "type": "any" } }, { "code": "P23.5", "description": "Congenital pneumonia due to Pseudomonas", "attributes": { "type": "any" } }, { "code": "P23.6", "description": "Congenital pneumonia due to other bacterial agents", "attributes": { "type": "any" } }, { "code": "P36", "description": "Bacterial sepsis of newborn", "attributes": { "type": "any" } }, { "code": "P37.2", "description": "Neonatal (disseminated) listeriosis", "attributes": { "type": "any" } } ] }, { "concept_id": 9716, "concept_version_id": 17201, "concept_name": "Underlying (primary) cause of death: ICD10", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH4117", "phenotype_version_id": 9335, "phenotype_name": "Bacterial Diseases (excl TB)", "code_attribute_header": [ "type" ], "codes": [ { "code": "A00", "description": "Cholera", "attributes": { "type": "any" } }, { "code": "A01", "description": "Typhoid and paratyphoid fevers", "attributes": { "type": "any" } }, { "code": "A02", "description": "Other salmonella infections", "attributes": { "type": "any" } }, { "code": "A03", "description": "Shigellosis", "attributes": { "type": "any" } }, { "code": "A04", "description": "Other bacterial intestinal infections", "attributes": { "type": "any" } }, { "code": "A05", "description": "Other bacterial foodborne intoxications, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A20", "description": "Plague", "attributes": { "type": "any" } }, { "code": "A21", "description": "Tularaemia", "attributes": { "type": "any" } }, { "code": "A22", "description": "Anthrax", "attributes": { "type": "any" } }, { "code": "A23", "description": "Brucellosis", "attributes": { "type": "any" } }, { "code": "A24", "description": "Glanders and melioidosis", "attributes": { "type": "any" } }, { "code": "A25", "description": "Rat-bite fevers", "attributes": { "type": "any" } }, { "code": "A26", "description": "Erysipeloid", "attributes": { "type": "any" } }, { "code": "A27", "description": "Leptospirosis", "attributes": { "type": "any" } }, { "code": "A28", "description": "Other zoonotic bacterial diseases, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A30", "description": "Leprosy [Hansen's disease]", "attributes": { "type": "any" } }, { "code": "A31", "description": "Infection due to other mycobacteria", "attributes": { "type": "any" } }, { "code": "A32", "description": "Listeriosis", "attributes": { "type": "any" } }, { "code": "A35", "description": "Other tetanus", "attributes": { "type": "any" } }, { "code": "A36", "description": "Diphtheria", "attributes": { "type": "any" } }, { "code": "A37", "description": "Whooping cough", "attributes": { "type": "any" } }, { "code": "A38", "description": "Scarlet fever", "attributes": { "type": "any" } }, { "code": "A39", "description": "Meningococcal infection", "attributes": { "type": "any" } }, { "code": "A40", "description": "Streptococcal sepsis", "attributes": { "type": "any" } }, { "code": "A41.0", "description": "Sepsis due to Staphylococcus aureus", "attributes": { "type": "any" } }, { "code": "A41.1", "description": "Sepsis due to other specified staphylococcus", "attributes": { "type": "any" } }, { "code": "A41.2", "description": "Sepsis due to unspecified staphylococcus", "attributes": { "type": "any" } }, { "code": "A41.3", "description": "Sepsis due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "A41.4", "description": "Sepsis due to anaerobes", "attributes": { "type": "any" } }, { "code": "A41.5", "description": "Sepsis due to other Gram-negative organisms", "attributes": { "type": "any" } }, { "code": "A42", "description": "Actinomycosis", "attributes": { "type": "any" } }, { "code": "A43", "description": "Nocardiosis", "attributes": { "type": "any" } }, { "code": "A44", "description": "Bartonellosis", "attributes": { "type": "any" } }, { "code": "A46", "description": "Erysipelas", "attributes": { "type": "any" } }, { "code": "A48", "description": "Other bacterial diseases, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A49", "description": "Bacterial infection of unspecified site", "attributes": { "type": "any" } }, { "code": "A50", "description": "Congenital syphilis", "attributes": { "type": "any" } }, { "code": "A51", "description": "Early syphilis", "attributes": { "type": "any" } }, { "code": "A52", "description": "Late syphilis", "attributes": { "type": "any" } }, { "code": "A53", "description": "Other and unspecified syphilis", "attributes": { "type": "any" } }, { "code": "A54", "description": "Gonococcal infection", "attributes": { "type": "any" } }, { "code": "A55", "description": "Chlamydial lymphogranuloma (venereum)", "attributes": { "type": "any" } }, { "code": "A56", "description": "Other sexually transmitted chlamydial diseases", "attributes": { "type": "any" } }, { "code": "A57", "description": "Chancroid", "attributes": { "type": "any" } }, { "code": "A58", "description": "Granuloma inguinale", "attributes": { "type": "any" } }, { "code": "A65", "description": "Nonvenereal syphilis", "attributes": { "type": "any" } }, { "code": "A66", "description": "Yaws", "attributes": { "type": "any" } }, { "code": "A67", "description": "Pinta [carate]", "attributes": { "type": "any" } }, { "code": "A68", "description": "Relapsing fevers", "attributes": { "type": "any" } }, { "code": "A69", "description": "Other spirochaetal infections", "attributes": { "type": "any" } }, { "code": "A70", "description": "Chlamydia psittaci infection", "attributes": { "type": "any" } }, { "code": "A71", "description": "Trachoma", "attributes": { "type": "any" } }, { "code": "A74", "description": "Other diseases caused by chlamydiae", "attributes": { "type": "any" } }, { "code": "A75", "description": "Typhus fever", "attributes": { "type": "any" } }, { "code": "A77", "description": "Spotted fever [tick-borne rickettsioses]", "attributes": { "type": "any" } }, { "code": "A78", "description": "Q fever", "attributes": { "type": "any" } }, { "code": "A79", "description": "Other rickettsioses", "attributes": { "type": "any" } }, { "code": "B20.1", "description": "HIV disease resulting in other bacterial infections", "attributes": { "type": "any" } }, { "code": "B92", "description": "Sequelae of leprosy", "attributes": { "type": "any" } }, { "code": "B94.0", "description": "Sequelae of trachoma", "attributes": { "type": "any" } }, { "code": "B95", "description": "Streptococcus and staphylococcus as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B96", "description": "Other specified bacterial agents as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B98.0", "description": "Helicobacter pylori [H.pylori] as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B98.1", "description": "Vibrio vulnificus as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "G00", "description": "Bacterial meningitis, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "G01", "description": "Meningitis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "G04.2", "description": "Bacterial meningoencephalitis and meningomyelitis, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "G05.0", "description": "Encephalitis, myelitis and encephalomyelitis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "H62.0", "description": "Otitis externa in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "H67.0", "description": "Otitis media in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I00", "description": "Rheumatic fever without mention of heart involvement", "attributes": { "type": "any" } }, { "code": "I01", "description": "Rheumatic fever with heart involvement", "attributes": { "type": "any" } }, { "code": "I02", "description": "Rheumatic chorea", "attributes": { "type": "any" } }, { "code": "I05", "description": "Rheumatic mitral valve diseases", "attributes": { "type": "any" } }, { "code": "I06", "description": "Rheumatic aortic valve diseases", "attributes": { "type": "any" } }, { "code": "I07", "description": "Rheumatic tricuspid valve diseases", "attributes": { "type": "any" } }, { "code": "I09", "description": "Other rheumatic heart diseases", "attributes": { "type": "any" } }, { "code": "I32.0", "description": "Pericarditis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I41.0", "description": "Myocarditis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I98.0", "description": "Cardiovascular syphilis", "attributes": { "type": "any" } }, { "code": "J02.0", "description": "Streptococcal pharyngitis", "attributes": { "type": "any" } }, { "code": "J03.0", "description": "Streptococcal tonsillitis", "attributes": { "type": "any" } }, { "code": "J13", "description": "Pneumonia due to Streptococcus pneumoniae", "attributes": { "type": "any" } }, { "code": "J14", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "J15", "description": "Bacterial pneumonia, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "J16.0", "description": "Chlamydial pneumonia", "attributes": { "type": "any" } }, { "code": "J17.0", "description": "Pneumonia in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "J20.0", "description": "Acute bronchitis due to Mycoplasma pneumoniae", "attributes": { "type": "any" } }, { "code": "J20.1", "description": "Acute bronchitis due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "J20.2", "description": "Acute bronchitis due to streptococcus", "attributes": { "type": "any" } }, { "code": "J34.0", "description": "Abscess, furuncle and carbuncle of nose", "attributes": { "type": "any" } }, { "code": "J36", "description": "Peritonsillar abscess", "attributes": { "type": "any" } }, { "code": "J39.0", "description": "Retropharyngeal and parapharyngeal abscess", "attributes": { "type": "any" } }, { "code": "J39.1", "description": "Other abscess of pharynx", "attributes": { "type": "any" } }, { "code": "J86", "description": "Pyothorax", "attributes": { "type": "any" } }, { "code": "K61", "description": "Abscess of anal and rectal regions", "attributes": { "type": "any" } }, { "code": "K63.0", "description": "Abscess of intestine", "attributes": { "type": "any" } }, { "code": "K67.0", "description": "Chlamydial peritonitis", "attributes": { "type": "any" } }, { "code": "K67.1", "description": "Gonococcal peritonitis", "attributes": { "type": "any" } }, { "code": "L00", "description": "Staphylococcal scalded skin syndrome", "attributes": { "type": "any" } }, { "code": "L01", "description": "Impetigo", "attributes": { "type": "any" } }, { "code": "L02", "description": "Cutaneous abscess, furuncle and carbuncle", "attributes": { "type": "any" } }, { "code": "L03", "description": "Cellulitis", "attributes": { "type": "any" } }, { "code": "L05.0", "description": "Pilonidal cyst with abscess", "attributes": { "type": "any" } }, { "code": "L08.1", "description": "Erythrasma", "attributes": { "type": "any" } }, { "code": "M00.0", "description": "Staphylococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.1", "description": "Pneumococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.2", "description": "Other streptococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.8", "description": "Arthritis and polyarthritis due to other specified bacterial agents", "attributes": { "type": "any" } }, { "code": "M00.9", "description": "Pyogenic arthritis, unspecified", "attributes": { "type": "any" } }, { "code": "M01.0", "description": "Meningococcal arthritis", "attributes": { "type": "any" } }, { "code": "M01.2", "description": "Arthritis in Lyme disease", "attributes": { "type": "any" } }, { "code": "M01.3", "description": "Arthritis in other bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "M03.0", "description": "Postmeningococcal arthritis", "attributes": { "type": "any" } }, { "code": "M03.1", "description": "Postinfective arthropathy in syphilis", "attributes": { "type": "any" } }, { "code": "M49.1", "description": "Brucella spondylitis", "attributes": { "type": "any" } }, { "code": "M49.2", "description": "Enterobacterial spondylitis", "attributes": { "type": "any" } }, { "code": "M63.0", "description": "Myositis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "M65.0", "description": "Abscess of tendon sheath", "attributes": { "type": "any" } }, { "code": "M65.1", "description": "Other infective (teno)synovitis", "attributes": { "type": "any" } 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perinephric abscess", "attributes": { "type": "any" } }, { "code": "N29.0", "description": "Late syphilis of kidney", "attributes": { "type": "any" } }, { "code": "N39.0", "description": "Urinary tract infection, site not specified", "attributes": { "type": "any" } }, { "code": "N41.0", "description": "Acute prostatitis", "attributes": { "type": "any" } }, { "code": "N41.2", "description": "Abscess of prostate", "attributes": { "type": "any" } }, { "code": "N41.3", "description": "Prostatocystitis", "attributes": { "type": "any" } }, { "code": "N43.1", "description": "Infected hydrocele", "attributes": { "type": "any" } }, { "code": "N45", "description": "Orchitis and epididymitis", "attributes": { "type": "any" } }, { "code": "N70", "description": "Salpingitis and oophoritis", "attributes": { "type": "any" } }, { "code": "N71", "description": "Inflammatory disease of uterus, except cervix", "attributes": { "type": "any" } }, { "code": "N72", "description": "Inflammatory disease of 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"code": "P23.4", "description": "Congenital pneumonia due to Escherichia coli", "attributes": { "type": "any" } }, { "code": "P23.5", "description": "Congenital pneumonia due to Pseudomonas", "attributes": { "type": "any" } }, { "code": "P23.6", "description": "Congenital pneumonia due to other bacterial agents", "attributes": { "type": "any" } }, { "code": "P36", "description": "Bacterial sepsis of newborn", "attributes": { "type": "any" } }, { "code": "P37.2", "description": "Neonatal (disseminated) listeriosis", "attributes": { "type": "any" } } ] }, { "concept_id": 9717, "concept_version_id": 17202, "concept_name": "Contributory (secondary) causes of death: ICD10", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH4117", "phenotype_version_id": 9335, "phenotype_name": "Bacterial Diseases (excl TB)", "code_attribute_header": [ "type" ], "codes": [ { "code": "A00", "description": "Cholera", "attributes": { "type": "any" } }, { "code": "A01", "description": "Typhoid and paratyphoid fevers", "attributes": { "type": "any" } }, { "code": "A02", "description": "Other salmonella infections", "attributes": { "type": "any" } }, { "code": "A03", "description": "Shigellosis", "attributes": { "type": "any" } }, { "code": "A04", "description": "Other bacterial intestinal infections", "attributes": { "type": "any" } }, { "code": "A05", "description": "Other bacterial foodborne intoxications, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A20", "description": "Plague", "attributes": { "type": "any" } }, { "code": "A21", "description": "Tularaemia", "attributes": { "type": "any" } }, { "code": "A22", "description": "Anthrax", "attributes": { "type": "any" } }, { "code": "A23", "description": "Brucellosis", "attributes": { "type": "any" } }, { "code": "A24", "description": "Glanders and melioidosis", "attributes": { "type": "any" } }, { "code": "A25", "description": "Rat-bite fevers", "attributes": { "type": "any" } }, { "code": "A26", "description": "Erysipeloid", "attributes": { "type": "any" } }, { "code": "A27", "description": "Leptospirosis", "attributes": { "type": "any" } }, { "code": "A28", "description": "Other zoonotic bacterial diseases, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A30", "description": "Leprosy [Hansen's disease]", "attributes": { "type": "any" } }, { "code": "A31", "description": "Infection due to other mycobacteria", "attributes": { "type": "any" } }, { "code": "A32", "description": "Listeriosis", "attributes": { "type": "any" } }, { "code": "A35", "description": "Other tetanus", "attributes": { "type": "any" } }, { "code": "A36", "description": "Diphtheria", "attributes": { "type": "any" } }, { "code": "A37", "description": "Whooping cough", "attributes": { "type": "any" } }, { "code": "A38", "description": "Scarlet fever", "attributes": { "type": "any" } }, { "code": "A39", "description": "Meningococcal infection", "attributes": { "type": "any" } }, { "code": "A40", "description": "Streptococcal sepsis", "attributes": { "type": "any" } }, { "code": "A41.0", "description": "Sepsis due to Staphylococcus aureus", "attributes": { "type": "any" } }, { "code": "A41.1", "description": "Sepsis due to other specified staphylococcus", "attributes": { "type": "any" } }, { "code": "A41.2", "description": "Sepsis due to unspecified staphylococcus", "attributes": { "type": "any" } }, { "code": "A41.3", "description": "Sepsis due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "A41.4", "description": "Sepsis due to anaerobes", "attributes": { "type": "any" } }, { "code": "A41.5", "description": "Sepsis due to other Gram-negative organisms", "attributes": { "type": "any" } }, { "code": "A42", "description": "Actinomycosis", "attributes": { "type": "any" } }, { "code": "A43", "description": "Nocardiosis", "attributes": { "type": "any" } }, { "code": "A44", "description": "Bartonellosis", "attributes": { "type": "any" } }, { "code": "A46", "description": "Erysipelas", "attributes": { "type": "any" } }, { "code": "A48", "description": "Other bacterial diseases, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "A49", "description": "Bacterial infection of unspecified site", "attributes": { "type": "any" } }, { "code": "A50", "description": "Congenital syphilis", "attributes": { "type": "any" } }, { "code": "A51", "description": "Early syphilis", "attributes": { "type": "any" } }, { "code": "A52", "description": "Late syphilis", "attributes": { "type": "any" } }, { "code": "A53", "description": "Other and unspecified syphilis", "attributes": { "type": "any" } }, { "code": "A54", "description": "Gonococcal infection", "attributes": { "type": "any" } }, { "code": "A55", "description": "Chlamydial lymphogranuloma (venereum)", "attributes": { "type": "any" } }, { "code": "A56", "description": "Other sexually transmitted chlamydial diseases", "attributes": { "type": "any" } }, { "code": "A57", "description": "Chancroid", "attributes": { "type": "any" } }, { "code": "A58", "description": "Granuloma inguinale", "attributes": { "type": "any" } }, { "code": "A65", "description": "Nonvenereal syphilis", "attributes": { "type": "any" } }, { "code": "A66", "description": "Yaws", "attributes": { "type": "any" } }, { "code": "A67", "description": "Pinta [carate]", "attributes": { "type": "any" } }, { "code": "A68", "description": "Relapsing fevers", "attributes": { "type": "any" } }, { "code": "A69", "description": "Other spirochaetal infections", "attributes": { "type": "any" } }, { "code": "A70", "description": "Chlamydia psittaci infection", "attributes": { "type": "any" } }, { "code": "A71", "description": "Trachoma", "attributes": { "type": "any" } }, { "code": "A74", "description": "Other diseases caused by chlamydiae", "attributes": { "type": "any" } }, { "code": "A75", "description": "Typhus fever", "attributes": { "type": "any" } }, { "code": "A77", "description": "Spotted fever [tick-borne rickettsioses]", "attributes": { "type": "any" } }, { "code": "A78", "description": "Q fever", "attributes": { "type": "any" } }, { "code": "A79", "description": "Other rickettsioses", "attributes": { "type": "any" } }, { "code": "B20.1", "description": "HIV disease resulting in other bacterial infections", "attributes": { "type": "any" } }, { "code": "B92", "description": "Sequelae of leprosy", "attributes": { "type": "any" } }, { "code": "B94.0", "description": "Sequelae of trachoma", "attributes": { "type": "any" } }, { "code": "B95", "description": "Streptococcus and staphylococcus as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B96", "description": "Other specified bacterial agents as the cause of diseases classified to other chapters", "attributes": { "type": "any" } }, { "code": "B98.0", "description": "Helicobacter pylori [H.pylori] as the cause of 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"attributes": { "type": "any" } }, { "code": "I00", "description": "Rheumatic fever without mention of heart involvement", "attributes": { "type": "any" } }, { "code": "I01", "description": "Rheumatic fever with heart involvement", "attributes": { "type": "any" } }, { "code": "I02", "description": "Rheumatic chorea", "attributes": { "type": "any" } }, { "code": "I05", "description": "Rheumatic mitral valve diseases", "attributes": { "type": "any" } }, { "code": "I06", "description": "Rheumatic aortic valve diseases", "attributes": { "type": "any" } }, { "code": "I07", "description": "Rheumatic tricuspid valve diseases", "attributes": { "type": "any" } }, { "code": "I09", "description": "Other rheumatic heart diseases", "attributes": { "type": "any" } }, { "code": "I32.0", "description": "Pericarditis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I41.0", "description": "Myocarditis in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "I98.0", "description": "Cardiovascular syphilis", "attributes": { "type": "any" } }, { "code": "J02.0", "description": "Streptococcal pharyngitis", "attributes": { "type": "any" } }, { "code": "J03.0", "description": "Streptococcal tonsillitis", "attributes": { "type": "any" } }, { "code": "J13", "description": "Pneumonia due to Streptococcus pneumoniae", "attributes": { "type": "any" } }, { "code": "J14", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "type": "any" } }, { "code": "J15", "description": "Bacterial pneumonia, not elsewhere classified", "attributes": { "type": "any" } }, { "code": "J16.0", "description": "Chlamydial pneumonia", "attributes": { "type": "any" } }, { "code": "J17.0", "description": "Pneumonia in bacterial diseases classified elsewhere", "attributes": { "type": "any" } }, { "code": "J20.0", "description": "Acute bronchitis due to Mycoplasma pneumoniae", "attributes": { "type": "any" } }, { "code": 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"any" } }, { "code": "K67.1", "description": "Gonococcal peritonitis", "attributes": { "type": "any" } }, { "code": "L00", "description": "Staphylococcal scalded skin syndrome", "attributes": { "type": "any" } }, { "code": "L01", "description": "Impetigo", "attributes": { "type": "any" } }, { "code": "L02", "description": "Cutaneous abscess, furuncle and carbuncle", "attributes": { "type": "any" } }, { "code": "L03", "description": "Cellulitis", "attributes": { "type": "any" } }, { "code": "L05.0", "description": "Pilonidal cyst with abscess", "attributes": { "type": "any" } }, { "code": "L08.1", "description": "Erythrasma", "attributes": { "type": "any" } }, { "code": "M00.0", "description": "Staphylococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.1", "description": "Pneumococcal arthritis and polyarthritis", "attributes": { "type": "any" } }, { "code": "M00.2", "description": "Other streptococcal arthritis and polyarthritis", "attributes": { 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"ieuan.scanlon", "template": { "id": 2, "name": "BHF Data Science Centre Phenotype", "description": "BHF Data Science Centre Phenotype definitions that describe a list of clinical codes, algorithms using clinical codes, or set of clinical trials. 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