[
  {
    "phenotype_id": "PH4124",
    "phenotype_version_id": 9342,
    "name": "Benign neoplasm of stomach and duodenum",
    "definition": "Benign neoplasm of stomach and duodenum\n\nUKB baseline self reported fields.\n",
    "implementation": "The earliest record across all sources is obtained.\n",
    "publications": [
      {
        "doi": "https://doi.org/10.1038/s41598-025-05838-9",
        "details": "Torralbo, Ana and Davitte, Jonathan M. and Croteau-Chonka, Damien C. and Ytsma, Cai R. and Tomlinson, Christopher and Fitzpatrick, Natalie and Chung, Sheng-Chia and Fatemifar, Ghazaleh and Cortes, Adrian S. and Richardson, Tom G. and Barclay, Matthew and Carrasco Zanini Sanchez, Julia and Finan, Chris and Hemingway, Harry and Hingorani, Aroon D. and Kuan Po Ai, Valerie and Langenberg, Claudia and Lyratzopoulos, Georgios and Lumbers, Tom and Pietzner, Maik and Shah, Anoop Dinesh and Thygesen, Johan Hilge and Zelenka, Natalie and Whittaker, John C. and Ehm, Margaret G. and Denaxas, Spiros, A Computational Framework for Defining and Validating Reproducible Phenotyping Algorithms of 313 Diseases in the UK Biobank.",
        "primary": true
      }
    ],
    "validation": "Phenotypes underwent a multi\\-layered validation approach that included a) evaluating data source concordance, b) age\\-sex incidence and baseline prevalence patterns, c) an external comparison to a representative and unselected UK EHR dataset, d) modifiable risk factor associations, and e) genetic correlations with external genome\\-wide association studies (GWAS). Results showed consistent disease distributions by age and sex, high ranked correlation with general population prevalence estimates, confirmed risk factor associations, and significant genetic correlations with external GWAS.\n",
    "citation_requirements": null,
    "created": "2026-06-08T20:07:02.372641Z",
    "author": "Torralbo, A; Davitte, J M; Croteau-Chonka, D C; Ytsma, C; Tomlinson, C; Fitzpatrick, N K; Chung, S C; Fatemifar, G; Cortes, A S; Richardson, T G; Barclay, M; Carrasco Zanini, J; Finan, C; Hemingway, H; Hingorani, A; Kuan, V; Langenberg, C; Lyratzopoulos, G; Lumbers, R T; Pietzner, M; Shah, A D; Thygesen, J H; Zelenka, N; Whittaker, J C; Ehm, M G; Denaxas, S",
    "collections": [
      {
        "name": "Phenotype Library",
        "value": 18
      },
      {
        "name": "UK Biobank",
        "value": 32
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2026-06-08T20:07:02.366702Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "trials": null,
    "ontology": [
      {
        "name": "Benign neoplasm of stomach (disorder)",
        "value": 50809
      }
    ],
    "phenoflowid": null,
    "data_sources": [
      {
        "name": "UK Biobank",
        "value": 13,
        "uid": "6a9f93ad-2434-41d9-93bf-6e9d2eee04e5",
        "url": "https://healthdatagateway.org/en/dataset/700",
        "datasource_id": 700
      },
      {
        "name": "Patient Episode Dataset for Wales (PEDW)",
        "value": 40,
        "uid": "4c33a5d2-164c-41d7-9797-dc2b008cc852",
        "url": "https://healthdatagateway.org/en/dataset/318",
        "datasource_id": 318
      },
      {
        "name": "Scottish Cancer Registry (SMR06)",
        "value": 417,
        "uid": "ad36dc03-1856-44de-99b0-1af6f312d86b",
        "url": "https://healthdatagateway.org/en/dataset/79",
        "datasource_id": 79
      },
      {
        "name": "Cancer Registration Data",
        "value": 788,
        "uid": "6904a2ff-ab44-4dd6-b9ec-25d3cad29e43",
        "url": "https://healthdatagateway.org/en/dataset/880",
        "datasource_id": 880
      }
    ],
    "endorsements": null,
    "project_name": null,
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v3",
        "value": 6
      }
    ],
    "corresp_author": "Ana Torralbo",
    "event_date_range": null,
    "concept_information": [
      {
        "concept_id": 9758,
        "concept_version_id": 17243,
        "concept_name": "Diagnoses - main ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4124",
        "phenotype_version_id": 9342,
        "phenotype_name": "Benign neoplasm of stomach and duodenum",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "D13.1",
            "description": "Benign neoplasm: Stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "D13.2",
            "description": "Benign neoplasm: Duodenum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "D13.3",
            "description": "Benign neoplasm: Other and unspecified parts of small intestine",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "K31.7",
            "description": "Polyp of stomach and duodenum",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 9759,
        "concept_version_id": 17244,
        "concept_name": "Diagnoses - secondary ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4124",
        "phenotype_version_id": 9342,
        "phenotype_name": "Benign neoplasm of stomach and duodenum",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "D13.1",
            "description": "Benign neoplasm: Stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "D13.2",
            "description": "Benign neoplasm: Duodenum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "D13.3",
            "description": "Benign neoplasm: Other and unspecified parts of small intestine",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "K31.7",
            "description": "Polyp of stomach and duodenum",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 9760,
        "concept_version_id": 17245,
        "concept_name": "Underlying (primary) cause of death: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4124",
        "phenotype_version_id": 9342,
        "phenotype_name": "Benign neoplasm of stomach and duodenum",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "D13.1",
            "description": "Benign neoplasm: Stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "D13.2",
            "description": "Benign neoplasm: Duodenum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "D13.3",
            "description": "Benign neoplasm: Other and unspecified parts of small intestine",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "K31.7",
            "description": "Polyp of stomach and duodenum",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 9761,
        "concept_version_id": 17246,
        "concept_name": "Contributory (secondary) causes of death: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4124",
        "phenotype_version_id": 9342,
        "phenotype_name": "Benign neoplasm of stomach and duodenum",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "D13.1",
            "description": "Benign neoplasm: Stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "D13.2",
            "description": "Benign neoplasm: Duodenum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "D13.3",
            "description": "Benign neoplasm: Other and unspecified parts of small intestine",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "K31.7",
            "description": "Polyp of stomach and duodenum",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 9762,
        "concept_version_id": 17247,
        "concept_name": "GP clinical event records",
        "coding_system": {
          "id": 6,
          "name": "Read codes v3",
          "description": "Read codes v3"
        },
        "phenotype_id": "PH4124",
        "phenotype_version_id": 9342,
        "phenotype_name": "Benign neoplasm of stomach and duodenum",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "7612000.0",
            "description": "Open excision of polyp of stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B711.00",
            "description": "Benign neoplasm of stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B711000",
            "description": "Benign neoplasm of stomach cardia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B711100",
            "description": "Benign neoplasm of pylorus of stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B711.11",
            "description": "Gastric polyp",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B711200",
            "description": "Benign neoplasm of fundus of stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B711300",
            "description": "Benign neoplasm of body of stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B711400",
            "description": "Benign neoplasm of pyloric antrum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B711z00",
            "description": "Benign neoplasm of stomach NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B712.00",
            "description": "Benign neoplasm of small intestine and duodenum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B712000",
            "description": "Benign neoplasm of duodenum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B712011",
            "description": "Duodenal polyp",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B712100",
            "description": "Benign neoplasm of jejunum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B712111",
            "description": "Jejunal polyp",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B712200",
            "description": "Benign neoplasm of ileum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B712z00",
            "description": "Benign neoplasm of small intestine or duodenum NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J177.00",
            "description": "Gastric polyp",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J177.11",
            "description": "Polyp of stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J178.00",
            "description": "Duodenal polyp",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J178.11",
            "description": "Polyp of duodenum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "X3025",
            "description": "Gastric polyp",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "X78o1",
            "description": "Duodenal polyp",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 9763,
        "concept_version_id": 17248,
        "concept_name": "Type of cancer: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4124",
        "phenotype_version_id": 9342,
        "phenotype_name": "Benign neoplasm of stomach and duodenum",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "D13.1",
            "description": "Benign neoplasm: Stomach",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "D13.2",
            "description": "Benign neoplasm: Duodenum",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "D13.3",
            "description": "Benign neoplasm: Other and unspecified parts of small intestine",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "K31.7",
            "description": "Polyp of stomach and duodenum",
            "attributes": {
              "type": "any"
            }
          }
        ]
      }
    ],
    "status": 1,
    "doi": "https://doi.org/10.48533/3tsy-2t39",
    "is_deleted": false,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 2,
      "name": "BHF Data Science Centre Phenotype",
      "description": "BHF Data Science Centre Phenotype definitions that describe a list of clinical codes, algorithms using clinical codes, or set of clinical trials. Visit the BHF Data Science Centre website to learn more: https://bhfdatasciencecentre.org",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 9342,
        "version_name": "Benign neoplasm of stomach and duodenum",
        "version_date": "2026-06-08T20:07:02.378061Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]