[
  {
    "phenotype_id": "PH4187",
    "phenotype_version_id": 9405,
    "name": "Gastritis and duodenitis",
    "definition": "Inflammation of regions of the digestive tract (stomach lining and duodenum).\n\nUKB baseline self reported fields.\n",
    "implementation": "The earliest record across all sources is obtained.\n",
    "publications": [
      {
        "doi": "https://doi.org/10.1038/s41598-025-05838-9",
        "details": "Torralbo, Ana and Davitte, Jonathan M. and Croteau-Chonka, Damien C. and Ytsma, Cai R. and Tomlinson, Christopher and Fitzpatrick, Natalie and Chung, Sheng-Chia and Fatemifar, Ghazaleh and Cortes, Adrian S. and Richardson, Tom G. and Barclay, Matthew and Carrasco Zanini Sanchez, Julia and Finan, Chris and Hemingway, Harry and Hingorani, Aroon D. and Kuan Po Ai, Valerie and Langenberg, Claudia and Lyratzopoulos, Georgios and Lumbers, Tom and Pietzner, Maik and Shah, Anoop Dinesh and Thygesen, Johan Hilge and Zelenka, Natalie and Whittaker, John C. and Ehm, Margaret G. and Denaxas, Spiros, A Computational Framework for Defining and Validating Reproducible Phenotyping Algorithms of 313 Diseases in the UK Biobank.",
        "primary": true
      }
    ],
    "validation": "Phenotypes underwent a multi\\-layered validation approach that included a) evaluating data source concordance, b) age\\-sex incidence and baseline prevalence patterns, c) an external comparison to a representative and unselected UK EHR dataset, d) modifiable risk factor associations, and e) genetic correlations with external genome\\-wide association studies (GWAS). Results showed consistent disease distributions by age and sex, high ranked correlation with general population prevalence estimates, confirmed risk factor associations, and significant genetic correlations with external GWAS.\n",
    "citation_requirements": null,
    "created": "2026-06-08T20:10:22.425150Z",
    "author": "Torralbo, A; Davitte, J M; Croteau-Chonka, D C; Ytsma, C; Tomlinson, C; Fitzpatrick, N K; Chung, S C; Fatemifar, G; Cortes, A S; Richardson, T G; Barclay, M; Carrasco Zanini, J; Finan, C; Hemingway, H; Hingorani, A; Kuan, V; Langenberg, C; Lyratzopoulos, G; Lumbers, R T; Pietzner, M; Shah, A D; Thygesen, J H; Zelenka, N; Whittaker, J C; Ehm, M G; Denaxas, S",
    "collections": [
      {
        "name": "Phenotype Library",
        "value": 18
      },
      {
        "name": "UK Biobank",
        "value": 32
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2026-06-08T20:10:22.418661Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "trials": null,
    "ontology": [
      {
        "name": "Gastroduodenitis (disorder)",
        "value": 275149
      }
    ],
    "phenoflowid": null,
    "data_sources": [
      {
        "name": "UK Biobank",
        "value": 13,
        "uid": "6a9f93ad-2434-41d9-93bf-6e9d2eee04e5",
        "url": "https://healthdatagateway.org/en/dataset/700",
        "datasource_id": 700
      },
      {
        "name": "Patient Episode Dataset for Wales (PEDW)",
        "value": 40,
        "uid": "4c33a5d2-164c-41d7-9797-dc2b008cc852",
        "url": "https://healthdatagateway.org/en/dataset/318",
        "datasource_id": 318
      },
      {
        "name": "Scottish Cancer Registry (SMR06)",
        "value": 417,
        "uid": "ad36dc03-1856-44de-99b0-1af6f312d86b",
        "url": "https://healthdatagateway.org/en/dataset/79",
        "datasource_id": 79
      },
      {
        "name": "Cancer Registration Data",
        "value": 788,
        "uid": "6904a2ff-ab44-4dd6-b9ec-25d3cad29e43",
        "url": "https://healthdatagateway.org/en/dataset/880",
        "datasource_id": 880
      }
    ],
    "endorsements": null,
    "project_name": null,
    "coding_system": [
      {
        "name": "UKBioBank codes",
        "value": 12
      },
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v3",
        "value": 6
      }
    ],
    "corresp_author": "Ana Torralbo",
    "event_date_range": null,
    "concept_information": [
      {
        "concept_id": 10163,
        "concept_version_id": 17648,
        "concept_name": "Non-cancer illness code, self-reported",
        "coding_system": {
          "id": 12,
          "name": "UKBioBank codes",
          "description": "UKBioBank codes"
        },
        "phenotype_id": "PH4187",
        "phenotype_version_id": 9405,
        "phenotype_name": "Gastritis and duodenitis",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "1143",
            "description": "gastritis/gastric erosions",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10164,
        "concept_version_id": 17649,
        "concept_name": "Diagnoses - main ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4187",
        "phenotype_version_id": 9405,
        "phenotype_name": "Gastritis and duodenitis",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "K29",
            "description": "Gastritis and duodenitis",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10165,
        "concept_version_id": 17650,
        "concept_name": "Diagnoses - secondary ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4187",
        "phenotype_version_id": 9405,
        "phenotype_name": "Gastritis and duodenitis",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "K29",
            "description": "Gastritis and duodenitis",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10166,
        "concept_version_id": 17651,
        "concept_name": "Underlying (primary) cause of death: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4187",
        "phenotype_version_id": 9405,
        "phenotype_name": "Gastritis and duodenitis",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "K29",
            "description": "Gastritis and duodenitis",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10167,
        "concept_version_id": 17652,
        "concept_name": "Contributory (secondary) causes of death: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4187",
        "phenotype_version_id": 9405,
        "phenotype_name": "Gastritis and duodenitis",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "K29",
            "description": "Gastritis and duodenitis",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10168,
        "concept_version_id": 17653,
        "concept_name": "GP clinical event records",
        "coding_system": {
          "id": 6,
          "name": "Read codes v3",
          "description": "Read codes v3"
        },
        "phenotype_id": "PH4187",
        "phenotype_version_id": 9405,
        "phenotype_name": "Gastritis and duodenitis",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "A074313",
            "description": "Helicobacter gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J11z.11",
            "description": "Gastric erosions",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J123.00",
            "description": "Duodenal erosion",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J15..00",
            "description": "Gastritis and duodenitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J150.00",
            "description": "Acute gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J150000",
            "description": "Acute haemorrhagic gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J151.00",
            "description": "Chronic gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J151000",
            "description": "Chronic atrophic gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J151100",
            "description": "Chronic inflammatory gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J151200",
            "description": "Chronic superficial gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J151z00",
            "description": "Chronic gastritis NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J152.00",
            "description": "Gastric mucosal hypertrophy",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J153.00",
            "description": "Alcoholic gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J154.00",
            "description": "Other specified gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J154000",
            "description": "Allergic gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J154100",
            "description": "Bile induced gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J154200",
            "description": "Irritant gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J154300",
            "description": "Corrosive gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J154400",
            "description": "Helicobacter gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J154z00",
            "description": "Other specified gastritis NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J155.00",
            "description": "Gastritis unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J156.00",
            "description": "Gastroduodenitis unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J157.00",
            "description": "Duodenitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J15z.00",
            "description": "Gastritis and duodenitis NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J4z0.00",
            "description": "Non-infective gastritis NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "Jyu1200",
            "description": "[X]Other acute gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "Jyu1300",
            "description": "[X]Other gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "X301O",
            "description": "Acute haemorrhagic gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "X301R",
            "description": "Helicobacter gastritis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "X302G",
            "description": "Duodenal erosion",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "XE0aQ",
            "description": "Gastric ulcer NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "XE0Ql",
            "description": "Campylobacter gastrointestinal tract infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "ZV65316",
            "description": "[V]Dietary counselling in gastritis",
            "attributes": {
              "type": "any"
            }
          }
        ]
      }
    ],
    "status": 1,
    "doi": "https://doi.org/10.48533/71kj-8y90",
    "is_deleted": false,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 2,
      "name": "BHF Data Science Centre Phenotype",
      "description": "BHF Data Science Centre Phenotype definitions that describe a list of clinical codes, algorithms using clinical codes, or set of clinical trials. Visit the BHF Data Science Centre website to learn more: https://bhfdatasciencecentre.org",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 9405,
        "version_name": "Gastritis and duodenitis",
        "version_date": "2026-06-08T20:10:22.438166Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]