[
  {
    "phenotype_id": "PH4229",
    "phenotype_version_id": 9447,
    "name": "Lower Respiratory Tract Infections",
    "definition": "Lower Respiratory Tract Infections\n\nUKB baseline self reported fields.\n",
    "implementation": "The earliest record across all sources is obtained.\n",
    "publications": [
      {
        "doi": "https://doi.org/10.1038/s41598-025-05838-9",
        "details": "Torralbo, Ana and Davitte, Jonathan M. and Croteau-Chonka, Damien C. and Ytsma, Cai R. and Tomlinson, Christopher and Fitzpatrick, Natalie and Chung, Sheng-Chia and Fatemifar, Ghazaleh and Cortes, Adrian S. and Richardson, Tom G. and Barclay, Matthew and Carrasco Zanini Sanchez, Julia and Finan, Chris and Hemingway, Harry and Hingorani, Aroon D. and Kuan Po Ai, Valerie and Langenberg, Claudia and Lyratzopoulos, Georgios and Lumbers, Tom and Pietzner, Maik and Shah, Anoop Dinesh and Thygesen, Johan Hilge and Zelenka, Natalie and Whittaker, John C. and Ehm, Margaret G. and Denaxas, Spiros, A Computational Framework for Defining and Validating Reproducible Phenotyping Algorithms of 313 Diseases in the UK Biobank.",
        "primary": true
      }
    ],
    "validation": "Phenotypes underwent a multi\\-layered validation approach that included a) evaluating data source concordance, b) age\\-sex incidence and baseline prevalence patterns, c) an external comparison to a representative and unselected UK EHR dataset, d) modifiable risk factor associations, and e) genetic correlations with external genome\\-wide association studies (GWAS). Results showed consistent disease distributions by age and sex, high ranked correlation with general population prevalence estimates, confirmed risk factor associations, and significant genetic correlations with external GWAS.\n",
    "citation_requirements": null,
    "created": "2026-06-08T20:12:37.371514Z",
    "author": "Torralbo, A; Davitte, J M; Croteau-Chonka, D C; Ytsma, C; Tomlinson, C; Fitzpatrick, N K; Chung, S C; Fatemifar, G; Cortes, A S; Richardson, T G; Barclay, M; Carrasco Zanini, J; Finan, C; Hemingway, H; Hingorani, A; Kuan, V; Langenberg, C; Lyratzopoulos, G; Lumbers, R T; Pietzner, M; Shah, A D; Thygesen, J H; Zelenka, N; Whittaker, J C; Ehm, M G; Denaxas, S",
    "collections": [
      {
        "name": "Phenotype Library",
        "value": 18
      },
      {
        "name": "UK Biobank",
        "value": 32
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2026-06-08T20:12:37.366674Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "trials": null,
    "ontology": [
      {
        "name": "Lower respiratory tract infection (disorder)",
        "value": 162398
      }
    ],
    "phenoflowid": null,
    "data_sources": [
      {
        "name": "UK Biobank",
        "value": 13,
        "uid": "6a9f93ad-2434-41d9-93bf-6e9d2eee04e5",
        "url": "https://healthdatagateway.org/en/dataset/700",
        "datasource_id": 700
      },
      {
        "name": "Patient Episode Dataset for Wales (PEDW)",
        "value": 40,
        "uid": "4c33a5d2-164c-41d7-9797-dc2b008cc852",
        "url": "https://healthdatagateway.org/en/dataset/318",
        "datasource_id": 318
      },
      {
        "name": "Scottish Cancer Registry (SMR06)",
        "value": 417,
        "uid": "ad36dc03-1856-44de-99b0-1af6f312d86b",
        "url": "https://healthdatagateway.org/en/dataset/79",
        "datasource_id": 79
      },
      {
        "name": "Cancer Registration Data",
        "value": 788,
        "uid": "6904a2ff-ab44-4dd6-b9ec-25d3cad29e43",
        "url": "https://healthdatagateway.org/en/dataset/880",
        "datasource_id": 880
      }
    ],
    "endorsements": null,
    "project_name": null,
    "coding_system": [
      {
        "name": "UKBioBank codes",
        "value": 12
      },
      {
        "name": "ICD10 codes",
        "value": 4
      }
    ],
    "corresp_author": "Ana Torralbo",
    "event_date_range": null,
    "concept_information": [
      {
        "concept_id": 10417,
        "concept_version_id": 17902,
        "concept_name": "Non-cancer illness code, self-reported",
        "coding_system": {
          "id": 12,
          "name": "UKBioBank codes",
          "description": "UKBioBank codes"
        },
        "phenotype_id": "PH4229",
        "phenotype_version_id": 9447,
        "phenotype_name": "Lower Respiratory Tract Infections",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "1398",
            "description": "pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "1411",
            "description": "lung abscess",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "1498",
            "description": "empyema",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "1572",
            "description": "whooping cough / pertussis",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10418,
        "concept_version_id": 17903,
        "concept_name": "Diagnoses - main ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4229",
        "phenotype_version_id": 9447,
        "phenotype_name": "Lower Respiratory Tract Infections",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "A06.5",
            "description": "Amoebic lung abscess",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A15",
            "description": "Respiratory tuberculosis, bacteriologically and histologically confirmed",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A16",
            "description": "Respiratory tuberculosis, not confirmed bacteriologically or histologically",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A20.2",
            "description": "Pneumonic plague",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A21.2",
            "description": "Pulmonary tularaemia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A22.1",
            "description": "Pulmonary Anthrax",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A31.0",
            "description": "Pulmonary mycobacterial infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A37",
            "description": "Whooping cough",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A42.0",
            "description": "Pulmonary actinomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A43.0",
            "description": "Pulmonary nocardiosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B01.2",
            "description": "Varicella pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B05.2",
            "description": "Measles complicated by pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B25.0",
            "description": "Cytomegaloviral pneumonitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B37.1",
            "description": "Pulmonary candidiasis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.0",
            "description": "Acute pulmonary coccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.1",
            "description": "Chronic pulmonary coccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.2",
            "description": "Pulmonary coccidioidomycosis, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.0",
            "description": "Acute pulmonary histoplasmosis capsulati",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.1",
            "description": "Chronic pulmonary histoplasmosis capsulati",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.2",
            "description": "Pulmonary histoplasmosis capsulati, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.0",
            "description": "Acute pulmonary blastomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.1",
            "description": "Chronic pulmonary blastomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.2",
            "description": "Pulmonary blastomycosis, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B41.0",
            "description": "Pulmonary paracoccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B42.0",
            "description": "Pulmonary sporotrichosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B44.0",
            "description": "Invasive pulmonary aspergillosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B44.1",
            "description": "Other pulmonary aspergillosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B45.0",
            "description": "Pulmonary cryptococcosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B46.0",
            "description": "Pulmonary mucormycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B58.3",
            "description": "Pulmonary toxoplasmosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B59",
            "description": "Pneumocystosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B67.1",
            "description": "Echinococcus granulosus infection of lung",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J10.0",
            "description": "Influenza with pneumonia, other influenza virus identified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J11.0",
            "description": "Influenza with pneumonia, virus not identified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J12",
            "description": "Viral pneumonia, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J13",
            "description": "Pneumonia due to Streptococcus pneumoniae",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J14",
            "description": "Pneumonia due to Haemophilus influenzae",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J15",
            "description": "Bacterial pneumonia, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J16",
            "description": "Pneumonia due to other infectious organisms, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J17",
            "description": "Pneumonia in diseases classified elsewhere",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J18",
            "description": "Pneumonia, organism unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J20",
            "description": "Acute bronchitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J21",
            "description": "Acute bronchiolitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J22",
            "description": "Unspecified acute lower respiratory infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J44.0",
            "description": "Chronic obstructive pulmonary disease with acute lower respiratory infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J44.1",
            "description": "Chronic obstructive pulmonary disease with acute exacerbation, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J65",
            "description": "Pneumoconiosis associated with tuberculosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.0",
            "description": "Gangrene and necrosis of lung",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.1",
            "description": "Abscess of lung with pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.2",
            "description": "Abscess of lung without pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J86",
            "description": "Pyothorax",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "P23",
            "description": "Congenital pneumonia",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10419,
        "concept_version_id": 17904,
        "concept_name": "Diagnoses - secondary ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4229",
        "phenotype_version_id": 9447,
        "phenotype_name": "Lower Respiratory Tract Infections",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "A06.5",
            "description": "Amoebic lung abscess",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A15",
            "description": "Respiratory tuberculosis, bacteriologically and histologically confirmed",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A16",
            "description": "Respiratory tuberculosis, not confirmed bacteriologically or histologically",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A20.2",
            "description": "Pneumonic plague",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A21.2",
            "description": "Pulmonary tularaemia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A22.1",
            "description": "Pulmonary Anthrax",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A31.0",
            "description": "Pulmonary mycobacterial infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A37",
            "description": "Whooping cough",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A42.0",
            "description": "Pulmonary actinomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A43.0",
            "description": "Pulmonary nocardiosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B01.2",
            "description": "Varicella pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B05.2",
            "description": "Measles complicated by pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B25.0",
            "description": "Cytomegaloviral pneumonitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B37.1",
            "description": "Pulmonary candidiasis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.0",
            "description": "Acute pulmonary coccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.1",
            "description": "Chronic pulmonary coccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.2",
            "description": "Pulmonary coccidioidomycosis, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.0",
            "description": "Acute pulmonary histoplasmosis capsulati",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.1",
            "description": "Chronic pulmonary histoplasmosis capsulati",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.2",
            "description": "Pulmonary histoplasmosis capsulati, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.0",
            "description": "Acute pulmonary blastomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.1",
            "description": "Chronic pulmonary blastomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.2",
            "description": "Pulmonary blastomycosis, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B41.0",
            "description": "Pulmonary paracoccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B42.0",
            "description": "Pulmonary sporotrichosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B44.0",
            "description": "Invasive pulmonary aspergillosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B44.1",
            "description": "Other pulmonary aspergillosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B45.0",
            "description": "Pulmonary cryptococcosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B46.0",
            "description": "Pulmonary mucormycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B58.3",
            "description": "Pulmonary toxoplasmosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B59",
            "description": "Pneumocystosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B67.1",
            "description": "Echinococcus granulosus infection of lung",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J10.0",
            "description": "Influenza with pneumonia, other influenza virus identified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J11.0",
            "description": "Influenza with pneumonia, virus not identified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J12",
            "description": "Viral pneumonia, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J13",
            "description": "Pneumonia due to Streptococcus pneumoniae",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J14",
            "description": "Pneumonia due to Haemophilus influenzae",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J15",
            "description": "Bacterial pneumonia, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J16",
            "description": "Pneumonia due to other infectious organisms, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J17",
            "description": "Pneumonia in diseases classified elsewhere",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J18",
            "description": "Pneumonia, organism unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J20",
            "description": "Acute bronchitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J21",
            "description": "Acute bronchiolitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J22",
            "description": "Unspecified acute lower respiratory infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J44.0",
            "description": "Chronic obstructive pulmonary disease with acute lower respiratory infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J44.1",
            "description": "Chronic obstructive pulmonary disease with acute exacerbation, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J65",
            "description": "Pneumoconiosis associated with tuberculosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.0",
            "description": "Gangrene and necrosis of lung",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.1",
            "description": "Abscess of lung with pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.2",
            "description": "Abscess of lung without pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J86",
            "description": "Pyothorax",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "P23",
            "description": "Congenital pneumonia",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10420,
        "concept_version_id": 17905,
        "concept_name": "Underlying (primary) cause of death: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4229",
        "phenotype_version_id": 9447,
        "phenotype_name": "Lower Respiratory Tract Infections",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "A06.5",
            "description": "Amoebic lung abscess",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A15",
            "description": "Respiratory tuberculosis, bacteriologically and histologically confirmed",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A16",
            "description": "Respiratory tuberculosis, not confirmed bacteriologically or histologically",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A20.2",
            "description": "Pneumonic plague",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A21.2",
            "description": "Pulmonary tularaemia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A22.1",
            "description": "Pulmonary Anthrax",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A31.0",
            "description": "Pulmonary mycobacterial infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A37",
            "description": "Whooping cough",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A42.0",
            "description": "Pulmonary actinomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A43.0",
            "description": "Pulmonary nocardiosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B01.2",
            "description": "Varicella pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B05.2",
            "description": "Measles complicated by pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B25.0",
            "description": "Cytomegaloviral pneumonitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B37.1",
            "description": "Pulmonary candidiasis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.0",
            "description": "Acute pulmonary coccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.1",
            "description": "Chronic pulmonary coccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.2",
            "description": "Pulmonary coccidioidomycosis, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.0",
            "description": "Acute pulmonary histoplasmosis capsulati",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.1",
            "description": "Chronic pulmonary histoplasmosis capsulati",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.2",
            "description": "Pulmonary histoplasmosis capsulati, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.0",
            "description": "Acute pulmonary blastomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.1",
            "description": "Chronic pulmonary blastomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.2",
            "description": "Pulmonary blastomycosis, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B41.0",
            "description": "Pulmonary paracoccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B42.0",
            "description": "Pulmonary sporotrichosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B44.0",
            "description": "Invasive pulmonary aspergillosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B44.1",
            "description": "Other pulmonary aspergillosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B45.0",
            "description": "Pulmonary cryptococcosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B46.0",
            "description": "Pulmonary mucormycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B58.3",
            "description": "Pulmonary toxoplasmosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B59",
            "description": "Pneumocystosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B67.1",
            "description": "Echinococcus granulosus infection of lung",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J10.0",
            "description": "Influenza with pneumonia, other influenza virus identified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J11.0",
            "description": "Influenza with pneumonia, virus not identified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J12",
            "description": "Viral pneumonia, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J13",
            "description": "Pneumonia due to Streptococcus pneumoniae",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J14",
            "description": "Pneumonia due to Haemophilus influenzae",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J15",
            "description": "Bacterial pneumonia, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J16",
            "description": "Pneumonia due to other infectious organisms, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J17",
            "description": "Pneumonia in diseases classified elsewhere",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J18",
            "description": "Pneumonia, organism unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J20",
            "description": "Acute bronchitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J21",
            "description": "Acute bronchiolitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J22",
            "description": "Unspecified acute lower respiratory infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J44.0",
            "description": "Chronic obstructive pulmonary disease with acute lower respiratory infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J44.1",
            "description": "Chronic obstructive pulmonary disease with acute exacerbation, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J65",
            "description": "Pneumoconiosis associated with tuberculosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.0",
            "description": "Gangrene and necrosis of lung",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.1",
            "description": "Abscess of lung with pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.2",
            "description": "Abscess of lung without pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J86",
            "description": "Pyothorax",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "P23",
            "description": "Congenital pneumonia",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10421,
        "concept_version_id": 17906,
        "concept_name": "Contributory (secondary) causes of death: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4229",
        "phenotype_version_id": 9447,
        "phenotype_name": "Lower Respiratory Tract Infections",
        "code_attribute_header": [
          "type"
        ],
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          {
            "code": "A06.5",
            "description": "Amoebic lung abscess",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A15",
            "description": "Respiratory tuberculosis, bacteriologically and histologically confirmed",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A16",
            "description": "Respiratory tuberculosis, not confirmed bacteriologically or histologically",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A20.2",
            "description": "Pneumonic plague",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A21.2",
            "description": "Pulmonary tularaemia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A22.1",
            "description": "Pulmonary Anthrax",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A31.0",
            "description": "Pulmonary mycobacterial infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A37",
            "description": "Whooping cough",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A42.0",
            "description": "Pulmonary actinomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "A43.0",
            "description": "Pulmonary nocardiosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B01.2",
            "description": "Varicella pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B05.2",
            "description": "Measles complicated by pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B25.0",
            "description": "Cytomegaloviral pneumonitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B37.1",
            "description": "Pulmonary candidiasis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.0",
            "description": "Acute pulmonary coccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.1",
            "description": "Chronic pulmonary coccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B38.2",
            "description": "Pulmonary coccidioidomycosis, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.0",
            "description": "Acute pulmonary histoplasmosis capsulati",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.1",
            "description": "Chronic pulmonary histoplasmosis capsulati",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B39.2",
            "description": "Pulmonary histoplasmosis capsulati, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.0",
            "description": "Acute pulmonary blastomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.1",
            "description": "Chronic pulmonary blastomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B40.2",
            "description": "Pulmonary blastomycosis, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B41.0",
            "description": "Pulmonary paracoccidioidomycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B42.0",
            "description": "Pulmonary sporotrichosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B44.0",
            "description": "Invasive pulmonary aspergillosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B44.1",
            "description": "Other pulmonary aspergillosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B45.0",
            "description": "Pulmonary cryptococcosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B46.0",
            "description": "Pulmonary mucormycosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B58.3",
            "description": "Pulmonary toxoplasmosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B59",
            "description": "Pneumocystosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B67.1",
            "description": "Echinococcus granulosus infection of lung",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J10.0",
            "description": "Influenza with pneumonia, other influenza virus identified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J11.0",
            "description": "Influenza with pneumonia, virus not identified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J12",
            "description": "Viral pneumonia, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J13",
            "description": "Pneumonia due to Streptococcus pneumoniae",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J14",
            "description": "Pneumonia due to Haemophilus influenzae",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J15",
            "description": "Bacterial pneumonia, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J16",
            "description": "Pneumonia due to other infectious organisms, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J17",
            "description": "Pneumonia in diseases classified elsewhere",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J18",
            "description": "Pneumonia, organism unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J20",
            "description": "Acute bronchitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J21",
            "description": "Acute bronchiolitis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J22",
            "description": "Unspecified acute lower respiratory infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J44.0",
            "description": "Chronic obstructive pulmonary disease with acute lower respiratory infection",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J44.1",
            "description": "Chronic obstructive pulmonary disease with acute exacerbation, unspecified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J65",
            "description": "Pneumoconiosis associated with tuberculosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.0",
            "description": "Gangrene and necrosis of lung",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.1",
            "description": "Abscess of lung with pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J85.2",
            "description": "Abscess of lung without pneumonia",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J86",
            "description": "Pyothorax",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "P23",
            "description": "Congenital pneumonia",
            "attributes": {
              "type": "any"
            }
          }
        ]
      }
    ],
    "status": 1,
    "doi": "https://doi.org/10.48533/ka1k-dk68",
    "is_deleted": false,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 2,
      "name": "BHF Data Science Centre Phenotype",
      "description": "BHF Data Science Centre Phenotype definitions that describe a list of clinical codes, algorithms using clinical codes, or set of clinical trials. Visit the BHF Data Science Centre website to learn more: https://bhfdatasciencecentre.org",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 9447,
        "version_name": "Lower Respiratory Tract Infections",
        "version_date": "2026-06-08T20:12:37.378886Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]