[
  {
    "phenotype_id": "PH4279",
    "phenotype_version_id": 9497,
    "name": "Pleural effusion",
    "definition": "Presence of fluid in the pleural cavity resulting from excessive transudation or exudation from the pleural surfaces.\n\nUKB baseline self reported fields.\n",
    "implementation": "The earliest record across all sources is obtained.\n",
    "publications": [
      {
        "doi": "https://doi.org/10.1038/s41598-025-05838-9",
        "details": "Torralbo, Ana and Davitte, Jonathan M. and Croteau-Chonka, Damien C. and Ytsma, Cai R. and Tomlinson, Christopher and Fitzpatrick, Natalie and Chung, Sheng-Chia and Fatemifar, Ghazaleh and Cortes, Adrian S. and Richardson, Tom G. and Barclay, Matthew and Carrasco Zanini Sanchez, Julia and Finan, Chris and Hemingway, Harry and Hingorani, Aroon D. and Kuan Po Ai, Valerie and Langenberg, Claudia and Lyratzopoulos, Georgios and Lumbers, Tom and Pietzner, Maik and Shah, Anoop Dinesh and Thygesen, Johan Hilge and Zelenka, Natalie and Whittaker, John C. and Ehm, Margaret G. and Denaxas, Spiros, A Computational Framework for Defining and Validating Reproducible Phenotyping Algorithms of 313 Diseases in the UK Biobank.",
        "primary": true
      }
    ],
    "validation": "Phenotypes underwent a multi\\-layered validation approach that included a) evaluating data source concordance, b) age\\-sex incidence and baseline prevalence patterns, c) an external comparison to a representative and unselected UK EHR dataset, d) modifiable risk factor associations, and e) genetic correlations with external genome\\-wide association studies (GWAS). Results showed consistent disease distributions by age and sex, high ranked correlation with general population prevalence estimates, confirmed risk factor associations, and significant genetic correlations with external GWAS.\n",
    "citation_requirements": null,
    "created": "2026-06-08T20:15:22.753621Z",
    "author": "Torralbo, A; Davitte, J M; Croteau-Chonka, D C; Ytsma, C; Tomlinson, C; Fitzpatrick, N K; Chung, S C; Fatemifar, G; Cortes, A S; Richardson, T G; Barclay, M; Carrasco Zanini, J; Finan, C; Hemingway, H; Hingorani, A; Kuan, V; Langenberg, C; Lyratzopoulos, G; Lumbers, R T; Pietzner, M; Shah, A D; Thygesen, J H; Zelenka, N; Whittaker, J C; Ehm, M G; Denaxas, S",
    "collections": [
      {
        "name": "Phenotype Library",
        "value": 18
      },
      {
        "name": "UK Biobank",
        "value": 32
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2026-06-08T20:15:22.744703Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "trials": null,
    "ontology": [
      {
        "name": "Pleural effusion (disorder)",
        "value": 125441
      }
    ],
    "phenoflowid": null,
    "data_sources": [
      {
        "name": "UK Biobank",
        "value": 13,
        "uid": "6a9f93ad-2434-41d9-93bf-6e9d2eee04e5",
        "url": "https://healthdatagateway.org/en/dataset/700",
        "datasource_id": 700
      },
      {
        "name": "Patient Episode Dataset for Wales (PEDW)",
        "value": 40,
        "uid": "4c33a5d2-164c-41d7-9797-dc2b008cc852",
        "url": "https://healthdatagateway.org/en/dataset/318",
        "datasource_id": 318
      },
      {
        "name": "Scottish Cancer Registry (SMR06)",
        "value": 417,
        "uid": "ad36dc03-1856-44de-99b0-1af6f312d86b",
        "url": "https://healthdatagateway.org/en/dataset/79",
        "datasource_id": 79
      },
      {
        "name": "Cancer Registration Data",
        "value": 788,
        "uid": "6904a2ff-ab44-4dd6-b9ec-25d3cad29e43",
        "url": "https://healthdatagateway.org/en/dataset/880",
        "datasource_id": 880
      }
    ],
    "endorsements": null,
    "project_name": null,
    "coding_system": [
      {
        "name": "UKBioBank codes",
        "value": 12
      },
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v3",
        "value": 6
      }
    ],
    "corresp_author": "Ana Torralbo",
    "event_date_range": null,
    "concept_information": [
      {
        "concept_id": 10711,
        "concept_version_id": 18196,
        "concept_name": "Non-cancer illness code, self-reported",
        "coding_system": {
          "id": 12,
          "name": "UKBioBank codes",
          "description": "UKBioBank codes"
        },
        "phenotype_id": "PH4279",
        "phenotype_version_id": 9497,
        "phenotype_name": "Pleural effusion",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "1596",
            "description": "pleural effusion",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10712,
        "concept_version_id": 18197,
        "concept_name": "Diagnoses - main ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4279",
        "phenotype_version_id": 9497,
        "phenotype_name": "Pleural effusion",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "J90",
            "description": "Pleural effusion, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J91",
            "description": "Pleural effusion in conditions classified elsewhere",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10713,
        "concept_version_id": 18198,
        "concept_name": "Diagnoses - secondary ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4279",
        "phenotype_version_id": 9497,
        "phenotype_name": "Pleural effusion",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "J90",
            "description": "Pleural effusion, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J91",
            "description": "Pleural effusion in conditions classified elsewhere",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10714,
        "concept_version_id": 18199,
        "concept_name": "Underlying (primary) cause of death: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4279",
        "phenotype_version_id": 9497,
        "phenotype_name": "Pleural effusion",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "J90",
            "description": "Pleural effusion, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J91",
            "description": "Pleural effusion in conditions classified elsewhere",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10715,
        "concept_version_id": 18200,
        "concept_name": "Contributory (secondary) causes of death: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4279",
        "phenotype_version_id": 9497,
        "phenotype_name": "Pleural effusion",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "J90",
            "description": "Pleural effusion, not elsewhere classified",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "J91",
            "description": "Pleural effusion in conditions classified elsewhere",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10716,
        "concept_version_id": 18201,
        "concept_name": "GP clinical event records",
        "coding_system": {
          "id": 6,
          "name": "Read codes v3",
          "description": "Read codes v3"
        },
        "phenotype_id": "PH4279",
        "phenotype_version_id": 9497,
        "phenotype_name": "Pleural effusion",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "H511.00",
            "description": "Bacterial pleurisy with effusion",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H511000",
            "description": "Pneumococcal pleurisy with effusion",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H511100",
            "description": "Staphylococcal pleurisy with effusion",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H511200",
            "description": "Streptococcal pleurisy with effusion",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H511z00",
            "description": "Bacterial pleurisy with effusion NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51y.00",
            "description": "Other pleural effusion excluding mention of tuberculosis",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51y400",
            "description": "Hydrothorax",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51y500",
            "description": "Chylous effusion",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51y700",
            "description": "Malignant pleural effusion",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51yz00",
            "description": "Other pleural effusion",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51z.",
            "description": "Pleural effusion NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51z.00",
            "description": "Pleural effusion NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51z000",
            "description": "Exudative pleurisy NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51z100",
            "description": "Serofibrinous pleurisy NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51z200",
            "description": "Serous pleurisy NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "H51zz00",
            "description": "Pleural effusion NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "Hyu7000",
            "description": "[X]Pleural effusion in conditions classified elsewhere",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "Xa0IL",
            "description": "Malignant pleural effusion",
            "attributes": {
              "type": "any"
            }
          }
        ]
      }
    ],
    "status": 1,
    "doi": "https://doi.org/10.48533/bz3v-8z62",
    "is_deleted": false,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 2,
      "name": "BHF Data Science Centre Phenotype",
      "description": "BHF Data Science Centre Phenotype definitions that describe a list of clinical codes, algorithms using clinical codes, or set of clinical trials. Visit the BHF Data Science Centre website to learn more: https://bhfdatasciencecentre.org",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 9497,
        "version_name": "Pleural effusion",
        "version_date": "2026-06-08T20:15:22.760333Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]