[
  {
    "phenotype_id": "PH4304",
    "phenotype_version_id": 9522,
    "name": "Primary Malignancy_Oesophageal",
    "definition": "A gastrointestinal system cancer that is located_in the esophagus.\n\nUKB baseline self reported fields.\n",
    "implementation": "The earliest record across all sources is obtained.\n",
    "publications": [
      {
        "doi": "https://doi.org/10.1038/s41598-025-05838-9",
        "details": "Torralbo, Ana and Davitte, Jonathan M. and Croteau-Chonka, Damien C. and Ytsma, Cai R. and Tomlinson, Christopher and Fitzpatrick, Natalie and Chung, Sheng-Chia and Fatemifar, Ghazaleh and Cortes, Adrian S. and Richardson, Tom G. and Barclay, Matthew and Carrasco Zanini Sanchez, Julia and Finan, Chris and Hemingway, Harry and Hingorani, Aroon D. and Kuan Po Ai, Valerie and Langenberg, Claudia and Lyratzopoulos, Georgios and Lumbers, Tom and Pietzner, Maik and Shah, Anoop Dinesh and Thygesen, Johan Hilge and Zelenka, Natalie and Whittaker, John C. and Ehm, Margaret G. and Denaxas, Spiros, A Computational Framework for Defining and Validating Reproducible Phenotyping Algorithms of 313 Diseases in the UK Biobank.",
        "primary": true
      }
    ],
    "validation": "Phenotypes underwent a multi\\-layered validation approach that included a) evaluating data source concordance, b) age\\-sex incidence and baseline prevalence patterns, c) an external comparison to a representative and unselected UK EHR dataset, d) modifiable risk factor associations, and e) genetic correlations with external genome\\-wide association studies (GWAS). Results showed consistent disease distributions by age and sex, high ranked correlation with general population prevalence estimates, confirmed risk factor associations, and significant genetic correlations with external GWAS.\n",
    "citation_requirements": null,
    "created": "2026-06-08T20:16:37.031244Z",
    "author": "Torralbo, A; Davitte, J M; Croteau-Chonka, D C; Ytsma, C; Tomlinson, C; Fitzpatrick, N K; Chung, S C; Fatemifar, G; Cortes, A S; Richardson, T G; Barclay, M; Carrasco Zanini, J; Finan, C; Hemingway, H; Hingorani, A; Kuan, V; Langenberg, C; Lyratzopoulos, G; Lumbers, R T; Pietzner, M; Shah, A D; Thygesen, J H; Zelenka, N; Whittaker, J C; Ehm, M G; Denaxas, S",
    "collections": [
      {
        "name": "Phenotype Library",
        "value": 18
      },
      {
        "name": "UK Biobank",
        "value": 32
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2026-06-08T20:16:37.024383Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "trials": null,
    "ontology": [
      {
        "name": "Malignant tumor of esophagus (disorder)",
        "value": 152632
      }
    ],
    "phenoflowid": null,
    "data_sources": [
      {
        "name": "UK Biobank",
        "value": 13,
        "uid": "6a9f93ad-2434-41d9-93bf-6e9d2eee04e5",
        "url": "https://healthdatagateway.org/en/dataset/700",
        "datasource_id": 700
      },
      {
        "name": "Patient Episode Dataset for Wales (PEDW)",
        "value": 40,
        "uid": "4c33a5d2-164c-41d7-9797-dc2b008cc852",
        "url": "https://healthdatagateway.org/en/dataset/318",
        "datasource_id": 318
      },
      {
        "name": "Scottish Cancer Registry (SMR06)",
        "value": 417,
        "uid": "ad36dc03-1856-44de-99b0-1af6f312d86b",
        "url": "https://healthdatagateway.org/en/dataset/79",
        "datasource_id": 79
      },
      {
        "name": "Cancer Registration Data",
        "value": 788,
        "uid": "6904a2ff-ab44-4dd6-b9ec-25d3cad29e43",
        "url": "https://healthdatagateway.org/en/dataset/880",
        "datasource_id": 880
      }
    ],
    "endorsements": null,
    "project_name": null,
    "coding_system": [
      {
        "name": "UKBioBank codes",
        "value": 12
      },
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "Read codes v3",
        "value": 6
      }
    ],
    "corresp_author": "Ana Torralbo",
    "event_date_range": null,
    "concept_information": [
      {
        "concept_id": 10872,
        "concept_version_id": 18357,
        "concept_name": "Cancer code, self-reported",
        "coding_system": {
          "id": 12,
          "name": "UKBioBank codes",
          "description": "UKBioBank codes"
        },
        "phenotype_id": "PH4304",
        "phenotype_version_id": 9522,
        "phenotype_name": "Primary Malignancy_Oesophageal",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "1017",
            "description": "oesophageal cancer",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10873,
        "concept_version_id": 18358,
        "concept_name": "Diagnoses - main ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4304",
        "phenotype_version_id": 9522,
        "phenotype_name": "Primary Malignancy_Oesophageal",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "C15",
            "description": "Malignant neoplasm of oesophagus",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10874,
        "concept_version_id": 18359,
        "concept_name": "Diagnoses - secondary ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4304",
        "phenotype_version_id": 9522,
        "phenotype_name": "Primary Malignancy_Oesophageal",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "C15",
            "description": "Malignant neoplasm of oesophagus",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10875,
        "concept_version_id": 18360,
        "concept_name": "Underlying (primary) cause of death: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4304",
        "phenotype_version_id": 9522,
        "phenotype_name": "Primary Malignancy_Oesophageal",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "C15",
            "description": "Malignant neoplasm of oesophagus",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10876,
        "concept_version_id": 18361,
        "concept_name": "Contributory (secondary) causes of death: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4304",
        "phenotype_version_id": 9522,
        "phenotype_name": "Primary Malignancy_Oesophageal",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "C15",
            "description": "Malignant neoplasm of oesophagus",
            "attributes": {
              "type": "any"
            }
          }
        ]
      },
      {
        "concept_id": 10877,
        "concept_version_id": 18362,
        "concept_name": "GP clinical event records",
        "coding_system": {
          "id": 6,
          "name": "Read codes v3",
          "description": "Read codes v3"
        },
        "phenotype_id": "PH4304",
        "phenotype_version_id": 9522,
        "phenotype_name": "Primary Malignancy_Oesophageal",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "B10..00",
            "description": "Malignant neoplasm of oesophagus",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B100.00",
            "description": "Malignant neoplasm of cervical oesophagus",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B101.00",
            "description": "Malignant neoplasm of thoracic oesophagus",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B102.00",
            "description": "Malignant neoplasm of abdominal oesophagus",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B103.00",
            "description": "Malignant neoplasm of upper third of oesophagus",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B104.00",
            "description": "Malignant neoplasm of middle third of oesophagus",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B105.00",
            "description": "Malignant neoplasm of lower third of oesophagus",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B106.00",
            "description": "Malignant neoplasm, overlapping lesion of oesophagus",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B107.00",
            "description": "Siewert type I adenocarcinoma",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B10y.00",
            "description": "Malignant neoplasm of other specified part of oesophagus",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B10z.00",
            "description": "Malignant neoplasm of oesophagus NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "B10z.11",
            "description": "Oesophageal cancer",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "XaOrV",
            "description": "Siewert type I adenocarcinoma",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "XE1vQ",
            "description": "Malignant neoplasm of oesophagus NOS",
            "attributes": {
              "type": "any"
            }
          },
          {
            "code": "ZV10016",
            "description": "[V]Personal history of malignant neoplasm of oesophagus",
            "attributes": {
              "type": "prevalent"
            }
          }
        ]
      },
      {
        "concept_id": 10878,
        "concept_version_id": 18363,
        "concept_name": "Type of cancer: ICD10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4304",
        "phenotype_version_id": 9522,
        "phenotype_name": "Primary Malignancy_Oesophageal",
        "code_attribute_header": [
          "type"
        ],
        "codes": [
          {
            "code": "C15",
            "description": "Malignant neoplasm of oesophagus",
            "attributes": {
              "type": "any"
            }
          }
        ]
      }
    ],
    "status": 1,
    "doi": "https://doi.org/10.48533/5g2g-sm37",
    "is_deleted": false,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 2,
      "name": "BHF Data Science Centre Phenotype",
      "description": "BHF Data Science Centre Phenotype definitions that describe a list of clinical codes, algorithms using clinical codes, or set of clinical trials. Visit the BHF Data Science Centre website to learn more: https://bhfdatasciencecentre.org",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 9522,
        "version_name": "Primary Malignancy_Oesophageal",
        "version_date": "2026-06-08T20:16:37.041242Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]