[
  {
    "phenotype_id": "PH4434",
    "phenotype_version_id": 9716,
    "name": "CCU022_1 Bacterial infection NOS",
    "definition": "Phecode 41: Bacterial infection NOS\n",
    "implementation": "",
    "publications": [],
    "validation": "",
    "citation_requirements": "",
    "created": "2026-08-17T02:31:39.619794Z",
    "author": "Liu, H., Mizani, M. A., Zhao, Y., Wood, A., Inouye, M., Price, A. L., Jiang, X., on behalf of the CVD-COVID-UK/COVID-IMPACT Consortium",
    "collections": [
      {
        "name": "BHF Data Science Centre",
        "value": 20
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2026-08-17T04:35:55.512100Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "trials": [],
    "ontology": null,
    "phenoflowid": "",
    "data_sources": null,
    "endorsements": [],
    "project_name": "",
    "coding_system": [
      {
        "name": "SNOMED  CT codes",
        "value": 9
      },
      {
        "name": "ICD10 codes",
        "value": 4
      }
    ],
    "corresp_author": "",
    "event_date_range": "",
    "concept_information": [
      {
        "concept_id": 11489,
        "concept_version_id": 18974,
        "concept_name": "ICD-10",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH4434",
        "phenotype_version_id": 9716,
        "phenotype_name": "CCU022_1 Bacterial infection NOS",
        "code_attribute_header": null,
        "codes": [
          {
            "code": "A159",
            "description": "Respiratory tuberculosis unspecified, confirmed bacteriologically and histologically",
            "attributes": null
          },
          {
            "code": "A20",
            "description": "Plague",
            "attributes": null
          },
          {
            "code": "A200",
            "description": "Bubonic plague",
            "attributes": null
          },
          {
            "code": "A203",
            "description": "Plague meningitis",
            "attributes": null
          },
          {
            "code": "A208",
            "description": "Other forms of plague",
            "attributes": null
          },
          {
            "code": "A209",
            "description": "Plague, unspecified",
            "attributes": null
          },
          {
            "code": "A21",
            "description": "Tularaemia",
            "attributes": null
          },
          {
            "code": "A217",
            "description": "Generalized tularaemia",
            "attributes": null
          },
          {
            "code": "A218",
            "description": "Other forms of tularaemia",
            "attributes": null
          },
          {
            "code": "A219",
            "description": "Tularaemia, unspecified",
            "attributes": null
          },
          {
            "code": "A22",
            "description": "Anthrax",
            "attributes": null
          },
          {
            "code": "A228",
            "description": "Other forms of anthrax",
            "attributes": null
          },
          {
            "code": "A229",
            "description": "Anthrax, unspecified",
            "attributes": null
          },
          {
            "code": "A23",
            "description": "Brucellosis",
            "attributes": null
          },
          {
            "code": "A230",
            "description": "Brucellosis due to Brucella melitensis",
            "attributes": null
          },
          {
            "code": "A231",
            "description": "Brucellosis due to Brucella abortus",
            "attributes": null
          },
          {
            "code": "A232",
            "description": "Brucellosis due to Brucella suis",
            "attributes": null
          },
          {
            "code": "A233",
            "description": "Brucellosis due to Brucella canis",
            "attributes": null
          },
          {
            "code": "A238",
            "description": "Other brucellosis",
            "attributes": null
          },
          {
            "code": "A239",
            "description": "Brucellosis, unspecified",
            "attributes": null
          },
          {
            "code": "A24",
            "description": "Glanders and melioidosis",
            "attributes": null
          },
          {
            "code": "A240",
            "description": "Glanders",
            "attributes": null
          },
          {
            "code": "A241",
            "description": "Acute and fulminating melioidosis",
            "attributes": null
          },
          {
            "code": "A242",
            "description": "Subacute and chronic melioidosis",
            "attributes": null
          },
          {
            "code": "A243",
            "description": "Other melioidosis",
            "attributes": null
          },
          {
            "code": "A244",
            "description": "Melioidosis, unspecified",
            "attributes": null
          },
          {
            "code": "A25",
            "description": "Rat-bite fevers",
            "attributes": null
          },
          {
            "code": "A250",
            "description": "Spirillosis",
            "attributes": null
          },
          {
            "code": "A259",
            "description": "Rat-bite fever, unspecified",
            "attributes": null
          },
          {
            "code": "A26",
            "description": "Erysipeloid",
            "attributes": null
          },
          {
            "code": "A260",
            "description": "Cutaneous erysipeloid",
            "attributes": null
          },
          {
            "code": "A267",
            "description": "Erysipelothrix sepsis",
            "attributes": null
          },
          {
            "code": "A268",
            "description": "Other forms of erysipeloid",
            "attributes": null
          },
          {
            "code": "A269",
            "description": "Erysipeloid, unspecified",
            "attributes": null
          },
          {
            "code": "A280",
            "description": "Pasteurellosis",
            "attributes": null
          },
          {
            "code": "A282",
            "description": "Extraintestinal yersiniosis",
            "attributes": null
          },
          {
            "code": "A288",
            "description": "Other specified zoonotic bacterial diseases, not elsewhere classified",
            "attributes": null
          },
          {
            "code": "A289",
            "description": "Zoonotic bacterial disease, unspecified",
            "attributes": null
          },
          {
            "code": "A32",
            "description": "Listeriosis",
            "attributes": null
          },
          {
            "code": "A320",
            "description": "Cutaneous listeriosis",
            "attributes": null
          },
          {
            "code": "A321",
            "description": "Listerial meningitis and meningoencephalitis",
            "attributes": null
          },
          {
            "code": "A327",
            "description": "Listerial sepsis",
            "attributes": null
          },
          {
            "code": "A328",
            "description": "Other forms of listeriosis",
            "attributes": null
          },
          {
            "code": "A329",
            "description": "Listeriosis, unspecified",
            "attributes": null
          },
          {
            "code": "A35",
            "description": "Other tetanus",
            "attributes": null
          },
          {
            "code": "A36",
            "description": "Diphtheria",
            "attributes": null
          },
          {
            "code": "A368",
            "description": "Other diphtheria",
            "attributes": null
          },
          {
            "code": "A369",
            "description": "Diphtheria, unspecified",
            "attributes": null
          },
          {
            "code": "A37",
            "description": "Whooping cough",
            "attributes": null
          },
          {
            "code": "A370",
            "description": "Whooping cough due to Bordetella pertussis",
            "attributes": null
          },
          {
            "code": "A371",
            "description": "Whooping cough due to Bordetella parapertussis",
            "attributes": null
          },
          {
            "code": "A379",
            "description": "Whooping cough, unspecified",
            "attributes": null
          },
          {
            "code": "A38",
            "description": "Scarlet fever",
            "attributes": null
          },
          {
            "code": "A39",
            "description": "Meningococcal infection",
            "attributes": null
          },
          {
            "code": "A391",
            "description": "Waterhouse-Friderichsen syndrome",
            "attributes": null
          },
          {
            "code": "A398",
            "description": "Other meningococcal infections",
            "attributes": null
          },
          {
            "code": "A399",
            "description": "Meningococcal infection, unspecified",
            "attributes": null
          },
          {
            "code": "A401",
            "description": "Sepsis due to streptococcus, group B",
            "attributes": null
          },
          {
            "code": "A402",
            "description": "Sepsis due to streptococcus, group D and enterococcus",
            "attributes": null
          },
          {
            "code": "A42",
            "description": "Actinomycosis",
            "attributes": null
          },
          {
            "code": "A421",
            "description": "Abdominal actinomycosis",
            "attributes": null
          },
          {
            "code": "A422",
            "description": "Cervicofacial actinomycosis",
            "attributes": null
          },
          {
            "code": "A428",
            "description": "Other forms of actinomycosis",
            "attributes": null
          },
          {
            "code": "A429",
            "description": "Actinomycosis, unspecified",
            "attributes": null
          },
          {
            "code": "A43",
            "description": "Nocardiosis",
            "attributes": null
          },
          {
            "code": "A438",
            "description": "Other forms of nocardiosis",
            "attributes": null
          },
          {
            "code": "A439",
            "description": "Nocardiosis, unspecified",
            "attributes": null
          },
          {
            "code": "A480",
            "description": "Gas gangrene",
            "attributes": null
          },
          {
            "code": "A482",
            "description": "Nonpneumonic Legionnaires disease [Pontiac fever]",
            "attributes": null
          },
          {
            "code": "A483",
            "description": "Toxic shock syndrome",
            "attributes": null
          },
          {
            "code": "A484",
            "description": "Brazilian purpuric fever",
            "attributes": null
          },
          {
            "code": "A488",
            "description": "Other specified bacterial diseases",
            "attributes": null
          },
          {
            "code": "A49",
            "description": "Bacterial infection of unspecified site",
            "attributes": null
          },
          {
            "code": "A490",
            "description": "Staphylococcal infection, unspecified site",
            "attributes": null
          },
          {
            "code": "A491",
            "description": "Streptococcal and enterococcal infection, unspecified site",
            "attributes": null
          },
          {
            "code": "A492",
            "description": "Haemophilus influenzae infection, unspecified site",
            "attributes": null
          },
          {
            "code": "A493",
            "description": "Mycoplasma infection, unspecified site",
            "attributes": null
          },
          {
            "code": "A498",
            "description": "Other bacterial infections of unspecified site",
            "attributes": null
          },
          {
            "code": "A499",
            "description": "Bacterial infection, unspecified",
            "attributes": null
          },
          {
            "code": "B47",
            "description": "Mycetoma",
            "attributes": null
          },
          {
            "code": "B471",
            "description": "Actinomycetoma",
            "attributes": null
          },
          {
            "code": "B479",
            "description": "Mycetoma, unspecified",
            "attributes": null
          },
          {
            "code": "B950",
            "description": "Streptococcus, group A, as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B951",
            "description": "Streptococcus, group B, as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B952",
            "description": "Streptococcus group D and enterococcus as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B953",
            "description": "Streptococcus pneumoniae as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B954",
            "description": "Other streptococcus as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B955",
            "description": "Unspecified streptococcus as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B956",
            "description": "Staphylococcus aureus as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B957",
            "description": "Other staphylococcus as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B958",
            "description": "Unspecified staphylococcus as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B962",
            "description": "Escherichia coli [E. coli] as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B963",
            "description": "Haemophilus influenzae [H. influenzae] as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B964",
            "description": "Proteus (mirabilis)(morganii) as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B965",
            "description": "Pseudomonas (aeruginosa) as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B966",
            "description": "Bacillus fragilis [B. fragilis] as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B967",
            "description": "Clostridium perfringens [C. perfringens] as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "B968",
            "description": "Other specified bacterial agents as the cause of diseases classified to other chapters",
            "attributes": null
          },
          {
            "code": "I00",
            "description": "Rheumatic fever without mention of heart involvement",
            "attributes": null
          },
          {
            "code": "I01",
            "description": "Rheumatic fever with heart involvement",
            "attributes": null
          },
          {
            "code": "I02",
            "description": "Rheumatic chorea",
            "attributes": null
          },
          {
            "code": "I029",
            "description": "Rheumatic chorea without heart involvement",
            "attributes": null
          },
          {
            "code": "J030",
            "description": "Streptococcal tonsillitis",
            "attributes": null
          },
          {
            "code": "J200",
            "description": "Acute bronchitis due to Mycoplasma pneumoniae",
            "attributes": null
          },
          {
            "code": "J201",
            "description": "Acute bronchitis due to Haemophilus influenzae",
            "attributes": null
          },
          {
            "code": "J202",
            "description": "Acute bronchitis due to streptococcus",
            "attributes": null
          },
          {
            "code": "M000",
            "description": "Staphylococcal arthritis and polyarthritis",
            "attributes": null
          },
          {
            "code": "M001",
            "description": "Pneumococcal arthritis and polyarthritis",
            "attributes": null
          },
          {
            "code": "M002",
            "description": "Other streptococcal arthritis and polyarthritis",
            "attributes": null
          }
        ]
      },
      {
        "concept_id": 11490,
        "concept_version_id": 18975,
        "concept_name": "SNOMED",
        "coding_system": {
          "id": 9,
          "name": "SNOMED  CT codes",
          "description": "SNOMED CT codes"
        },
        "phenotype_id": "PH4434",
        "phenotype_version_id": 9716,
        "phenotype_name": "CCU022_1 Bacterial infection NOS",
        "code_attribute_header": null,
        "codes": [
          {
            "code": "10625351000119104",
            "description": "Bronchopneumonia caused by methicillin resistant Staphylococcus aureus (disorder)",
            "attributes": null
          },
          {
            "code": "10629231000119108",
            "description": "Recurrent acute streptococcal tonsillitis (disorder)",
            "attributes": null
          },
          {
            "code": "1090001000119105",
            "description": "Otitis media due to scarlet fever (disorder)",
            "attributes": null
          },
          {
            "code": "1090211000119102",
            "description": "Pharyngeal diphtheria (disorder)",
            "attributes": null
          },
          {
            "code": "1092951000119106",
            "description": "Pneumonia caused by Bordetella parapertussis (disorder)",
            "attributes": null
          },
          {
            "code": "11389007",
            "description": "Inhalational anthrax (disorder)",
            "attributes": null
          },
          {
            "code": "11461005",
            "description": "Staphylococcal tonsillitis (disorder)",
            "attributes": null
          },
          {
            "code": "1149066008",
            "description": "Chronic pancarditis due to rheumatic heart disease (disorder)",
            "attributes": null
          },
          {
            "code": "124691000119101",
            "description": "Pneumonia caused by methicillin resistant Staphylococcus aureus (disorder)",
            "attributes": null
          },
          {
            "code": "15682004",
            "description": "Anterior nasal diphtheria (disorder)",
            "attributes": null
          },
          {
            "code": "19021002",
            "description": "Haemophilus influenzae otitis media (disorder)",
            "attributes": null
          },
          {
            "code": "192650000",
            "description": "Meningitis caused by pertussis (disorder)",
            "attributes": null
          },
          {
            "code": "195659006",
            "description": "Acute pneumococcal pharyngitis (disorder)",
            "attributes": null
          },
          {
            "code": "195660001",
            "description": "Acute staphylococcal pharyngitis (disorder)",
            "attributes": null
          },
          {
            "code": "195672007",
            "description": "Acute pneumococcal tonsillitis (disorder)",
            "attributes": null
          },
          {
            "code": "195673002",
            "description": "Acute staphylococcal tonsillitis (disorder)",
            "attributes": null
          },
          {
            "code": "195719000",
            "description": "Acute pneumococcal bronchitis (disorder)",
            "attributes": null
          },
          {
            "code": "195720006",
            "description": "Acute streptococcal bronchitis (disorder)",
            "attributes": null
          },
          {
            "code": "195721005",
            "description": "Acute haemophilus influenzae bronchitis (disorder)",
            "attributes": null
          },
          {
            "code": "195722003",
            "description": "Acute Moraxella catarrhalis bronchitis (disorder)",
            "attributes": null
          },
          {
            "code": "195888009",
            "description": "Proteus pneumonia (disorder)",
            "attributes": null
          },
          {
            "code": "195902009",
            "description": "Anthrax pneumonia (disorder)",
            "attributes": null
          },
          {
            "code": "195908008",
            "description": "Actinomycotic pneumonia (disorder)",
            "attributes": null
          },
          {
            "code": "195909000",
            "description": "Nocardial pneumonia (disorder)",
            "attributes": null
          },
          {
            "code": "197303009",
            "description": "Bacterial portal cirrhosis (disorder)",
            "attributes": null
          },
          {
            "code": "2087000",
            "description": "Pulmonary nocardiosis (disorder)",
            "attributes": null
          },
          {
            "code": "21846001",
            "description": "Pulmonary actinomycosis (disorder)",
            "attributes": null
          },
          {
            "code": "232230009",
            "description": "Malignant otitis externa caused by Pseudomonas aeruginosa (disorder)",
            "attributes": null
          },
          {
            "code": "232402006",
            "description": "Meningococcal pharyngitis (disorder)",
            "attributes": null
          },
          {
            "code": "233599001",
            "description": "Acute mycoplasmal bronchitis (disorder)",
            "attributes": null
          },
          {
            "code": "233608005",
            "description": "Meningococcal pneumonia (disorder)",
            "attributes": null
          },
          {
            "code": "23698009",
            "description": "Staphylococcal pleurisy with effusion (disorder)",
            "attributes": null
          },
          {
            "code": "240387006",
            "description": "Pulmonary glanders (disorder)",
            "attributes": null
          },
          {
            "code": "240391001",
            "description": "Pulmonary melioidosis (disorder)",
            "attributes": null
          },
          {
            "code": "240422004",
            "description": "Tracheobronchial diphtheria (disorder)",
            "attributes": null
          },
          {
            "code": "26484003",
            "description": "Bordetellosis (disorder)",
            "attributes": null
          },
          {
            "code": "271567008",
            "description": "Whooping cough-like syndrome (disorder)",
            "attributes": null
          },
          {
            "code": "27836007",
            "description": "Pertussis (disorder)",
            "attributes": null
          },
          {
            "code": "32204007",
            "description": "Pulmonary actinobacillosis (disorder)",
            "attributes": null
          },
          {
            "code": "3419005",
            "description": "Faucial diphtheria (disorder)",
            "attributes": null
          },
          {
            "code": "35339003",
            "description": "Primary pneumonic plague (disorder)",
            "attributes": null
          },
          {
            "code": "38877003",
            "description": "Rheumatoid arthritis with aortitis (disorder)",
            "attributes": null
          },
          {
            "code": "38976008",
            "description": "Pneumonic plague (disorder)",
            "attributes": null
          },
          {
            "code": "40600002",
            "description": "Pneumococcal bronchitis (disorder)",
            "attributes": null
          },
          {
            "code": "408682005",
            "description": "Healthcare associated pertussis (disorder)",
            "attributes": null
          },
          {
            "code": "415724006",
            "description": "Tonsillitis caused by Gram negative bacteria (disorder)",
            "attributes": null
          },
          {
            "code": "41582007",
            "description": "Streptococcal tonsillitis (disorder)",
            "attributes": null
          },
          {
            "code": "424327005",
            "description": "Tonsillar actinomycosis (disorder)",
            "attributes": null
          },
          {
            "code": "45556008",
            "description": "Pulmonary tularemia (disorder)",
            "attributes": null
          },
          {
            "code": "50215002",
            "description": "Laryngeal diphtheria (disorder)",
            "attributes": null
          },
          {
            "code": "58217006",
            "description": "Infection caused by Bordetella bronchiseptica (disorder)",
            "attributes": null
          },
          {
            "code": "58576005",
            "description": "Haemophilus influenzae epiglottitis (disorder)",
            "attributes": null
          },
          {
            "code": "59475000",
            "description": "Pneumonia in pertussis (disorder)",
            "attributes": null
          },
          {
            "code": "67525007",
            "description": "Secondary pneumonic plague (disorder)",
            "attributes": null
          },
          {
            "code": "700220003",
            "description": "Acute bacterial otitis externa (disorder)",
            "attributes": null
          },
          {
            "code": "7097001",
            "description": "Streptococcal pleurisy with effusion (disorder)",
            "attributes": null
          },
          {
            "code": "713545009",
            "description": "Infection caused by Nocardia co-occurrent with human immunodeficiency virus infection (disorder)",
            "attributes": null
          },
          {
            "code": "718232007",
            "description": "Pyogenic bacterial infection due to deficiency of myeloid differentiation primary response 88 (disorder)",
            "attributes": null
          },
          {
            "code": "721741006",
            "description": "Sinusitis caused by Streptococcus pneumoniae (disorder)",
            "attributes": null
          },
          {
            "code": "721742004",
            "description": "Otitis media caused by Streptococcus pneumoniae (disorder)",
            "attributes": null
          },
          {
            "code": "721755003",
            "description": "Sinusitis caused by Haemophilus influenzae (disorder)",
            "attributes": null
          },
          {
            "code": "72409005",
            "description": "Rhinoscleroma (disorder)",
            "attributes": null
          },
          {
            "code": "73414003",
            "description": "Haemophilus influenzae laryngotracheobronchitis (disorder)",
            "attributes": null
          },
          {
            "code": "7548000",
            "description": "Rheumatic pneumonia (disorder)",
            "attributes": null
          },
          {
            "code": "75589004",
            "description": "Nasopharyngeal diphtheria (disorder)",
            "attributes": null
          },
          {
            "code": "763888005",
            "description": "Necrotizing pneumonia caused by Panton-Valentine leukocidin producing Staphylococcus aureus (disorder)",
            "attributes": null
          },
          {
            "code": "77116006",
            "description": "Infection caused by Bordetella parapertussis (disorder)",
            "attributes": null
          },
          {
            "code": "82670009",
            "description": "Whooping cough caused by organism other than Bordetella pertussis (disorder)",
            "attributes": null
          },
          {
            "code": "85420008",
            "description": "Streptococcal pleurisy (disorder)",
            "attributes": null
          }
        ]
      }
    ],
    "status": 1,
    "doi": "https://doi.org/10.48533/94jm-je19",
    "is_deleted": false,
    "publish_status": 2,
    "owner": "Hongjiao.Liu",
    "template": {
      "id": 2,
      "name": "BHF Data Science Centre Phenotype",
      "description": "BHF Data Science Centre Phenotype definitions that describe a list of clinical codes, algorithms using clinical codes, or set of clinical trials. Visit the BHF Data Science Centre website to learn more: https://bhfdatasciencecentre.org",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 9716,
        "version_name": "CCU022_1 Bacterial infection NOS",
        "version_date": "2026-08-17T04:35:55.527297Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]