[ { "phenotype_id": "PH487", "phenotype_version_id": 974, "name": "Respiratory Tract Infection", "definition": "Objective:\n\nTo investigate the association between smoking status and smoking cessation with mortality in patients with rheumatoid arthritis (RA).\n\n\nMethods:\n\nAn incident cohort of patients with RA was identified using the Clinical Practice Research Datalink, a database of UK primary care electronic medical records. Time-varying smoking status, years of cessation, and amount smoked were determined frompatients’medical records. The date and underlying cause of deathwere identified by linkagewith Office for National Statistics records. The associations between smoking status and smoking cessation with all-cause and causespecific mortality (circulatory disease, all cancers, lung cancer, respiratory disease, and respiratory infection) were investigated using adjusted Cox (all-causemortality) and Fine-Gray (cause-specificmortality) regression.\n\n\nResults: \n\nThe cohort comprised 5,677 patients (median age 61.4 years, 68% women), with 40% as never smokers, 34% former smokers, and 26% current smokers at baseline. Compared to never smoking, current smokingwas associated with an increased risk of all-causemortality (hazard ratio 1.98 [95% confidence interval (95% CI) 1.56, 2.53]), andmortality due to circulatory disease (subdistribution hazard ratio [SHR] 1.96 [95% CI 1.33, 2.90]) and lung cancer (SHR 23.2 [95% CI 5.15, 105]). Each year of smoking cessation was associated with a decreased risk of all-cause mortality (former heavy smokers SHR 0.85 [95% CI 0.77, 0.94], former light smokers SHR 0.90 [95%CI 0.84, 0.97]).\n\n\nConclusion: \n\nCurrent smoking is associated with an increased risk of all-cause, cardiovascular, and lung cancermortality in patientswith RA. Each year of cessation is associated with a reduced risk of all-causemortality. This information may prove helpful in smoking cessation programs for patients with RA.\n\n\n\n\n\n\n\n\n", "implementation": "", "publications": [ { "doi": null, "details": "Rebecca M Joseph, Mohammad Movahedi, William G Dixon, Deborah P M Symmons, Smoking-Related Mortality in Patients With Early Rheumatoid Arthritis: A Retrospective Cohort Study Using the Clinical Practice Research Datalink. Authritis Care and Research, 68(11), 1598-1606, 2016." } ], "validation": "", "citation_requirements": "", "created": "2021-10-06T16:21:45.592216Z", "author": "Rebecca M Joseph, Mohammad Movahedi, William G Dixon, Deborah P M Symmons", "collections": [ { "name": "ClinicalCodes Repository", "value": 25 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2021-10-06T16:21:45.592244Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "", "data_sources": [ { "name": "CPRD GOLD", "value": 5, "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f", "url": "https://healthdatagateway.org/en/dataset/694", "datasource_id": 694 } ], "coding_system": [ { "name": "ICD10 codes", "value": 4 }, { "name": "ICD9 codes", "value": 17 } ], "event_date_range": "01/01/1998 - 10/01/2012", "concept_information": [ { "concept_id": 1850, "concept_version_id": 4838, "concept_name": "Respiratory Tract Infection - Primary Care", "coding_system": { "id": 17, "name": "ICD9 codes", "description": "ICD9 codes" }, "phenotype_id": "PH487", "phenotype_version_id": 974, "phenotype_name": "Respiratory Tract Infection", "code_attribute_header": [ "Entity type", "Coding System (ICD-10 ICD-9)", "Category" ], "codes": [ { "code": "100", "description": "PRIMARY TB COMPLEX UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "100.1", "description": "PRIMARY TB COMPLEX W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "100.2", "description": "PRIMARY TB COMPLEX EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "100.3", "description": "PRIMARY TB COMPLEX MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "100.4", "description": "PRIMARY TB COMPLEX CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "100.5", "description": "PRIMARY TB COMPLEX HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "100.6", "description": "PRIMARY TB COMPLEX OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "101", "description": "TB PLEURISY PRIMARY UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "101.1", "description": "TB PLEURISY PRIMARY W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "101.2", "description": "TB PLEURISY PRIMARY EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "101.3", "description": "TB PLEURISY PRIMARY MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "101.4", "description": "TB PLEURISY PRIMARY CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "101.5", "description": "TB PLEURISY PRIMARY HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "101.6", "description": "TB PLEURISY PRIMARY OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "108", "description": "OTH PRIMARY PROG TB UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "108.1", "description": "OTH PRIMARY PROG TB W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "108.2", "description": "OTH PRIMARY PROG TB EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "108.3", "description": "OTH PRIMARY PROG TB MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "108.4", "description": "OTH PRIMARY PROG TB CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "108.5", "description": "OTH PRIMARY PROG TB HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "108.6", "description": "OTH PRIMARY PROG TB OTH METHODS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "109", "description": "UNSP PRIMARY TB UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "109.1", "description": "PRIMARY TB UNSP W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "109.2", "description": "PRIMARY TB UNSP EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "109.3", "description": "PRIMARY TB UNSP MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "109.4", "description": "PRIMARY TB UNSP CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "109.5", "description": "PRIMARY TB UNSP HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "109.6", "description": "PRIMARY TB UNSP OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "110", "description": "TB LUNG INFILTRATIVE UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "110.1", "description": "TB LUNG INFILTRATIVE W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "110.2", "description": "TB LUNG INFILTRATIVE EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "110.3", "description": "TB LUNG INFILTRATIVE MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "110.4", "description": "TB LUNG INFILTRATIVE CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "110.5", "description": "TB LUNG INFILTRATIVE HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "110.6", "description": "TB LUNG INFILTRATIVE OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "111", "description": "TB LUNG NODULAR UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "112", "description": "TB LUNG W/CAVITY UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "112.1", "description": "TB LUNG W/CAVITY W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "112.2", "description": "TB LUNG W/CAVITY EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "112.3", "description": "TB LUNG W/CAVITY MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "112.4", "description": "TB LUNG W/CAVITY CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "112.5", "description": "TB LUNG W/CAVITY HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "112.6", "description": "TB LUNG W/CAVITY OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "113", "description": "TB BRONCHUS UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "113.1", "description": "TB BRONCHUS W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "113.2", "description": "TB BRONCHUS EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "113.3", "description": "TB BRONCHUS MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "113.4", "description": "TB BRONCHUS CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "113.5", "description": "TB BRONCHUS HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "113.6", "description": "TB BRONCHUS OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "114", "description": "TB LUNG FIBROSIS UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "114.1", "description": "TB LUNG FIBROSIS W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "114.2", "description": "TB LUNG FIBROSIS EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "114.3", "description": "TB LUNG FIBROSIS MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "114.4", "description": "TB LUNG FIBROSIS CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "114.5", "description": "TB LUNG FIBROSIS HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "114.6", "description": "TB LUNG FIBROSIS OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "115", "description": "TB BRONCHIECTASIS UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "115.1", "description": "TB BRONCHIECTASIS W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "115.2", "description": "TB BRONCHIECTASIS EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "115.3", "description": "TB BRONCHIECTASIS MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "115.4", "description": "TB BRONCHIECTASIS CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "115.5", "description": "TB BRONCHIECTASIS HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "115.6", "description": "TB BRONCHIECTASIS OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "115.9", "description": "HISTOPLASMOSIS PNEUMONIA UNSPECIFIED", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "116", "description": "TB PNEUMONIA UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "116.1", "description": "TB PNEUMONIA W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "116.2", "description": "TB PNEUMONIA EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "116.3", "description": "TB PNEUMONIA MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "116.4", "description": "TB PNEUMONIA CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "116.5", "description": "TB PNEUMONIA HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "116.6", "description": "TB PNEUMONIA OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "117", "description": "TB PNEUMOTHORAX UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "117.1", "description": "TB PNEUMOTHORAX W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "117.2", "description": "TB PNEUMOTHORAX EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "117.3", "description": "TB PNEUMOTHORAX MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "117.4", "description": "TB PNEUMOTHORAX CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "117.5", "description": "TB PNEUMOTHORAX HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "117.6", "description": "TB PNEUMOTHORAX OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "118", "description": "OTH PULMONARY TB UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "118.1", "description": "OTH PULMONARY TB W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "118.2", "description": "OTH PULMONARY TB EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "118.3", "description": "OTH PULMONARY TB MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "118.4", "description": "OTH PULMONARY TB CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "118.5", "description": "OTH PULMONARY TB HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "118.6", "description": "OTH PULMONARY TB OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "119", "description": "UNSP PULMONARY TB UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "119.1", "description": "UNSP PULMONARY TB W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "119.2", "description": "UNSP PULMONARY TB RESULT UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "119.3", "description": "UNSP PULMONARY TB MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "119.4", "description": "UNSP PULMONARY TB CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "119.5", "description": "UNSP PULMONARY TB HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "119.6", "description": "UNSP PULMONARY TB OTH METHOD", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "120", "description": "TB PLEURISY UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "120.1", "description": "TB PLEURISY W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "120.2", "description": "TB PLEURISY EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "120.3", "description": "TB PLEURISY MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "120.4", "description": "TB PLEURISY CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "120.5", "description": "TB PLEURISY HISTOLOGY DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "120.6", "description": "TB PLEURISY OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "121", "description": "TB THORACIC NODES UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "121.1", "description": "TB THORACIC NODE W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "121.2", "description": "TB THORACIC NODE EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "121.3", "description": "TB THORACIC NODE MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "121.4", "description": "TB THORACIC NODE CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "121.5", "description": "TB THORACIC NODE HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "121.6", "description": "TB THORACIC NODE OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "122", "description": "ISOLATED TRACHEAL TB UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "122.1", "description": "ISOLATED TRACHEAL TB W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "122.2", "description": "ISOLATED TRACH TB EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "122.3", "description": "ISOLATED TRACHEAL TB MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "122.4", "description": "ISOLATED TRACHEAL TB CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "122.5", "description": "ISOLATED TRACHEAL TB HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "122.6", "description": "ISOLATED TRACHEAL TB OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "123", "description": "TB LARYNGITIS UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "123.1", "description": "TB LARYNGITIS W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "123.2", "description": "TB LARYNGITIS EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "123.3", "description": "TB LARYNGITIS MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "123.4", "description": "TB LARYNGITIS CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "123.5", "description": "TB LARYNGITIS HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "123.6", "description": "TB LARYNGITIS OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "128", "description": "OTH RESPIRATORY TB UNSP", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "128.1", "description": "OTH RESPIRATORY TB W/O EXAM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "128.2", "description": "OTH RESPIRATORY TB EXAM UNKNOWN", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "128.3", "description": "OTH RESPIRATORY TB MICRO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "128.4", "description": "OTH RESPIRATORY TB CULT DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "128.5", "description": "OTH RESPIRATORY TB HISTO DX", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "128.6", "description": "OTH RESPIRATORY TB OTH", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "182.8", "description": "PNEUMONIA DUE TO OTHER SPECIFIED BACTERIA", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "466", "description": "ACUTE BRONCHITIS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "466.1", "description": "ACUTE BRONCHIOLITIS DUE TO RESPIRATORY SYNCYTIAL VIRUS (RSV)", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "480", "description": "PNEUMONIA DUE TO ADENOVIRUS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "480.1", "description": "PNEUMONIA DUE TO RESPIRATORY SYNCYTIAL VIRUS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "480.2", "description": "PNEUMONIA DUE TO PARAINFLUENZA VIRUS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "480.3", "description": "PNEUMONIA DUE TO SARS-ASSOCIATED CORONAVIRUS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "480.8", "description": "PNEUMONIA DUE TO OTHER VIRUS NOT ELSEWHERE CLASSIFIED", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "480.9", "description": "VIRAL PNEUMONIA UNSPECIFIED", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "481", "description": "PNEUMOCOCCAL PNEUMONIA [STREPTOCOCCUS PNEUMONIAE PNEUMONIA]", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "482", "description": "PNEUMONIA DUE TO KLEBSIELLA PNEUMONIAE", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "482.1", "description": "PNEUMONIA DUE TO PSEUDOMONAS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "482.2", "description": "PNEUMONIA DUE TO HEMOPHILUS INFLUENZAE [H. INFLUENZAE]", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "482.3", "description": "PNEUMONIA DUE TO STREPTOCOCCUS GROUP B", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "482.4", "description": "PNEUMONIA DUE TO STAPHYLOCOCCUS UNSPECIFIED", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "482.8", "description": "PNEUMONIA DUE TO ESCHERICHIA COLI [E.COLI]", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "482.9", "description": "BACTERIAL PNEUMONIA UNSPECIFIED", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "483", "description": "PNEUMONIA DUE TO MYCOPLASMA PNEUMONIAE", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "483.1", "description": "PNEUMONIA DUE TO CHLAMYDIA", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "483.2", "description": "CHRONIC OBSTRUCTIVE ASTHMA WITH STATUS ASTHMATICUS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "483.8", "description": "PNEUMONIA DUE TO OTHER SPECIFIED ORGANISM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "484.7", "description": "PNEUMONIA IN OTHER SYSTEMIC MYCOSES", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "484.8", "description": "PNEUMONIA IN OTHER INFECTIOUS DISEASES CLASSIFIED ELSEWHERE", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "485", "description": "BRONCHOPNEUMONIA ORGANISM UNSPECIFIED", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "486", "description": "PNEUMONIA ORGANISM UNSPECIFIED", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "487", "description": "INFLUENZA WITH PNEUMONIA", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "490", "description": "BRONCHITIS NOT SPECIFIED AS ACUTE OR CHRONIC", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "491.2", "description": "OBSTRUCTIVE CHRONIC BRONCHITIS, WITH ACUTE BRONCHITIS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "493.2", "description": "CHRONIC OBSTRUCTIVE ASTHMA WITH (ACUTE) EXACERBATION", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "496", "description": "CHRONIC AIRWAY OBSTRUCTION NOT ELSEWHERE CLASSIFIED", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "510", "description": "EMPYEMA WITH FISTULA", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "510.9", "description": "EMPYEMA WITHOUT FISTULA", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "511", "description": "PLEURISY WITHOUT EFFUSION OR CURRENT TUBERCULOSIS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "513", "description": "ABSCESS OF LUNG", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "513.1", "description": "ABSCESS OF MEDIASTINUM", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "514", "description": "PULMONARY CONGESTION AND HYPOSTASIS", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "517", "description": "RHEUMATIC PNEUMONIA", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "530.8", "description": "TRACHEOESOPHAGEAL FISTULA", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } }, { "code": "730", "description": "ORNITHOSIS WITH PNEUMONIA", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-9", "Category": "diagnostic" } } ] }, { "concept_id": 1851, "concept_version_id": 4840, "concept_name": "Respiratory Tract Infection - Primary Care", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH487", "phenotype_version_id": 974, "phenotype_name": "Respiratory Tract Infection", "code_attribute_header": [ "Entity type", "Coding System (ICD-10 ICD-9)", "Category" ], "codes": [ { "code": "A15", "description": "Respiratory tuberculosis, bacteriologically and histologically confirmed", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A15.0", "description": "Tuberculosis of lung, confirmed by sputum microscopy with or without culture", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A15.1", "description": "Tuberculosis of lung, confirmed by culture only", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A15.2", "description": "Tuberculosis of lung, confirmed histologically", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A15.3", "description": "Tuberculosis of lung, confirmed by unspecified means", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A15.4", "description": "Tuberculosis of intrathoracic lymph nodes, confirmed bacteriologically and histologically", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A15.5", "description": "Tuberculosis of larynx, trachea and bronchus, confirmed bacteriologically and histologically", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A15.6", "description": "Tuberculous pleurisy, confirmed bacteriologically and histologically", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A15.7", "description": "Primary respiratory tuberculosis, confirmed bacteriologically and histologically", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A15.8", "description": "Other respiratory tuberculosis, confirmed bacteriologically and histologically", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A15.9", "description": "Respiratory tuberculosis unspecified, confirmed bacteriologically and histologically", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A16", "description": "Respiratory tuberculosis, not confirmed bacteriologically or histologically", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A16.0", "description": "Tuberculosis of lung, bacteriologically and histologically negative", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A16.1", "description": "Tuberculosis of lung, bacteriological and histological examination not done", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A16.2", "description": "Tuberculosis of lung, without mention of bacteriological or histological confirmation", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A16.3", "description": "Tuberculosis of intrathoracic lymph nodes, without mention of bacteriological or histological confir", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A16.4", "description": "Tuberculosis of larynx, trachea and bronchus, without mention of bacteriological or histological con", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A16.5", "description": "Tuberculous pleurisy, without mention of bacteriological or histological confirmation", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A16.7", "description": "Primary respiratory tuberculosis without mention of bacteriological or histological confirmation", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A16.8", "description": "Other respiratory tuberculosis, without mention of bacteriological or histological confirmation", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A16.9", "description": "Respiratory tuberculosis unspecified, without mention of bacteriological or histological confirmatio", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "A48.1", "description": "Legionnaires disease", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J12", "description": "Viral pneumonia, not elsewhere classified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J12.0", "description": "Adenoviral pneumonia", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J12.1", "description": "Respiratory syncytial virus pneumonia", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J12.2", "description": "Parainfluenza virus pneumonia", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J12.3", "description": "Human metapneumovirus pneumonia", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J12.8", "description": "Other viral pneumonia", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J12.9", "description": "Viral pneumonia, unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J13", "description": "Pneumonia due to Streptococcus pneumoniae", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J14", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15", "description": "Bacterial pneumonia, not elsewhere classified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15.0", "description": "Pneumonia due to Klebsiella pneumoniae", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15.1", "description": "Pneumonia due to Pseudomonas", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15.2", "description": "Pneumonia due to staphylococcus", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15.3", "description": "Pneumonia due to streptococcus, group B", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15.4", "description": "Pneumonia due to other streptococci", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15.5", "description": "Pneumonia due to Escherichia coli", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15.6", "description": "Pneumonia due to other aerobic Gram-negative bacteria", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15.7", "description": "Pneumonia due to Mycoplasma pneumoniae", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15.8", "description": "Other bacterial pneumonia", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J15.9", "description": "Bacterial pneumonia, unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J16", "description": "Pneumonia due to other infectious organisms, not elsewhere classified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J16.0", "description": "Chlamydial pneumonia", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J16.8", "description": "Pneumonia due to other specified infectious organisms", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J17", "description": "Pneumonia in diseases classified elsewhere", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J17.0", "description": "Pneumonia in bacterial diseases classified elsewhere", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J17.1", "description": "Pneumonia in viral diseases classified elsewhere", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J17.2", "description": "Pneumonia in mycoses", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J17.3", "description": "Pneumonia in parasitic diseases", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J17.8", "description": "Pneumonia in other diseases classified elsewhere", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J18", "description": "Pneumonia, organism unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J18.0", "description": "Bronchopneumonia, unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J18.1", "description": "Lobar pneumonia, unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J18.2", "description": "Hypostatic pneumonia, unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J18.8", "description": "Other pneumonia, organism unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J18.9", "description": "Pneumonia, unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20", "description": "Acute bronchitis", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20.0", "description": "Acute bronchitis due to Mycoplasma pneumoniae", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20.1", "description": "Acute bronchitis due to Haemophilus influenzae", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20.2", "description": "Acute bronchitis due to streptococcus", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20.3", "description": "Acute bronchitis due to coxsackievirus", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20.4", "description": "Acute bronchitis due to parainfluenza virus", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20.5", "description": "Acute bronchitis due to respiratory syncytial virus", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20.6", "description": "Acute bronchitis due to rhinovirus", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20.7", "description": "Acute bronchitis due to echovirus", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20.8", "description": "Acute bronchitis due to other specified organisms", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J20.9", "description": "Acute bronchitis, unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J21", "description": "Acute bronchiolitis", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J21.0", "description": "Acute bronchiolitis due to respiratory syncytial virus", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J21.1", "description": "Acute bronchiolitis due to human metapneumovirus", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J21.8", "description": "Acute bronchiolitis due to other specified organisms", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J21.9", "description": "Acute bronchiolitis, unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J22", "description": "Unspecified acute lower respiratory infection", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J40", "description": "Bronchitis, not specified as acute or chronic", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J44.0", "description": "Chronic obstructive pulmonary disease with acute lower respiratory infection", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J44.1", "description": "Chronic obstructive pulmonary disease with acute exacerbation, unspecified", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J85", "description": "Abscess of lung and mediastinum", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J85.0", "description": "Gangrene and necrosis of lung", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J85.1", "description": "Abscess of lung with pneumonia", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J85.2", "description": "Abscess of lung without pneumonia", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J85.3", "description": "Abscess of mediastinum", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J86", "description": "Pyothorax", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J86.0", "description": "Pyothorax with fistula", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } }, { "code": "J86.9", "description": "Pyothorax without fistula", "attributes": { "Entity type": "res42: respiratory tract infection", "Coding System (ICD-10 ICD-9)": "ICD-10", "Category": "diagnostic" } } ] } ], "status": 2, "doi": "https://doi.org/10.48533/4bxw-jj22", "is_deleted": null, "publish_status": 2, "owner": "ieuan.scanlon", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 974, "version_name": "Respiratory Tract Infection", "version_date": "2021-10-06T16:21:45.619623Z", "is_published": true, "is_latest": true } ] } ]