[
  {
    "phenotype_id": "PH596",
    "phenotype_version_id": 1192,
    "name": "Inflammatory Bowel Disease",
    "definition": "The original algorithm consisted of two criteria. Individuals meeting at least one were considered to have RA. Criterion 1: ≥1 RA Read code and a disease modifying antirheumatic drug (DMARD) without an alternative indication. Criterion 2: ≥2 RA Read codes, with at least one ‘strong’ code and no alternative diagnoses. Lists of codes for consultations and prescriptions were obtained from the authors of the original algorithm where these were available, or compiled based on the original description and clinical knowledge. 4161 people with a first Read code for RA between 1 January 2010 and 31 December 2012 were selected from the Clinical Practice Research Datalink (CPRD, successor to the GPRD), and the criteria applied.\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": null,
        "details": "Sara Muller, Samantha L Hider,Karim Raza, Rebecca J Stack, Richard A Hayward, Christian D Mallen, An algorithm to identify rheumatoid arthritis in primary care a Clinical Practice Research Datalink study. BMJ Open, 5(e009309), 2015."
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:26:20.625824Z",
    "author": "Sara Muller, Samantha L Hider, Karim Raza, Rebecca J Stack, Richard A Hayward, Christian D Mallen",
    "collections": [
      {
        "name": "ClinicalCodes Repository",
        "value": 25
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:26:20.625854Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      }
    ],
    "coding_system": [
      {
        "name": "Read codes v2",
        "value": 5
      }
    ],
    "event_date_range": "01/01/2010 - 31/12/2012",
    "concept_information": [
      {
        "concept_id": 2001,
        "concept_version_id": 5140,
        "concept_name": "Inflammatory Bowel Disease - Primary Care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH596",
        "phenotype_version_id": 1192,
        "phenotype_name": "Inflammatory Bowel Disease",
        "code_attribute_header": [
          "Entity type",
          "Category",
          "Coding System (Read)"
        ],
        "codes": [
          {
            "code": "J40..00",
            "description": "Regional enteritis - Crohn's disease",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J400.00",
            "description": "Regional enteritis of the small bowel",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J400200",
            "description": "Crohn's disease of the terminal ileum",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J400300",
            "description": "Crohn's disease of the ileum unspecified",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J400400",
            "description": "Crohn's disease of the ileum NOS",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J400500",
            "description": "Exacerbation of Crohn's disease of small intestine",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J400z00",
            "description": "Crohn's disease of the small bowel NOS",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J40..11",
            "description": "Crohn's disease",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J401200",
            "description": "Exacerbation of Crohn's disease of large intestine",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J401z00",
            "description": "Crohn's disease of the large bowel NOS",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J402.00",
            "description": "Regional ileocolitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J40z.11",
            "description": "Crohn's disease NOS",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J410.00",
            "description": "Ulcerative proctocolitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J410000",
            "description": "Ulcerative ileocolitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J410100",
            "description": "Ulcerative colitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J410200",
            "description": "Ulcerative rectosigmoiditis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J410z00",
            "description": "Ulcerative proctocolitis NOS",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J4...11",
            "description": "Colitis - noninfective",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J411.00",
            "description": "Ulcerative (chronic) enterocolitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J41..11",
            "description": "Mucous colitis and/or proctitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J41..12",
            "description": "Ulcerative colitis and/or proctitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J4...12",
            "description": "Inflammatory bowel disease",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J412.00",
            "description": "Ulcerative (chronic) ileocolitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J413.00",
            "description": "Ulcerative pancolitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J41y.00",
            "description": "Other idiopathic proctocolitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J41yz00",
            "description": "Other idiopathic proctocolitis NOS",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J41z.00",
            "description": "Idiopathic proctocolitis NOS",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J43..00",
            "description": "Other non-infective inflammatory gastroenteritis and colitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J431200",
            "description": "Toxic enterocolitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J431300",
            "description": "Toxic colitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J435.00",
            "description": "Pouchitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J437.00",
            "description": "Colitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J438.00",
            "description": "Left sided colitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J4z2.00",
            "description": "Non-infective ileitis NOS",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J4z3.00",
            "description": "Non-infective colitis NOS",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J4z5.00",
            "description": "Exacerbation of non-infective colitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          },
          {
            "code": "J4z6.00",
            "description": "Indeterminate colitis",
            "attributes": {
              "Entity type": "res34: inflammatory_bowel_disease",
              "Category": "diagnostic",
              "Coding System (Read)": "Read"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/8evh-kn09",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 1192,
        "version_name": "Inflammatory Bowel Disease",
        "version_date": "2021-10-06T16:26:20.649834Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]