[ { "phenotype_id": "PH610", "phenotype_version_id": 1220, "name": "Unnamed Inflammatory Arthritis", "definition": "Methods: \n\nWe examined EHRs of 5,843 patients in the General Practice Research Database, aged $30y, with a first coded diagnosis of RA between 2005 and 2008. Lists of indicator markers for RA were developed initially by panels of clinicians drawing up code-lists and then modified based on scrutiny of available data. The prevalence of indicator markers, and their temporal relationship to RA codes, was examined in patients from 3y before to 14d after recorded RA diagnosis.\n\n\nFindings: \n\nIndicator markers were common throughout EHRs of RA patients, with 83.5% having 2 or more markers. 34% of patients received a disease-specific prescription before RA was coded; 42% had a referral to rheumatology, and 63% had a test for rheumatoid factor. 65% had at least one joint symptom or sign recorded and in 44% this was at least 6-months before recorded RA diagnosis.\n\n\n\n\n\n\n\n\n", "implementation": "", "publications": [ { "doi": null, "details": "Amanda Nicholson, Elizabeth Ford, Kevin A Davies, Helen E Smith, Greta Rait, A Rosemary Tate, Irene Petersen, Jackie Cassell, Optimising Use of Electronic Health Records to Describe the Presentation of Rheumatoid Arthritis in Primary Care A Strategy for Developing Code Lists. PLoS ONE, 8:2, 2013." } ], "validation": "", "citation_requirements": "", "created": "2021-10-06T16:26:42.968703Z", "author": "Amanda Nicholson, Elizabeth Ford, Kevin A Davies, Helen E Smith, Greta Rait, A Rosemary Tate, Irene Petersen, Jackie Cassell", "collections": [ { "name": "ClinicalCodes Repository", "value": 25 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 1, "updated": "2021-10-06T16:26:42.968732Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "", "data_sources": [ { "name": "CPRD GOLD", "value": 5, "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f", "url": "https://healthdatagateway.org/en/dataset/694", "datasource_id": 694 } ], "coding_system": [ { "name": "Read codes v2", "value": 5 }, { "name": "OXMIS codes", "value": 15 } ], "event_date_range": "01/01/2005 - 31/12/2008", "concept_information": [ { "concept_id": 2015, "concept_version_id": 5168, "concept_name": "Unnamed Inflammatory Arthritis - Primary Care", "coding_system": { "id": 5, "name": "Read codes v2", "description": "Read codes v2" }, "phenotype_id": "PH610", "phenotype_version_id": 1220, "phenotype_name": "Unnamed Inflammatory Arthritis", "code_attribute_header": [ "Entity type", "Coding System (OXMIS Read)", "Category" ], "codes": [ { "code": "N04..11", "description": "Inflammatory polyarthropathy", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N045.00", "description": "Other juvenile arthritis", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N045100", "description": "Juvenile seronegative polyarthritis", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N04y.00", "description": "Other specified inflammatory polyarthropathy", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N04y100", "description": "Sero negative arthritis", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N04y111", "description": "Sero negative polyarthritis", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N04yz00", "description": "Other specified inflammatory polyarthropathy NOS", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N04z.00", "description": "Inflammatory polyarthropathy NOS", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N060.11", "description": "Endemic polyarthritis", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N062900", "description": "Allergic arthritis of multiple sites", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N064900", "description": "Transient arthropathy of multiple sites", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N065.00", "description": "Unspecified polyarthropathy or polyarthritis", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N065.11", "description": "Polyarthropathy NEC", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N065900", "description": "Unspecified polyarthropathy of multiple sites", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N065z00", "description": "Unspecified polyarthropathy or polyarthritis NOS", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N065z11", "description": "Polyarthritis", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N06z900", "description": "Arthropathy NOS; of multiple sites", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N090900", "description": "Effusion of multiple joints", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093.00", "description": "Palindromic rheumatism", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093000", "description": "Palindromic rheumatism of unspecified site", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093100", "description": "Palindromic rheumatism of the shoulder region", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093.11", "description": "Hench - Rosenberg syndrome", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093200", "description": "Palindromic rheumatism of the upper arm", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093300", "description": "Palindromic rheumatism of the forearm", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093400", "description": "Palindromic rheumatism of the hand", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093500", "description": "Palindromic rheumatism of the pelvic region and thigh", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093600", "description": "Palindromic rheumatism of the lower leg", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093700", "description": "Palindromic rheumatism of the ankle and foot", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093800", "description": "Palindromic rheumatism of other specified site", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093900", "description": "Palindromic rheumatism of multiple sites", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N093z00", "description": "Palindromic rheumatism NOS", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N094900", "description": "Arthralgia of multiple joints", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "N095900", "description": "Multiple stiff joints", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "Nyu1.00", "description": "[X]Inflammatory polyarthropathies", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } }, { "code": "Nyu1500", "description": "[X]Other juvenile arthritis", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "Read", "Category": "diagnostic" } } ] }, { "concept_id": 2016, "concept_version_id": 5170, "concept_name": "Unnamed Inflammatory Arthritis - Primary Care", "coding_system": { "id": 15, "name": "OXMIS codes", "description": "OXMIS codes" }, "phenotype_id": "PH610", "phenotype_version_id": 1220, "phenotype_name": "Unnamed Inflammatory Arthritis", "code_attribute_header": [ "Entity type", "Coding System (OXMIS Read)", "Category" ], "codes": [ { "code": "7122A", "description": "RHEUMATISM PALINDROMIC", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "OXMIS", "Category": "diagnostic" } }, { "code": "7150SN", "description": "ARTHRITIS SERO NEGATIVE", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "OXMIS", "Category": "diagnostic" } }, { "code": "715 B", "description": "POLYARTHRITIS", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "OXMIS", "Category": "diagnostic" } }, { "code": "7873DM", "description": "POLYARTHRALGIA", "attributes": { "Entity type": "res13: Unnamed Inflammatory Arthritis", "Coding System (OXMIS Read)": "OXMIS", "Category": "diagnostic" } } ] } ], "status": 2, "doi": "https://doi.org/10.48533/byw0-sm34", "is_deleted": null, "publish_status": 2, "owner": "ieuan.scanlon", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 1220, "version_name": "Unnamed Inflammatory Arthritis", "version_date": "2021-10-06T16:26:42.994726Z", "is_published": true, "is_latest": true } ] } ]