[
  {
    "phenotype_id": "PH627",
    "phenotype_version_id": 1254,
    "name": "Chronic Obstructive Pulmonary Disease (COPD)",
    "definition": "Objectives: \n\nLittle is known about the prevalence of comorbidity rates in people with severe mental illness (SMI) in UK primary care. We calculated the prevalence of SMI by UK country, English region and deprivation quintile, antipsychotic and antidepressant medication prescription rates for people with SMI, and prevalence rates of common comorbidities in people with SMI compared with people without SMI.\n\n\nDesign: \n\nRetrospective cohort study from 2000 to 2012.\n\n\nSetting: \n\n627 general practices contributing to the Clinical Practice Research Datalink, a UK primary care database.\n\n\nParticipants: \n\nEach identified case (346 551) was matched for age, sex and general practice with 5 randomly selected control cases (1 732 755) with no diagnosis of SMI in each yearly time point.\n\n\nOutcome measures: \n\nPrevalence rates were calculated for 16 conditions.\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": null,
        "details": "Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis, Inequalities in physical comorbidity a longitudinal comparative cohort study of people with severe mental illness in the UK. BMJ Open, 5(e009010), 2015."
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:27:35.093655Z",
    "author": "Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis",
    "collections": [
      {
        "name": "ClinicalCodes Repository",
        "value": 25
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:27:35.093684Z",
    "sex": [
      {
        "name": "Male",
        "value": "1"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      }
    ],
    "coding_system": [
      {
        "name": "Read codes v2",
        "value": 5
      },
      {
        "name": "OXMIS codes",
        "value": 15
      }
    ],
    "event_date_range": "01/04/2000 - 31/03/2012",
    "concept_information": [
      {
        "concept_id": 2036,
        "concept_version_id": 5210,
        "concept_name": "Chronic Obstructive Pulmonary Disease (COPD) - Primary Care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH627",
        "phenotype_version_id": 1254,
        "phenotype_name": "Chronic Obstructive Pulmonary Disease (COPD)",
        "code_attribute_header": [
          "Entity type",
          "Coding System (OXMIS Read)",
          "Category"
        ],
        "codes": [
          {
            "code": "H3...00",
            "description": "Chronic obstructive pulmonary disease",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H31..00",
            "description": "Chronic bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H310.00",
            "description": "Simple chronic bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H310000",
            "description": "Chronic catarrhal bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H310z00",
            "description": "Simple chronic bronchitis NOS",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H311.00",
            "description": "Mucopurulent chronic bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H311000",
            "description": "Purulent chronic bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H311100",
            "description": "Fetid chronic bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H311z00",
            "description": "Mucopurulent chronic bronchitis NOS",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H312.00",
            "description": "Obstructive chronic bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H312000",
            "description": "Chronic asthmatic bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H312011",
            "description": "Chronic wheezy bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H312100",
            "description": "Emphysematous bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H312300",
            "description": "Bronchiolitis obliterans",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H312z00",
            "description": "Obstructive chronic bronchitis NOS",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H313.00",
            "description": "Mixed simple and mucopurulent chronic bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H31y.00",
            "description": "Other chronic bronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H31y100",
            "description": "Chronic tracheobronchitis",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H31yz00",
            "description": "Other chronic bronchitis NOS",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H31z.00",
            "description": "Chronic bronchitis NOS",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H32..00",
            "description": "Emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H320.00",
            "description": "Chronic bullous emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H320000",
            "description": "Segmental bullous emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H320100",
            "description": "Zonal bullous emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H320200",
            "description": "Giant bullous emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H320300",
            "description": "Bullous emphysema with collapse",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H320z00",
            "description": "Chronic bullous emphysema NOS",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H321.00",
            "description": "Panlobular emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H322.00",
            "description": "Centrilobular emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H32y.00",
            "description": "Other emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H32y000",
            "description": "Acute vesicular emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H32y100",
            "description": "Atrophic (senile) emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H32y111",
            "description": "Acute interstitial emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H32y200",
            "description": "MacLeod's unilateral emphysema",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H32yz00",
            "description": "Other emphysema NOS",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H32z.00",
            "description": "Emphysema NOS",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H36..00",
            "description": "Mild chronic obstructive pulmonary disease",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H37..00",
            "description": "Moderate chronic obstructive pulmonary disease",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H38..00",
            "description": "Severe chronic obstructive pulmonary disease",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H3y..11",
            "description": "Other specified chronic obstructive pulmonary disease",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "H3z..11",
            "description": "Chronic obstructive pulmonary disease NOS",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          }
        ]
      },
      {
        "concept_id": 2037,
        "concept_version_id": 5212,
        "concept_name": "Chronic Obstructive Pulmonary Disease (COPD) - Primary Care",
        "coding_system": {
          "id": 15,
          "name": "OXMIS codes",
          "description": "OXMIS codes"
        },
        "phenotype_id": "PH627",
        "phenotype_version_id": 1254,
        "phenotype_name": "Chronic Obstructive Pulmonary Disease (COPD)",
        "code_attribute_header": [
          "Entity type",
          "Coding System (OXMIS Read)",
          "Category"
        ],
        "codes": [
          {
            "code": "491",
            "description": "CHRONIC BRONCHITIS",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "491 E",
            "description": "CHRONIC BRONCHITIS WITH EMPHYSEMA",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "492",
            "description": "EMPHYSEMA PULMONARY",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "492 AC",
            "description": "EMPHYSEMA APICAL BULLAE",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "5199G",
            "description": "OBSTRUCTIVE AIRWAYS DISEASE CHRONIC",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "5199GL",
            "description": "COLD (CHRONIC OBSTRUCTIVE LUNG DISEASE)",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "5199GP",
            "description": "COPD (CHRONIC OBSTRUCTIVE PULMONARY DISE",
            "attributes": {
              "Entity type": "res26: COPD",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/6v6v-5259",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 1254,
        "version_name": "Chronic Obstructive Pulmonary Disease (COPD)",
        "version_date": "2021-10-06T16:27:35.122106Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]