[
  {
    "phenotype_id": "PH630",
    "phenotype_version_id": 1260,
    "name": "Epilepsy",
    "definition": "Objectives: \n\nLittle is known about the prevalence of comorbidity rates in people with severe mental illness (SMI) in UK primary care. We calculated the prevalence of SMI by UK country, English region and deprivation quintile, antipsychotic and antidepressant medication prescription rates for people with SMI, and prevalence rates of common comorbidities in people with SMI compared with people without SMI.\n\n\nDesign: \n\nRetrospective cohort study from 2000 to 2012.\n\n\nSetting: \n\n627 general practices contributing to the Clinical Practice Research Datalink, a UK primary care database.\n\n\nParticipants: \n\nEach identified case (346 551) was matched for age, sex and general practice with 5 randomly selected control cases (1 732 755) with no diagnosis of SMI in each yearly time point.\n\n\nOutcome measures: \n\nPrevalence rates were calculated for 16 conditions.\n\n\n\n\n\n\n\n\n",
    "implementation": "",
    "publications": [
      {
        "doi": null,
        "details": "Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis, Inequalities in physical comorbidity a longitudinal comparative cohort study of people with severe mental illness in the UK. BMJ Open, 5(e009010), 2015."
      }
    ],
    "validation": "",
    "citation_requirements": "",
    "created": "2021-10-06T16:27:42.712559Z",
    "author": "Siobhan Reilly, Ivan Olier, Claire Planner, Tim Doran, David Reeves, Darren M Ashcroft, Linda Gask, Evangelos Kontopantelis",
    "collections": [
      {
        "name": "ClinicalCodes Repository",
        "value": 25
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 1,
    "updated": "2021-10-06T16:27:42.712587Z",
    "sex": [
      {
        "name": "Male",
        "value": "1"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "",
    "data_sources": [
      {
        "name": "CPRD GOLD",
        "value": 5,
        "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f",
        "url": "https://healthdatagateway.org/en/dataset/694",
        "datasource_id": 694
      }
    ],
    "coding_system": [
      {
        "name": "Read codes v2",
        "value": 5
      },
      {
        "name": "OXMIS codes",
        "value": 15
      }
    ],
    "event_date_range": "01/04/2000 - 31/03/2012",
    "concept_information": [
      {
        "concept_id": 2042,
        "concept_version_id": 5222,
        "concept_name": "Epilepsy - Primary Care",
        "coding_system": {
          "id": 5,
          "name": "Read codes v2",
          "description": "Read codes v2"
        },
        "phenotype_id": "PH630",
        "phenotype_version_id": 1260,
        "phenotype_name": "Epilepsy",
        "code_attribute_header": [
          "Entity type",
          "Coding System (OXMIS Read)",
          "Category"
        ],
        "codes": [
          {
            "code": "667B.00",
            "description": "Nocturnal epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F132100",
            "description": "Progressive myoclonic epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25..00",
            "description": "Epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F250.00",
            "description": "Generalised nonconvulsive epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F250000",
            "description": "Petit mal (minor) epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F250011",
            "description": "Epileptic absences",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F250100",
            "description": "Pykno-epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F250200",
            "description": "Epileptic seizures - atonic",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F250300",
            "description": "Epileptic seizures - akinetic",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F250500",
            "description": "Lennox-Gastaut syndrome",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F250y00",
            "description": "Other specified generalised nonconvulsive epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F250z00",
            "description": "Generalised nonconvulsive epilepsy NOS",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F251.00",
            "description": "Generalised convulsive epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F251000",
            "description": "Grand mal (major) epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F251011",
            "description": "Tonic-clonic epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F251111",
            "description": "Otohara syndrome",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F251200",
            "description": "Epileptic seizures - clonic",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F251300",
            "description": "Epileptic seizures - myoclonic",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F251400",
            "description": "Epileptic seizures - tonic",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F251500",
            "description": "Tonic-clonic epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F251y00",
            "description": "Other specified generalised convulsive epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F251z00",
            "description": "Generalised convulsive epilepsy NOS",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F252.00",
            "description": "Petit mal status",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F253.00",
            "description": "Grand mal status",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F253.11",
            "description": "Status epilepticus",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F254.00",
            "description": "Partial epilepsy with impairment of consciousness",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F254000",
            "description": "Temporal lobe epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F254100",
            "description": "Psychomotor epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F254200",
            "description": "Psychosensory epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F254300",
            "description": "Limbic system epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F254400",
            "description": "Epileptic automatism",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F254500",
            "description": "Complex partial epileptic seizure",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F254z00",
            "description": "Partial epilepsy with impairment of consciousness NOS",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255.00",
            "description": "Partial epilepsy without impairment of consciousness",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255000",
            "description": "Jacksonian, focal or motor epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255011",
            "description": "Focal epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255012",
            "description": "Motor epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255100",
            "description": "Sensory induced epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255200",
            "description": "Somatosensory epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255300",
            "description": "Visceral reflex epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255311",
            "description": "Partial epilepsy with autonomic symptoms",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255400",
            "description": "Visual reflex epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255500",
            "description": "Unilateral epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255600",
            "description": "Simple partial epileptic seizure",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255y00",
            "description": "Partial epilepsy without impairment of consciousness OS",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F255z00",
            "description": "Partial epilepsy without impairment of consciousness NOS",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F257.00",
            "description": "Kojevnikov's epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25D.00",
            "description": "Menstrual epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25E.00",
            "description": "Stress-induced epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25F.00",
            "description": "Photosensitive epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25X.00",
            "description": "Status epilepticus, unspecified",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25y.00",
            "description": "Other forms of epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25y000",
            "description": "Cursive (running) epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25y100",
            "description": "Gelastic epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25y200",
            "description": "Locl-rlt(foc)(part)idiop epilep&epilptic syn seiz locl onset",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25y300",
            "description": "Complex partial status epilepticus",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25y400",
            "description": "Benign Rolandic epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25yz00",
            "description": "Other forms of epilepsy NOS",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "F25z.00",
            "description": "Epilepsy NOS",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          },
          {
            "code": "SC20000",
            "description": "Traumatic epilepsy",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "Read",
              "Category": "diagnostic"
            }
          }
        ]
      },
      {
        "concept_id": 2043,
        "concept_version_id": 5224,
        "concept_name": "Epilepsy - Primary Care",
        "coding_system": {
          "id": 15,
          "name": "OXMIS codes",
          "description": "OXMIS codes"
        },
        "phenotype_id": "PH630",
        "phenotype_version_id": 1260,
        "phenotype_name": "Epilepsy",
        "code_attribute_header": [
          "Entity type",
          "Coding System (OXMIS Read)",
          "Category"
        ],
        "codes": [
          {
            "code": "2932",
            "description": "PSYCHOSIS EPILEPTIC",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3032EP",
            "description": "EPILEPSY ALCOHOLIC",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "342 E",
            "description": "PARKINSONIAN EPILEPSY",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3450",
            "description": "EPILEPSY NONCONVULSIVE GENERALIZED",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3451",
            "description": "GRAND MAL EPILEPSY",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3453AT",
            "description": "EPILEPSY AUTOMATISM",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3453P",
            "description": "EPILEPSY PERIPHERAL",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3453T",
            "description": "TEMPORAL LOBE EPILEPSY",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3459A",
            "description": "POST-TRAUMATIC EPILEPSY",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3459AB",
            "description": "ABDOMEN CONVULSIVE EQUIVALENT (EPILEPSY)",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3459BA",
            "description": "IDOPATHIC EPILEPSY",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3459D",
            "description": "ISCHAEMIC EPILEPSY",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          },
          {
            "code": "3459N",
            "description": "NOCTURNAL EPILEPSY",
            "attributes": {
              "Entity type": "res26: Epilepsy",
              "Coding System (OXMIS Read)": "OXMIS",
              "Category": "diagnostic"
            }
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/766a-xs48",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "ieuan.scanlon",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 1260,
        "version_name": "Epilepsy",
        "version_date": "2021-10-06T16:27:42.739042Z",
        "is_published": true,
        "is_latest": true
      }
    ]
  }
]