[ { "phenotype_id": "PH801", "phenotype_version_id": 2225, "name": "Influenza infection Secondary care", "definition": "\n- Not found code search\n- Wabe et al, 2021The aim of the study was to evaluate the accuracy of assigned International Classification of Diseases version 10-Australian Modification (ICD-10-AM) codes for influenza by comparing with patients’ results of their polymerase chain reaction (PCR)-based laboratory tests.Although ICD-10-AM coding for influenza demonstrated high accuracy when laboratory results were received before discharge, its sensitivity was substantially lower for patients whose test results were not available at discharge. The timely availability of laboratory test results during the episode of care could contribute to improved coding accuracy.The timely availability of laboratory test results during the episode of care could contribute to improved coding accuracy.Feemster et al, 2012We used Pediatric Health Information System data and laboratory records from 3 children's hospitals to determine whether administrative data accurately identify children with laboratory-confirmed influenza.The objective of this multicenter study was to validate influenza-specific ICD-9 codes for the identification of influenza cases among hospitalized childrenAmong 23 282 inpatients, diagnosis codes for influenza detected 73% of laboratory-confirmed influenza cases, whereas <1% of patients without a diagnosis code had laboratory-confirmed influenza.Keren et al, 2006To determine the sensitivity and positive predictive value of influenza-specific ICD-9 admission or discharge codes (487.0, 487.1, and 487.8), we conducted a retrospective cohort study of all patients <21 years of age hospitalized at the Children's Hospital of Philadelphia with laboratory-confirmed influenza during 3 consecutive influenza seasons (July 2001 through June 2004)Influenza-specific ICD-9 codes assigned in a setting of routine rapid diagnostic testing may be useful for following trends. However, these codes will substantially underestimate the actual number of influenza-related hospitalizations.", "implementation": "\n\nThese codes are not intended to be mandatory, but are to be used as a starting point for the identification of influenza infection in routine Electronic Health Record (EHR). Each study may differ in the sensitivity and specificity of the coding required. \n\n \n\nAccording to the National Health Service (NHS), Influenza is a common infectious viral illness spread by coughs and sneezes. Some of the main symptoms of influenza include: high temperature (fever) of 38C or above, tiredness and weakness, headache, general aches and pains and dry or chesty cough. Cold-like symptoms, such as a blocked or runny nose, sneezing, and a sore throat, can also be caused by influenza, but they tend to be less severe than the other symptoms. \n\nhttps://www.nhsinform.scot/illnesses-and-conditions/infections-and-poisoning/flu\n\n \n\nAccording to the National Institute for Health and Care Excellence (NICE) guidelines, Influenza is an acute respiratory illness caused by RNA viruses f the family Orthomyxoviridae (influenza viruses). There are three types of influenza virus: Influenza A occurs more frequently and is more virulent. It is responsible for local outbreaks, larger epidemics and pandemics. Influenza B often co-circulates with influenza A during the yearly outbreaks. Generally, influenza B causes less severe clinical illness, although it can still be responsible for outbreaks. Influenza C usually causes a mild or asymptomatic infection similar to the common cold.\n\nInfluenza presents with symptoms appearing around 2 days after exposure. Uncomplicated influenza signs and symptoms include: coryza, nasal discharge, cough, fever, gastrointestinal symptoms, headache, malaise, myalgia, arthralgia, ocular symptoms, and sore throat. Complicated influenza is defined by signs and symptoms that: require hospital admission, involve the lower respiratory tract, central nervous system, or cause significant exacerbation of an underlying medical condition.\n\nhttps://cks.nice.org.uk/topics/influenza-seasonal/\n\nNot found code search\n\n", "publications": [ { "doi": null, "details": "Publications in 2020-2021 identified in PubMed" }, { "doi": "10.1186/s12889-020-09553-0", "details": "Moss JWE, Davidson C, Mattock R, Gibbons I, Mealing S, Carroll S. Quantifying the direct secondary health care cost of seasonal influenza in England. BMC Public Health. 2020 Sep 29;20(1):1464. doi: 10.1186/s12889-020-09553-0. PMID: 32993588; PMCID: PMC7526100." }, { "doi": "10.1136/bmjopen-2019-036529", "details": "Ramsay J, Minton J, Fischbacher C, Fenton L, Kaye-Bardgett M, Wyper GMA, Richardson E, McCartney G. How have changes in death by cause and age group contributed to the recent stalling of life expectancy gains in Scotland? Comparative decomposition analysis of mortality data, 2000-2002 to 2015-2017. BMJ Open. 2020 Oct 7;10(10):e036529. doi: 10.1136/bmjopen-2019-036529. PMID: 33033012; PMCID: PMC7542937." }, { "doi": "10.1186/s12911-021-01531-9", "details": "Wabe N, Li L, Lindeman R, Post JJ, Dahm MR, Li J, Westbrook JI, Georgiou A. Evaluation of the accuracy of diagnostic coding for influenza compared to laboratory results: the availability of test results before hospital discharge facilitates improved coding accuracy. BMC Med Inform Decis Mak. 2021 May 22;21(1):168. doi: 10.1186/s12911-021-01531-9. PMID: 34022851; PMCID: PMC8141245." }, { "doi": "10.1093/cid/ciaa403", "details": "Fitzpatrick T, Malcolm W, McMenamin J, Reynolds A, Guttmann A, Hardelid P. Community-Based Antibiotic Prescribing Attributable to Respiratory Syncytial Virus and Other Common Respiratory Viruses in Young Children: A Population-Based Time-series Study of Scottish Children. Clin Infect Dis. 2021 Jun 15;72(12):2144-2153. doi: 10.1093/cid/ciaa403. PMID: 32270199." }, { "doi": null, "details": ">Code repositories" }, { "doi": "10.1093/jac/dku291", "details": "**ID**- 1 \n- **Repository**- Manchester Clinical Codes \n- **Description**- Trends in antibiotic prescribing in primary care for clinical syndromes subject to national recommendations to reduce antibiotic resistance, UK 1995-2011: analysis of a large database of primary care consultations \n- **Conditions**- URTI \n- **Publication**- https://doi.org/10.1093/jac/dku291 \n- **Clinical codes**- Read Version 2 " }, { "doi": "10.1016/S2589-7500(19)30012-3", "details": "**ID**- 2 \n- **Repository**- HDR UK National Phenomics Resource Project \n- **Description**- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service \n- **Conditions**- Infections of other or unspecified organs \n- **Publication**- https://doi.org/10.1016/S2589-7500(19)30012-3 \n- **Clinical codes**- ICD-10 " }, { "doi": "10.1016/S2589-7500(19)30012-3", "details": "**ID**- 3 \n- **Repository**- HDR UK National Phenomics Resource Project \n- **Description**- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service \n- **Conditions**- Lower respiratory tract infections \n- **Publication**- https://doi.org/10.1016/S2589-7500(19)30012-3 \n- **Clinical codes**- ICD-10 " }, { "doi": "10.1016/S2589-7500(19)30012-3", "details": "**ID**- 4 \n- **Repository**- HDR UK National Phenomics Resource Project \n- **Description**- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service \n- **Conditions**- Viral diseases (excl chronic hepatitis/HIV) \n- **Publication**- https://doi.org/10.1016/S2589-7500(19)30012-3 \n- **Clinical codes**- ICD-10 " }, { "doi": "10.1371/journal.pone.0075131", "details": "**ID**- 5 \n- **Repository**- HDR UK National Phenomics Resource Project \n- **Description**- Incidence of Community-Acquired Lower Respiratory Tract Infections and Pneumonia among Older Adults in the United Kingdom: A Population-Based Study \n- **Conditions**- Pneumonia \n- **Publication**- https://doi.org/10.1371/journal.pone.0075131 \n- **Clinical codes**- ICD-10 " }, { "doi": null, "details": "**ID**- 6 \n- **Repository**- OpenSAFELY \n- **Description**- Codes indicating a diagnosis of influenza or influenza-like illness \n- **Conditions**- Documented influenza illness \n- **Publication**- \n- **Clinical codes**- CTV3 (Read V3) with TPP extensions " }, { "doi": null, "details": "**ID**- 7 \n- **Repository**- OpenSAFELY \n- **Description**- Codes indicating a diagnosis of a lower respiratory tract infection excluding pneumonia \n- **Conditions**- Lower respiratory tract infection \n- **Publication**- \n- **Clinical codes**- CTV3 (Read V3) with TPP extensions " }, { "doi": null, "details": "**ID**- 8 \n- **Repository**- OpenSAFELY \n- **Description**- Pneumonia ICD-10 codes \n- **Conditions**- Pneumonia secondary care \n- **Publication**- \n- **Clinical codes**- ICD-10 " }, { "doi": "10.17037/DATA.00000847", "details": "**ID**- 9 \n- **Repository**- LSHTM Data Compass \n- **Description**- Code list: ICD-10 codes for pneumonia \n- **Conditions**- Pneumonia \n- **Publication**- https://doi.org/10.17037/DATA.00000847 \n- **Clinical codes**- ICD-10 " }, { "doi": "10.17037/DATA.00001654", "details": "**ID**- 10 \n- **Repository**- LSHTM Data Compass \n- **Description**- Clinical codelist: Read codes and terms used for pneumonia (CPRD) \n- **Conditions**- Pneumonia \n- **Publication**- https://doi.org/10.17037/DATA.00001654 \n- **Clinical codes**- Medcodes " } ], "validation": "Wabe et al, 2021The aim of the study was to evaluate the accuracy of assigned International Classification of Diseases version 10-Australian Modification (ICD-10-AM) codes for influenza by comparing with patients’ results of their polymerase chain reaction (PCR)-based laboratory tests.Although ICD-10-AM coding for influenza demonstrated high accuracy when laboratory results were received before discharge, its sensitivity was substantially lower for patients whose test results were not available at discharge. The timely availability of laboratory test results during the episode of care could contribute to improved coding accuracy.The timely availability of laboratory test results during the episode of care could contribute to improved coding accuracy.Feemster et al, 2012We used Pediatric Health Information System data and laboratory records from 3 children's hospitals to determine whether administrative data accurately identify children with laboratory-confirmed influenza.The objective of this multicenter study was to validate influenza-specific ICD-9 codes for the identification of influenza cases among hospitalized childrenAmong 23 282 inpatients, diagnosis codes for influenza detected 73% of laboratory-confirmed influenza cases, whereas <1% of patients without a diagnosis code had laboratory-confirmed influenza.Keren et al, 2006To determine the sensitivity and positive predictive value of influenza-specific ICD-9 admission or discharge codes (487.0, 487.1, and 487.8), we conducted a retrospective cohort study of all patients <21 years of age hospitalized at the Children's Hospital of Philadelphia with laboratory-confirmed influenza during 3 consecutive influenza seasons (July 2001 through June 2004)Influenza-specific ICD-9 codes assigned in a setting of routine rapid diagnostic testing may be useful for following trends. However, these codes will substantially underestimate the actual number of influenza-related hospitalizations.", "citation_requirements": "", "created": "2022-01-17T14:00:40.663950Z", "author": "Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou", "collections": [ { "name": "BREATHE", "value": 19 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 2, "updated": "2022-08-04T18:38:56.579813Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "", "data_sources": [ { "name": "Hospital Episode Statistics Admitted Patient Care", "value": 2, "uid": "6599230a-df54-4615-937c-d724d239491f", "url": "https://healthdatagateway.org/en/dataset/875", "datasource_id": 875 }, { "name": "Patient Episode Dataset for Wales (PEDW)", "value": 379, "uid": "4c33a5d2-164c-41d7-9797-dc2b008cc852", "url": "https://healthdatagateway.org/en/dataset/318", "datasource_id": 318 }, { "name": "Annual District Death Extract (ADDE)", "value": 50, "uid": "15cf4241-abad-4dcc-95b0-8cd7c02be999", "url": "https://healthdatagateway.org/en/dataset/316", "datasource_id": 316 }, { "name": "Civil Registration - Deaths", "value": 3, "uid": "b9009bc5-b7a6-4036-9d4b-a5133c0b14a3", "url": "https://healthdatagateway.org/en/dataset/877", "datasource_id": 877 } ], "coding_system": [ { "name": "ICD10 codes", "value": 4 }, { "name": "ICD9 codes", "value": 17 }, { "name": "ICD11 codes", "value": 18 } ], "event_date_range": "01/01/2001 to 31/01/2021", "concept_information": [ { "concept_id": 2500, "concept_version_id": 6400, "concept_name": "Influenza infection Secondary care - 3", "coding_system": { "id": 18, "name": "ICD11 codes", "description": "ICD11 codes" }, "phenotype_id": "PH801", "phenotype_version_id": 2225, "phenotype_name": "Influenza infection Secondary care", "code_attribute_header": [ "BREATHE recommended" ], "codes": [ { "code": "1D01.00", "description": "Meningitis due to Haemophilus influenzae", "attributes": { "BREATHE recommended": "N" } }, { "code": "1 E30", "description": "Influenza due to identified seasonal influenza virus", "attributes": { "BREATHE recommended": "Y" } }, { "code": "1E30&XN5SG", "description": "Influenza due to identified seasonal influenza virus / Influenza virus", "attributes": { "BREATHE recommended": "Y" } }, { "code": "1 E31", "description": "Influenza due to identified zoonotic or pandemic influenza virus", "attributes": { "BREATHE recommended": "Y" } }, { "code": "1 E32", "description": "Influenza, virus not identified", "attributes": { "BREATHE recommended": "Y" } }, { "code": "1G40&XN1P6", "description": "Sepsis without septic shock / Haemophilus influenzae", "attributes": { "BREATHE recommended": "N" } }, { "code": "CA40.02", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "BREATHE recommended": "N" } }, { "code": "CA40.12", "description": "Pneumonia due to parainfluenza virus", "attributes": { "BREATHE recommended": "N" } }, { "code": "CA40.1Z", "description": "Viral pneumonia, unspecified", "attributes": { "BREATHE recommended": "N" } }, { "code": "CA42.3", "description": "Acute bronchitis due to Parainfluenza virus", "attributes": { "BREATHE recommended": "N" } }, { "code": "CA42.4", "description": "Acute bronchitis due to Haemophilus influenzae", "attributes": { "BREATHE recommended": "N" } }, { "code": "QC01.8", "description": "Need for immunization against influenza", "attributes": { "BREATHE recommended": "N" } }, { "code": "XN1P6", "description": "Haemophilus influenzae", "attributes": { "BREATHE recommended": "N" } } ] }, { "concept_id": 2499, "concept_version_id": 6398, "concept_name": "Influenza infection Secondary care - 2", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH801", "phenotype_version_id": 2225, "phenotype_name": "Influenza infection Secondary care", "code_attribute_header": [ "BREATHE recommended", "Wabe et al, 2021", "Fitzpatrick et al, 2021", "Moss et al, 2020", "Ramsay et al, 2020", "Verfurden et al , 2020 ", "Iuliano et al, 2018", "Ho et al, 2018", "Bennett et al, 2018", "Acciai et al, 2017", "Hardelid et al, 2017", "Matias et al, 2016", "ONS, 2016", "Fleming et al, 2016", "Cromer et al, 2014", "Auger et al, 2014", "Green et al, 2013", "Henderson et al, 2006", "HDR UK National Phenomics Resource Project 2", "HDR UK National Phenomics Resource Project 3", "", "HDR UK National Phenomics Resource Project 4", "HDR UK National Phenomics Resource Project 5", "Open Safely 8", "LSHTM Data Compass 9" ], "codes": [ { "code": "A41.3", "description": "Sepsis due to Haemophilus influenzae", "attributes": { "BREATHE recommended": "", "Wabe et al, 2021": "", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "", "Iuliano et al, 2018": "", "Ho et al, 2018": "", "Bennett et al, 2018": "", "Acciai et al, 2017": "", "Hardelid et al, 2017": "", "Matias et al, 2016": "", "ONS, 2016": "", "Fleming et al, 2016": "", "Cromer et al, 2014": "", "Auger et al, 2014": "", "Green et al, 2013": "", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "A49.2", "description": "Haemophilus influenzae infection, unspecified site", "attributes": { "BREATHE recommended": "", "Wabe et al, 2021": "", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "", "Iuliano et al, 2018": "", "Ho et al, 2018": "", "Bennett et al, 2018": "", "Acciai et al, 2017": "", "Hardelid et al, 2017": "", "Matias et al, 2016": "", "ONS, 2016": "", "Fleming et al, 2016": "", "Cromer et al, 2014": "", "Auger et al, 2014": "", "Green et al, 2013": "", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J09", "description": "Influenza due to certain identified influenza viruses", "attributes": { "BREATHE recommended": "Y", "Wabe et al, 2021": "Y", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "Y", "Ramsay et al, 2020": "Y", "Verfurden et al , 2020 ": "Y", "Iuliano et al, 2018": "Y", "Ho et al, 2018": "Y", "Bennett et al, 2018": "Y", "Acciai et al, 2017": "Y", "Hardelid et al, 2017": "Y", "Matias et al, 2016": "Y", "ONS, 2016": "Y", "Fleming et al, 2016": "Y", "Cromer et al, 2014": "Y", "Auger et al, 2014": "", "Green et al, 2013": "Y", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "Y", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "Y", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J10", "description": "Influenza due to other identified influenza virus", "attributes": { "BREATHE recommended": "Y", "Wabe et al, 2021": "Y", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "Y", "Ramsay et al, 2020": "Y", "Verfurden et al , 2020 ": "Y", "Iuliano et al, 2018": "Y", "Ho et al, 2018": "Y", "Bennett et al, 2018": "Y", "Acciai et al, 2017": "Y", "Hardelid et al, 2017": "Y", "Matias et al, 2016": "Y", "ONS, 2016": "Y", "Fleming et al, 2016": "Y", "Cromer et al, 2014": "Y", "Auger et al, 2014": "Y", "Green et al, 2013": "Y", "Henderson et al, 2006": "Y", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "Y", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J10.0", "description": "Influenza with pneumonia, seasonal influenza virus identified", "attributes": { "BREATHE recommended": "Y", "Wabe et al, 2021": "Y", "Fitzpatrick et al, 2021": "Y", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "Y", "Iuliano et al, 2018": "Y", "Ho et al, 2018": "Y", "Bennett et al, 2018": "Y", "Acciai et al, 2017": "Y", "Hardelid et al, 2017": "Y", "Matias et al, 2016": "Y", "ONS, 2016": "Y", "Fleming et al, 2016": "Y", "Cromer et al, 2014": "Y", "Auger et al, 2014": "Y", "Green et al, 2013": "Y", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "Y", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "Y", "Open Safely 8": "Y", "LSHTM Data Compass 9": "Y" } }, { "code": "J10.1", "description": "Influenza with other respiratory manifestations, seasonal influenza virus identified", "attributes": { "BREATHE recommended": "Y", "Wabe et al, 2021": "Y", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "Y", "Iuliano et al, 2018": "Y", "Ho et al, 2018": "Y", "Bennett et al, 2018": "Y", "Acciai et al, 2017": "Y", "Hardelid et al, 2017": "Y", "Matias et al, 2016": "Y", "ONS, 2016": "Y", "Fleming et al, 2016": "Y", "Cromer et al, 2014": "Y", "Auger et al, 2014": "Y", "Green et al, 2013": "Y", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "Y", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J10.8", "description": "Influenza with other manifestations, seasonal influenza virus identified", "attributes": { "BREATHE recommended": "Y", "Wabe et al, 2021": "Y", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "Y", "Iuliano et al, 2018": "Y", "Ho et al, 2018": "Y", "Bennett et al, 2018": "Y", "Acciai et al, 2017": "Y", "Hardelid et al, 2017": "Y", "Matias et al, 2016": "Y", "ONS, 2016": "Y", "Fleming et al, 2016": "Y", "Cromer et al, 2014": "Y", "Auger et al, 2014": "Y", "Green et al, 2013": "Y", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "Y", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J11", "description": "Influenza due to unidentified influenza virus", "attributes": { "BREATHE recommended": "Y", "Wabe et al, 2021": "Y", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "Y", "Ramsay et al, 2020": "Y", "Verfurden et al , 2020 ": "Y", "Iuliano et al, 2018": "Y", "Ho et al, 2018": "Y", "Bennett et al, 2018": "Y", "Acciai et al, 2017": "Y", "Hardelid et al, 2017": "Y", "Matias et al, 2016": "Y", "ONS, 2016": "Y", "Fleming et al, 2016": "Y", "Cromer et al, 2014": "Y", "Auger et al, 2014": "Y", "Green et al, 2013": "Y", "Henderson et al, 2006": "Y", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "Y", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J11.0", "description": "Influenza with pneumonia, virus not identified", "attributes": { "BREATHE recommended": "Y", "Wabe et al, 2021": "Y", "Fitzpatrick et al, 2021": "Y", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "Y", "Iuliano et al, 2018": "Y", "Ho et al, 2018": "Y", "Bennett et al, 2018": "Y", "Acciai et al, 2017": "Y", "Hardelid et al, 2017": "Y", "Matias et al, 2016": "Y", "ONS, 2016": "Y", "Fleming et al, 2016": "Y", "Cromer et al, 2014": "Y", "Auger et al, 2014": "Y", "Green et al, 2013": "Y", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "Y", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "Y", "Open Safely 8": "Y", "LSHTM Data Compass 9": "Y" } }, { "code": "J11.1", "description": "Influenza with other respiratory manifestations, virus not identified", "attributes": { "BREATHE recommended": "Y", "Wabe et al, 2021": "Y", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "Y", "Iuliano et al, 2018": "Y", "Ho et al, 2018": "Y", "Bennett et al, 2018": "Y", "Acciai et al, 2017": "Y", "Hardelid et al, 2017": "Y", "Matias et al, 2016": "Y", "ONS, 2016": "Y", "Fleming et al, 2016": "Y", "Cromer et al, 2014": "Y", "Auger et al, 2014": "Y", "Green et al, 2013": "Y", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "Y", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J11.8", "description": "Influenza with other manifestations, virus not identified", "attributes": { "BREATHE recommended": "Y", "Wabe et al, 2021": "Y", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "Y", "Iuliano et al, 2018": "Y", "Ho et al, 2018": "Y", "Bennett et al, 2018": "Y", "Acciai et al, 2017": "Y", "Hardelid et al, 2017": "Y", "Matias et al, 2016": "Y", "ONS, 2016": "Y", "Fleming et al, 2016": "Y", "Cromer et al, 2014": "Y", "Auger et al, 2014": "Y", "Green et al, 2013": "Y", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "Y", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J12.2", "description": "Parainfluenza virus pneumonia", "attributes": { "BREATHE recommended": "", "Wabe et al, 2021": "", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "", "Iuliano et al, 2018": "", "Ho et al, 2018": "", "Bennett et al, 2018": "", "Acciai et al, 2017": "", "Hardelid et al, 2017": "", "Matias et al, 2016": "", "ONS, 2016": "", "Fleming et al, 2016": "", "Cromer et al, 2014": "", "Auger et al, 2014": "", "Green et al, 2013": "", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J14", "description": "Pneumonia due to Haemophilus influenzae", "attributes": { "BREATHE recommended": "", "Wabe et al, 2021": "", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "", "Iuliano et al, 2018": "", "Ho et al, 2018": "", "Bennett et al, 2018": "", "Acciai et al, 2017": "", "Hardelid et al, 2017": "", "Matias et al, 2016": "", "ONS, 2016": "", "Fleming et al, 2016": "", "Cromer et al, 2014": "", "Auger et al, 2014": "", "Green et al, 2013": "", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J20.1", "description": "Acute bronchitis due to Haemophilus influenzae", "attributes": { "BREATHE recommended": "", "Wabe et al, 2021": "", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "", "Iuliano et al, 2018": "", "Ho et al, 2018": "", "Bennett et al, 2018": "", "Acciai et al, 2017": "", "Hardelid et al, 2017": "", "Matias et al, 2016": "", "ONS, 2016": "", "Fleming et al, 2016": "", "Cromer et al, 2014": "", "Auger et al, 2014": "", "Green et al, 2013": "", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "J20.4", "description": "Acute bronchitis due to parainfluenza virus", "attributes": { "BREATHE recommended": "", "Wabe et al, 2021": "", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "", "Iuliano et al, 2018": "", "Ho et al, 2018": "", "Bennett et al, 2018": "", "Acciai et al, 2017": "", "Hardelid et al, 2017": "", "Matias et al, 2016": "", "ONS, 2016": "", "Fleming et al, 2016": "", "Cromer et al, 2014": "", "Auger et al, 2014": "", "Green et al, 2013": "", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } }, { "code": "Z25.1", "description": "Need for immunization against influenza", "attributes": { "BREATHE recommended": "", "Wabe et al, 2021": "", "Fitzpatrick et al, 2021": "", "Moss et al, 2020": "", "Ramsay et al, 2020": "", "Verfurden et al , 2020 ": "", "Iuliano et al, 2018": "", "Ho et al, 2018": "", "Bennett et al, 2018": "", "Acciai et al, 2017": "", "Hardelid et al, 2017": "", "Matias et al, 2016": "", "ONS, 2016": "", "Fleming et al, 2016": "", "Cromer et al, 2014": "", "Auger et al, 2014": "", "Green et al, 2013": "", "Henderson et al, 2006": "", "HDR UK National Phenomics Resource Project 2": "", "HDR UK National Phenomics Resource Project 3": "", "": "", "HDR UK National Phenomics Resource Project 4": "", "HDR UK National Phenomics Resource Project 5": "", "Open Safely 8": "", "LSHTM Data Compass 9": "" } } ] }, { "concept_id": 2498, "concept_version_id": 6396, "concept_name": "Influenza infection Secondary care - 1", "coding_system": { "id": 17, "name": "ICD9 codes", "description": "ICD9 codes" }, "phenotype_id": "PH801", "phenotype_version_id": 2225, "phenotype_name": "Influenza infection Secondary care", "code_attribute_header": [ "BREATHE recommended", "Iuliano et al, 2018", "Ebell et al, 2015", "Goto et al, 2014", "Feemster et al, 2012", "Pitman et al, 2007", "Keren et al, 2006" ], "codes": [ { "code": "487.0", "description": "Influenza", "attributes": { "BREATHE recommended": "Y", "Iuliano et al, 2018": "Y", "Ebell et al, 2015": "", "Goto et al, 2014": "", "Feemster et al, 2012": "", "Pitman et al, 2007": "Y", "Keren et al, 2006": "" } }, { "code": "487.1", "description": "Influenza with other respiratory manifestations", "attributes": { "BREATHE recommended": "Y", "Iuliano et al, 2018": "Y", "Ebell et al, 2015": "y", "Goto et al, 2014": "Y", "Feemster et al, 2012": "Y", "Pitman et al, 2007": "Y", "Keren et al, 2006": "Y" } }, { "code": "487.8", "description": "Influenza with other manifestations", "attributes": { "BREATHE recommended": "Y", "Iuliano et al, 2018": "Y", "Ebell et al, 2015": "Y", "Goto et al, 2014": "Y", "Feemster et al, 2012": "Y", "Pitman et al, 2007": "Y", "Keren et al, 2006": "Y" } }, { "code": "488.0", "description": "Influenza due to certain identified influenza viruses", "attributes": { "BREATHE recommended": "Y", "Iuliano et al, 2018": "Y", "Ebell et al, 2015": "", "Goto et al, 2014": "", "Feemster et al, 2012": "", "Pitman et al, 2007": "Y", "Keren et al, 2006": "" } }, { "code": "488.1", "description": "Influenza due to identified 2009 h1n1 influenza virus", "attributes": { "BREATHE recommended": "Y", "Iuliano et al, 2018": "Y", "Ebell et al, 2015": "Y", "Goto et al, 2014": "", "Feemster et al, 2012": "", "Pitman et al, 2007": "Y", "Keren et al, 2006": "" } }, { "code": "488.8", "description": "Influenza due to novel influenza a", "attributes": { "BREATHE recommended": "Y", "Iuliano et al, 2018": "Y", "Ebell et al, 2015": "", "Goto et al, 2014": "", "Feemster et al, 2012": "", "Pitman et al, 2007": "Y", "Keren et al, 2006": "" } } ] }, { "concept_id": 2497, "concept_version_id": 6394, "concept_name": "Influenza infection Secondary care - BREATHE recommended - 3", "coding_system": { "id": 18, "name": "ICD11 codes", "description": "ICD11 codes" }, "phenotype_id": "PH801", "phenotype_version_id": 2225, "phenotype_name": "Influenza infection Secondary care", "code_attribute_header": [], "codes": [ { "code": "1 E30", "description": "Influenza due to identified seasonal influenza virus", "attributes": {} }, { "code": "1E30&XN5SG", "description": "Influenza due to identified seasonal influenza virus / Influenza virus", "attributes": {} }, { "code": "1 E31", "description": "Influenza due to identified zoonotic or pandemic influenza virus", "attributes": {} }, { "code": "1 E32", "description": "Influenza, virus not identified", "attributes": {} } ] }, { "concept_id": 2496, "concept_version_id": 6392, "concept_name": "Influenza infection Secondary care - BREATHE recommended - 2", "coding_system": { "id": 4, "name": "ICD10 codes", "description": "ICD10 Codes" }, "phenotype_id": "PH801", "phenotype_version_id": 2225, "phenotype_name": "Influenza infection Secondary care", "code_attribute_header": [], "codes": [ { "code": "J09", "description": "Influenza due to certain identified influenza viruses", "attributes": {} }, { "code": "J10", "description": "Influenza due to other identified influenza virus", "attributes": {} }, { "code": "J10.0", "description": "Influenza with pneumonia, seasonal influenza virus identified", "attributes": {} }, { "code": "J10.1", "description": "Influenza with other respiratory manifestations, seasonal influenza virus identified", "attributes": {} }, { "code": "J10.8", "description": "Influenza with other manifestations, seasonal influenza virus identified", "attributes": {} }, { "code": "J11", "description": "Influenza due to unidentified influenza virus", "attributes": {} }, { "code": "J11.0", "description": "Influenza with pneumonia, virus not identified", "attributes": {} }, { "code": "J11.1", "description": "Influenza with other respiratory manifestations, virus not identified", "attributes": {} }, { "code": "J11.8", "description": "Influenza with other manifestations, virus not identified", "attributes": {} } ] }, { "concept_id": 2495, "concept_version_id": 6390, "concept_name": "Influenza infection Secondary care - BREATHE recommended - 1", "coding_system": { "id": 17, "name": "ICD9 codes", "description": "ICD9 codes" }, "phenotype_id": "PH801", "phenotype_version_id": 2225, "phenotype_name": "Influenza infection Secondary care", "code_attribute_header": [], "codes": [ { "code": "487.0", "description": "Influenza", "attributes": {} }, { "code": "487.1", "description": "Influenza with other respiratory manifestations", "attributes": {} }, { "code": "487.8", "description": "Influenza with other manifestations", "attributes": {} }, { "code": "488.0", "description": "Influenza due to certain identified influenza viruses", "attributes": {} }, { "code": "488.1", "description": "Influenza due to identified 2009 h1n1 influenza virus", "attributes": {} }, { "code": "488.8", "description": "Influenza due to novel influenza a", "attributes": {} } ] } ], "status": 2, "doi": "https://doi.org/10.48533/d4va-gj98", "is_deleted": null, "publish_status": 2, "owner": "zinnurar", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 2225, "version_name": "Influenza infection Secondary care", "version_date": "2022-08-04T18:38:56.855467Z", "is_published": true, "is_latest": true }, { "version_id": 1681, "version_name": "Influenza infection Secondary care", "version_date": "2022-01-17T14:00:40.724305Z", "is_published": true, "is_latest": false } ] } ]