[ { "phenotype_id": "PH808", "phenotype_version_id": 2232, "name": "Pertussis or Whooping cough Primary care", "definition": "\n- Not found code search\n- No validations were found via PubMed in the last 12 months", "implementation": "\n\nThese codes are not intended to be mandatory, but are to be used as a starting point for the identification of pertussis or whooping cough in routine Electronic Health Record (EHR). Each study may differ in the sensitivity and specificity of the coding required. \n\n \n\nAccording to the National Health Service (NHS), whooping cough (also called pertussis) is a bacterial infection of the lungs and breathing tubes. It causes repeated coughing bouts that can last for two to three months or more, and can make babies and young children in particular very ill. The first symptoms of whooping cough are similar to those of a cold, such as a runny nose, red and watery eyes, a sore throat, and a slightly raised temperature. Intense coughing bouts start about a week later.\n\nhttps://www.nhs.uk/conditions/whooping-cough/\n\nhttps://www.nhsinform.scot/illnesses-and-conditions/infections-and-poisoning/whooping-cough\n\n \n\nAccording to the National Institute for Health and Care Excellence (NICE) guidelines, Whooping cough, also known as pertussis, is a highly infectious disease caused by the bacterium Bordetella pertussis. It is spread by aerosol droplets released during coughing, and disproportionately affects infants and young children. The incubation period of whooping cough is usually about 7 days, and the person is infectious for 3 weeks after the onset of symptoms.\n\nhttps://cks.nice.org.uk/topics/whooping-cough/\n\nNot found code search\n\n", "publications": [ { "doi": null, "details": "Publications in 2020-2021 identified in PubMed" }, { "doi": "10.1016/j.vaccine.2020.01.100", "details": "Sturkenboom M, Braeye T, van der Aa L, Danieli G, Dodd C, Duarte-Salles T, Emborg HD, Gheorghe M, Kahlert J, Gini R, Huerta-Alvarez C, Martín-Merino E, McGee C, de Lusignan S, Picelli G, Roberto G, Tramontan L, Villa M, Weibel D, Titievsky L. ADVANCE database characterisation and fit for purpose assessment for multi-country studies on the coverage, benefits and risks of pertussis vaccinations. Vaccine. 2020 Dec 22;38 Suppl 2:B8-B21. doi: 10.1016/j.vaccine.2020.01.100. Epub 2020 Feb 12. PMID: 320" }, { "doi": "10.1016/j.vaccine.2019.07.045", "details": "Gini R, Dodd CN, Bollaerts K, Bartolini C, Roberto G, Huerta-Alvarez C, Martín-Merino E, Duarte-Salles T, Picelli G, Tramontan L, Danieli G, Correa A, McGee C, Becker BFH, Switzer C, Gandhi-Banga S, Bauwens J, van der Maas NAT, Spiteri G, Sdona E, Weibel D, Sturkenboom M. Quantifying outcome misclassification in multi-database studies: The case study of pertussis in the ADVANCE project. Vaccine. 2020 Dec 22;38 Suppl 2:B56-B64. doi: 10.1016/j.vaccine.2019.07.045. Epub 2019 Oct 31. PMID: 31677950." }, { "doi": null, "details": ">Code repositories" }, { "doi": "10.1093/jac/dkz163", "details": "**ID**- 1 \n- **Repository**- Manchester ClinicalCodes \n- **Description**- Antibiotic prescribing for common infections in UK general practice: variability and drivers \n- **Conditions**- Cough/cold \n- **Publication**- https://doi.org/10.1093/jac/dkz163 \n- **Clinical codes**- Read Version 2 " }, { "doi": "10.1016/S2589-7500(19)30012-3", "details": "**ID**- 2 \n- **Repository**- HDR UK National Phenomics Resource Project \n- **Description**- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service \n- **Conditions**- Bacterial diseases (excl TB) \n- **Publication**- https://doi.org/10.1016/S2589-7500(19)30012-3 \n- **Clinical codes**- ICD-10 " }, { "doi": "10.1016/S2589-7500(19)30012-3", "details": "**ID**- 3 \n- **Repository**- HDR UK National Phenomics Resource Project \n- **Description**- A chronological map of 308 physical and mental health conditions from 4 million individuals in the English National Health Service \n- **Conditions**- Lower respiratory tract infections \n- **Publication**- https://doi.org/10.1016/S2589-7500(19)30012-3 \n- **Clinical codes**- ICD-11 " }, { "doi": "10.1371/journal.pone.0075131", "details": "**ID**- 4 \n- **Repository**- HDR UK National Phenomics Resource Project \n- **Description**- Incidence of Community-Acquired Lower Respiratory Tract Infections and Pneumonia among Older Adults in the United Kingdom: A Population-Based Study \n- **Conditions**- Pneumonia \n- **Publication**- https://doi.org/10.1371/journal.pone.0075131 \n- **Clinical codes**- Read Version 2, SNOMED CT, ICD-10 & ICD-11 " } ], "validation": "No validations were found via PubMed in the last 12 months", "citation_requirements": "", "created": "2022-01-17T14:01:19.072333Z", "author": "Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou", "collections": [ { "name": "BREATHE", "value": 19 }, { "name": "Phenotype Library", "value": 18 } ], "tags": null, "organisation": null, "world_access": 2, "updated": "2022-08-04T18:39:31.879280Z", "sex": [ { "name": "Both", "value": "3" } ], "type": [ { "name": "Disease or syndrome", "value": "2" } ], "ontology": null, "phenoflowid": "", "data_sources": [ { "name": "CPRD Aurum", "value": 504, "uid": "1d574c14-1af0-490d-9c4e-be88cfd0e345", "url": "https://healthdatagateway.org/en/dataset/692", "datasource_id": 692 }, { "name": "Welsh Longitudinal General Practice Dataset (WLGP) - Welsh Primary Care", "value": 502, "uid": "33fc3ffd-aa4c-4a16-a32f-0c900aaea3d2", "url": "https://healthdatagateway.org/en/dataset/355", "datasource_id": 355 }, { "name": "CPRD GOLD", "value": 503, "uid": "a29feafa-7bdd-44e9-b977-c9d26425e67f", "url": "https://healthdatagateway.org/en/dataset/694", "datasource_id": 694 } ], "coding_system": [ { "name": "Read codes v2", "value": 5 }, { "name": "SNOMED CT codes", "value": 9 }, { "name": "CTV3 codes", "value": 19 } ], "event_date_range": "01/01/2001 to 31/01/2021", "concept_information": [ { "concept_id": 2532, "concept_version_id": 6464, "concept_name": "Pertussis or Whooping cough Primary care - 3", "coding_system": { "id": 19, "name": "CTV3 codes", "description": "CTV3 codes" }, "phenotype_id": "PH808", "phenotype_version_id": 2232, "phenotype_name": "Pertussis or Whooping cough Primary care", "code_attribute_header": [ "BREATHE recommended", "Gini et al, 2020" ], "codes": [ { "code": "65VA.", "description": "Notification of whooping cough", "attributes": { "BREATHE recommended": "Y", "Gini et al, 2020": "Y" } }, { "code": "A33z.", "description": "Whooping cough due to unspecified organism", "attributes": { "BREATHE recommended": "Y", "Gini et al, 2020": "Y" } }, { "code": "Ayu3A", "description": "Whooping cough due to unspecified organism", "attributes": { "BREATHE recommended": "Y", "Gini et al, 2020": "Y" } }, { "code": "H243.", "description": "Pneumonia in pertussis", "attributes": { "BREATHE recommended": "Y", "Gini et al, 2020": "Y" } }, { "code": "X70I8", "description": "Bordetella infections", "attributes": { "BREATHE recommended": "Y", "Gini et al, 2020": "Y" } }, { "code": "X76Hf", "description": "Whooping cough due to unspecified organism", "attributes": { "BREATHE recommended": "Y", "Gini et al, 2020": "Y" } }, { "code": "XE0Qw", "description": "Bordetella infections", "attributes": { "BREATHE recommended": "Y", "Gini et al, 2020": "Y" } }, { "code": "XM00D", "description": "Whooping cough-like syndrome", "attributes": { "BREATHE recommended": "Y", "Gini et al, 2020": "Y" } } ] }, { "concept_id": 2531, "concept_version_id": 6462, "concept_name": "Pertussis or Whooping cough Primary care - 2", "coding_system": { "id": 9, "name": "SNOMED CT codes", "description": "SNOMED CT codes" }, "phenotype_id": "PH808", "phenotype_version_id": 2232, "phenotype_name": "Pertussis or Whooping cough Primary care", "code_attribute_header": [ "SNOMED CT Concept ID", "SNOMED CT Description ID", "Read v2", "BREATHE recommended", "Sturkenboom et al, 2020", "Gini et al, 2020", "Becker et al, 2017", "HDR UK National Phenomics Resource Project 4" ], "codes": [ { "code": "1227543018", "description": "[V]Whooping cough vaccination", "attributes": { "SNOMED CT Concept ID": "39343008", "SNOMED CT Description ID": "65969010", "Read v2": "ZV03611", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "1229516015", "description": "Whooping cough vaccination", "attributes": { "SNOMED CT Concept ID": "39343008", "SNOMED CT Description ID": "1229516015", "Read v2": "655..11", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "286448015", "description": "Whooping cough - other specified organism", "attributes": { "SNOMED CT Concept ID": "27836007", "SNOMED CT Description ID": "46586010", "Read v2": "A33y.00", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "Y", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "286451010", "description": "Other whooping cough NOS", "attributes": { "SNOMED CT Concept ID": "27836007", "SNOMED CT Description ID": "46586010", "Read v2": "A33yz00", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "Y", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "286452015", "description": "Whooping cough NOS", "attributes": { "SNOMED CT Concept ID": "27836007", "SNOMED CT Description ID": "46589015", "Read v2": "A33z.00", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "Y", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "288039014", "description": "[X]Whooping cough due to other Bordetella species", "attributes": { "SNOMED CT Concept ID": "27836007", "SNOMED CT Description ID": "46586010", "Read v2": "Ayu3900", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "Y", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "2946741000006110", "description": "Infection due to Bordetella pertussis", "attributes": { "SNOMED CT Concept ID": "27836007", "SNOMED CT Description ID": "46588011", "Read v2": "", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "301128017", "description": "Acute bronchiolitis due to respiratory syncytial virus", "attributes": { "SNOMED CT Concept ID": "195739001", "SNOMED CT Description ID": "301128017", "Read v2": "H061500", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "301362011", "description": "Pneumonia due to respiratory syncytial virus", "attributes": { "SNOMED CT Concept ID": "195881003", "SNOMED CT Description ID": "301362011", "Read v2": "H201.00", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "3133011000006112", "description": "Whooping cough immunization", "attributes": { "SNOMED CT Concept ID": "39343008", "SNOMED CT Description ID": "65970011", "Read v2": "", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "3133041000006111", "description": "RSV nucleic acid detection", "attributes": { "SNOMED CT Concept ID": "39343008", "SNOMED CT Description ID": "492037018", "Read v2": "", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "317301000006111", "description": "[M]Syncytial meningioma", "attributes": { "SNOMED CT Concept ID": "68944005", "SNOMED CT Description ID": "114505018", "Read v2": "BBd3.12", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "3208291000006112", "description": "Hodgkin's disease, nodular sclerosis, syncytial variant", "attributes": { "SNOMED CT Concept ID": "43985008", "SNOMED CT Description ID": "73345016", "Read v2": "", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "3621181000006115", "description": "Syncytial meningioma", "attributes": { "SNOMED CT Concept ID": "68944005", "SNOMED CT Description ID": "114505018", "Read v2": "", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "4780491000006118", "description": "Acute respiratory syncytial virus bronchitis", "attributes": { "SNOMED CT Concept ID": "195727009", "SNOMED CT Description ID": "301115012", "Read v2": "", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "4780571000006115", "description": "Acute bronchiolitis caused by respiratory syncytial virus", "attributes": { "SNOMED CT Concept ID": "195739001", "SNOMED CT Description ID": "3290582012", "Read v2": "", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "4781131000006116", "description": "Pneumonia caused by respiratory syncytial virus", "attributes": { "SNOMED CT Concept ID": "195881003", "SNOMED CT Description ID": "3291454010", "Read v2": "", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "689481000000119", "description": "Respiratory syncytial virus A detected", "attributes": { "SNOMED CT Concept ID": "440929004", "SNOMED CT Description ID": "2791867012", "Read v2": "4JU9.00", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "689541000000114", "description": "Respiratory syncytial virus B detected", "attributes": { "SNOMED CT Concept ID": "441048007", "SNOMED CT Description ID": "2794534015", "Read v2": "4JUA.00", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "689601000000110", "description": "Respiratory syncytial virus untyped strain detected", "attributes": { "SNOMED CT Concept ID": "441278007", "SNOMED CT Description ID": "2790181019", "Read v2": "4JUB.00", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "743621000033110", "description": "Pertussis Toxoid", "attributes": { "SNOMED CT Concept ID": "743621000033106", "SNOMED CT Description ID": "743621000033110", "Read v2": "", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "885221000006117", "description": "Whooping cough pneumonia", "attributes": { "SNOMED CT Concept ID": "59475000", "SNOMED CT Description ID": "885221000006117", "Read v2": "H243.99", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "92677014", "description": "Respiratory syncytial virus infection", "attributes": { "SNOMED CT Concept ID": "55735004", "SNOMED CT Description ID": "92677014", "Read v2": "A79A.00", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "Not added - 1", "description": "Whooping cough", "attributes": { "SNOMED CT Concept ID": "Not added", "SNOMED CT Description ID": "Not added", "Read v2": "A33..", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "Y", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "Not added - 2", "description": "Bordetella pertussis", "attributes": { "SNOMED CT Concept ID": "Not added", "SNOMED CT Description ID": "Not added", "Read v2": "A330.", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "Y", "Gini et al, 2020": "Y", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "Not added - 3", "description": "[X] Whooping cough, unspecified", "attributes": { "SNOMED CT Concept ID": "Not added", "SNOMED CT Description ID": "Not added", "Read v2": "Ayu3A", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "Y", "Gini et al, 2020": "Y", "Becker et al, 2017": "Y", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "Not added - 4", "description": "Pneumonia with whooping cough", "attributes": { "SNOMED CT Concept ID": "59475000", "SNOMED CT Description ID": "1230000000", "Read v2": "H243.", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "Y", "Gini et al, 2020": "Y", "Becker et al, 2017": "Y", "HDR UK National Phenomics Resource Project 4": "Y" } }, { "code": "Not added - 5", "description": "Whooping cough-like syndrome", "attributes": { "SNOMED CT Concept ID": "Not added", "SNOMED CT Description ID": "Not added", "Read v2": "XM00D", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "Y", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "Not added -6", "description": "Notification of whooping cough", "attributes": { "SNOMED CT Concept ID": "Not added", "SNOMED CT Description ID": "Not added", "Read v2": "65VA.", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "Y", "Becker et al, 2017": "", "HDR UK National Phenomics Resource Project 4": "" } } ] }, { "concept_id": 2530, "concept_version_id": 6460, "concept_name": "Pertussis or Whooping cough Primary care - 1", "coding_system": { "id": 5, "name": "Read codes v2", "description": "Read codes v2" }, "phenotype_id": "PH808", "phenotype_version_id": 2232, "phenotype_name": "Pertussis or Whooping cough Primary care", "code_attribute_header": [ "CPRD GOLD Med", "BREATHE recommended", "Sturkenboom et al, 2020", "Gini et al, 2020", "Becker et al, 2017", "Manchester Clinical Codes 1", "HDR UK National Phenomics Resource Project 4" ], "codes": [ { "code": "43jk.00", "description": "RSV nucleic acid detection", "attributes": { "CPRD GOLD Med": "70173", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "43wE.00", "description": "Bordetella pertussis deoxyribonucleic acid detection", "attributes": { "CPRD GOLD Med": "110596", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "4JU9.00", "description": "Respiratory syncytial virus A detected", "attributes": { "CPRD GOLD Med": "96556", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "4JUA.00", "description": "Respiratory syncytial virus B detected", "attributes": { "CPRD GOLD Med": "96323", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "65VA.", "description": "Notification of whooping cough", "attributes": { "CPRD GOLD Med": "", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "Y", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "A33..", "description": "Whooping cough", "attributes": { "CPRD GOLD Med": "", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "Y", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "Y", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "A330.", "description": "Bordetella pertussis", "attributes": { "CPRD GOLD Med": "", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "Y", "Gini et al, 2020": "Y", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "A33y.00", "description": "Whooping cough - other specified organism", "attributes": { "CPRD GOLD Med": "53897", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "Y", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "A33yz00", "description": "Other whooping cough NOS", "attributes": { "CPRD GOLD Med": "64286", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "Y", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "A33z.00", "description": "Whooping cough NOS", "attributes": { "CPRD GOLD Med": "42548", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "Y", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "A79A.00", "description": "Respiratory syncytial virus infection", "attributes": { "CPRD GOLD Med": "12573", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "A7y0200", "description": "Resp syncytial virus as cause of dis class to other chapters", "attributes": { "CPRD GOLD Med": "24462", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "Ayu3900", "description": "[X]Whooping cough due to other Bordetella species", "attributes": { "CPRD GOLD Med": "114952", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "Y", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "Ayu3A", "description": "[X] Whooping cough, unspecified", "attributes": { "CPRD GOLD Med": "", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "Y", "Gini et al, 2020": "Y", "Becker et al, 2017": "Y", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "H060D00", "description": "Acute bronchitis due to respiratory syncytial virus", "attributes": { "CPRD GOLD Med": "48593", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "H061500", "description": "Acute bronchiolitis due to respiratory syncytial virus", "attributes": { "CPRD GOLD Med": "18451", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "H201.00", "description": "Pneumonia due to respiratory syncytial virus", "attributes": { "CPRD GOLD Med": "31269", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "H243.", "description": "Pneumonia with whooping cough", "attributes": { "CPRD GOLD Med": "", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "Y", "Gini et al, 2020": "Y", "Becker et al, 2017": "Y", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "Y" } }, { "code": "SLK8.00", "description": "Diptheria,tetanus,pertussis and polio vaccine poisoning", "attributes": { "CPRD GOLD Med": "51676", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "XM00D", "description": "Whooping cough-like syndrome", "attributes": { "CPRD GOLD Med": "", "BREATHE recommended": "Y", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "Y", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "ZV03611", "description": "[V]Whooping cough vaccination", "attributes": { "CPRD GOLD Med": "30197", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } }, { "code": "ZV06200", "description": "[V]Diphtheria-tetanus-pertussis + typhoid-paratyphoid vacc", "attributes": { "CPRD GOLD Med": "51652", "BREATHE recommended": "", "Sturkenboom et al, 2020": "", "Gini et al, 2020": "", "Becker et al, 2017": "", "Manchester Clinical Codes 1": "", "HDR UK National Phenomics Resource Project 4": "" } } ] }, { "concept_id": 2529, "concept_version_id": 6458, "concept_name": "Pertussis or Whooping cough Primary care - BREATHE recommended - 3", "coding_system": { "id": 19, "name": "CTV3 codes", "description": "CTV3 codes" }, "phenotype_id": "PH808", "phenotype_version_id": 2232, "phenotype_name": "Pertussis or Whooping cough Primary care", "code_attribute_header": [], "codes": [ { "code": "65VA.", "description": "Notification of whooping cough", "attributes": {} }, { "code": "A33z.", "description": "Whooping cough due to unspecified organism", "attributes": {} }, { "code": "Ayu3A", "description": "Whooping cough due to unspecified organism", "attributes": {} }, { "code": "H243.", "description": "Pneumonia in pertussis", "attributes": {} }, { "code": "X70I8", "description": "Bordetella infections", "attributes": {} }, { "code": "X76Hf", "description": "Whooping cough due to unspecified organism", "attributes": {} }, { "code": "XE0Qw", "description": "Bordetella infections", "attributes": {} }, { "code": "XM00D", "description": "Whooping cough-like syndrome", "attributes": {} } ] }, { "concept_id": 2528, "concept_version_id": 6456, "concept_name": "Pertussis or Whooping cough Primary care - BREATHE recommended - 2", "coding_system": { "id": 9, "name": "SNOMED CT codes", "description": "SNOMED CT codes" }, "phenotype_id": "PH808", "phenotype_version_id": 2232, "phenotype_name": "Pertussis or Whooping cough Primary care", "code_attribute_header": [], "codes": [ { "code": "286448015", "description": "Whooping cough - other specified organism", "attributes": {} }, { "code": "286451010", "description": "Other whooping cough NOS", "attributes": {} }, { "code": "286452015", "description": "Whooping cough NOS", "attributes": {} }, { "code": "288039014", "description": "[X]Whooping cough due to other Bordetella species", "attributes": {} }, { "code": "Not added - 1", "description": "Whooping cough", "attributes": {} }, { "code": "Not added - 2", "description": "Bordetella pertussis", "attributes": {} }, { "code": "Not added - 3", "description": "[X] Whooping cough, unspecified", "attributes": {} }, { "code": "Not added - 4", "description": "Pneumonia with whooping cough", "attributes": {} }, { "code": "Not added - 5", "description": "Whooping cough-like syndrome", "attributes": {} }, { "code": "Not added -6", "description": "Notification of whooping cough", "attributes": {} } ] }, { "concept_id": 2527, "concept_version_id": 6454, "concept_name": "Pertussis or Whooping cough Primary care - BREATHE recommended - 1", "coding_system": { "id": 5, "name": "Read codes v2", "description": "Read codes v2" }, "phenotype_id": "PH808", "phenotype_version_id": 2232, "phenotype_name": "Pertussis or Whooping cough Primary care", "code_attribute_header": [], "codes": [ { "code": "65VA.", "description": "Notification of whooping cough", "attributes": {} }, { "code": "A33..", "description": "Whooping cough", "attributes": {} }, { "code": "A330.", "description": "Bordetella pertussis", "attributes": {} }, { "code": "A33y.00", "description": "Whooping cough - other specified organism", "attributes": {} }, { "code": "A33yz00", "description": "Other whooping cough NOS", "attributes": {} }, { "code": "A33z.00", "description": "Whooping cough NOS", "attributes": {} }, { "code": "Ayu3900", "description": "[X]Whooping cough due to other Bordetella species", "attributes": {} }, { "code": "Ayu3A", "description": "[X] Whooping cough, unspecified", "attributes": {} }, { "code": "H243.", "description": "Pneumonia with whooping cough", "attributes": {} }, { "code": "XM00D", "description": "Whooping cough-like syndrome", "attributes": {} } ] } ], "status": 2, "doi": "https://doi.org/10.48533/zwtr-4w29", "is_deleted": null, "publish_status": 2, "owner": "zinnurar", "template": { "id": 1, "name": "Clinical-Coded Phenotype", "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.", "version_id": 1 }, "versions": [ { "version_id": 2232, "version_name": "Pertussis or Whooping cough Primary care", "version_date": "2022-08-04T18:39:32.181665Z", "is_published": true, "is_latest": true }, { "version_id": 1695, "version_name": "Pertussis or Whooping cough Primary care", "version_date": "2022-01-17T14:01:19.122582Z", "is_published": true, "is_latest": false } ] } ]