[
  {
    "phenotype_id": "PH819",
    "phenotype_version_id": 2253,
    "name": "Tuberculosis Secondary care",
    "definition": "The aim of this research work was to identify relevant diagnosis codes available in routine electronic health records from primary and secondary care settings in the UK. We looked for relevant codes in code repositories such as the University of Cambrigdge Primary Care Unit, Manchester Clinical Codes, HDR UK National Phenomics Resource Project, Oxford-RCGP RSC, OpenSAFELY and LSHTM Data Compass. We also searched for peer-reviewed studies published  via PubMed in the last 12 months for any relevant codes. Please note that these codes are not intended to be mandatory, but are to be used as a starting point for the identification of Tuberculosis in routine electronic health record. Therefore, each study may differ in the sensitivity and specificity of the coding required. \n- No validation available",
    "implementation": "\n\nAccording to NHS, tuberculosis is a bacterial infection spread through inhaling tiny droplets from the coughs or sneezes of an infected person. It mainly affects the lungs, but it can affect any part of the body, including the tummy (abdomen), glands, bones and nervous system.\n\nhttps://www.nhs.uk/conditions/tuberculosis-tb/\n\nNot found code search\n\n",
    "publications": [
      {
        "doi": null,
        "details": "No publications idenified via Pubmed in the last 12 months "
      }
    ],
    "validation": null,
    "citation_requirements": "",
    "created": "2022-01-21T07:12:48.539952Z",
    "author": "Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou",
    "collections": [
      {
        "name": "BREATHE",
        "value": 19
      },
      {
        "name": "Phenotype Library",
        "value": 18
      }
    ],
    "tags": null,
    "organisation": null,
    "world_access": 2,
    "updated": "2022-08-04T18:57:02.107882Z",
    "sex": [
      {
        "name": "Both",
        "value": "3"
      }
    ],
    "type": [
      {
        "name": "Disease or syndrome",
        "value": "2"
      }
    ],
    "ontology": null,
    "phenoflowid": "",
    "data_sources": [
      {
        "name": "Hospital Episode Statistics Admitted Patient Care",
        "value": 2,
        "uid": "6599230a-df54-4615-937c-d724d239491f",
        "url": "https://healthdatagateway.org/en/dataset/875",
        "datasource_id": 875
      },
      {
        "name": "Patient Episode Dataset for Wales (PEDW)",
        "value": 379,
        "uid": "4c33a5d2-164c-41d7-9797-dc2b008cc852",
        "url": "https://healthdatagateway.org/en/dataset/318",
        "datasource_id": 318
      },
      {
        "name": "Annual District Death Extract (ADDE)",
        "value": 50,
        "uid": "15cf4241-abad-4dcc-95b0-8cd7c02be999",
        "url": "https://healthdatagateway.org/en/dataset/316",
        "datasource_id": 316
      },
      {
        "name": "Civil Registration - Deaths",
        "value": 3,
        "uid": "b9009bc5-b7a6-4036-9d4b-a5133c0b14a3",
        "url": "https://healthdatagateway.org/en/dataset/877",
        "datasource_id": 877
      }
    ],
    "coding_system": [
      {
        "name": "ICD10 codes",
        "value": 4
      },
      {
        "name": "ICD11 codes",
        "value": 18
      }
    ],
    "event_date_range": "01/01/2001 to 31/01/2021",
    "concept_information": [
      {
        "concept_id": 2573,
        "concept_version_id": 6546,
        "concept_name": "Tuberculosis Secondary care -  2",
        "coding_system": {
          "id": 18,
          "name": "ICD11 codes",
          "description": "ICD11 codes"
        },
        "phenotype_id": "PH819",
        "phenotype_version_id": 2253,
        "phenotype_name": "Tuberculosis Secondary care",
        "code_attribute_header": [
          "BREATHE recommended"
        ],
        "codes": [
          {
            "code": "1B10.0",
            "description": "Respiratory tuberculosis, confirmed",
            "attributes": {
              "BREATHE recommended": "Y"
            }
          },
          {
            "code": "1B10.1",
            "description": "Respiratory tuberculosis, not confirmed",
            "attributes": {
              "BREATHE recommended": "Y"
            }
          },
          {
            "code": "1B10.Z",
            "description": "Respiratory tuberculosis, without mention of bacteriological or histological confirmation",
            "attributes": {
              "BREATHE recommended": "Y"
            }
          },
          {
            "code": "1B14",
            "description": "Latent tuberculosis",
            "attributes": {
              "BREATHE recommended": "Y"
            }
          },
          {
            "code": "1B1Z",
            "description": "Tuberculosis, unspecified",
            "attributes": {
              "BREATHE recommended": "Y"
            }
          },
          {
            "code": "CA60.3",
            "description": "Pneumoconiosis associated with tuberculosis",
            "attributes": {
              "BREATHE recommended": "Y"
            }
          },
          {
            "code": "QA02.0",
            "description": "Observation for suspected tuberculosis, ruled out",
            "attributes": {
              "BREATHE recommended": "N"
            }
          },
          {
            "code": "QA08.1",
            "description": "Special screening examination for respiratory tuberculosis",
            "attributes": {
              "BREATHE recommended": "N"
            }
          },
          {
            "code": "QC00.2",
            "description": "Need for immunization against tuberculosis",
            "attributes": {
              "BREATHE recommended": "N"
            }
          }
        ]
      },
      {
        "concept_id": 2572,
        "concept_version_id": 6544,
        "concept_name": "Tuberculosis Secondary care -  1",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH819",
        "phenotype_version_id": 2253,
        "phenotype_name": "Tuberculosis Secondary care",
        "code_attribute_header": [
          "BREATHE recommended",
          ""
        ],
        "codes": [
          {
            "code": "A15",
            "description": "Respiratory tuberculosis, bacteriologically and histologically confirmed",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15.0",
            "description": "Tuberculosis of lung, confirmed by sputum microscopy with or without culture",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15.1",
            "description": "Tuberculosis of lung, confirmed by culture only",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15.2",
            "description": "Tuberculosis of lung, confirmed histologically",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15.3",
            "description": "Tuberculosis of lung, confirmed by unspecified means",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15.4",
            "description": "Tuberculosis of intrathoracic lymph nodes, confirmed bacteriologically and histologically",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15.5",
            "description": "Tuberculosis of larynx, trachea and bronchus, confirmed bacteriologically and histologically",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15.6",
            "description": "Tuberculous pleurisy, confirmed bacteriologically and histologically",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15.7",
            "description": "Primary respiratory tuberculosis, confirmed bacteriologically and histologically",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15.8",
            "description": "Other respiratory tuberculosis, confirmed bacteriologically and histologically",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15.9",
            "description": "Respiratory tuberculosis unspecified, confirmed bacteriologically and histologically",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A15-A19",
            "description": "Tuberculosis",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A16",
            "description": "Respiratory tuberculosis, not confirmed bacteriologically or histologically",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A16.0",
            "description": "Tuberculosis of lung, bacteriologically and histologically negative",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A16.1",
            "description": "Tuberculosis of lung, bacteriological and histological examination not done",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A16.2",
            "description": "Tuberculosis of lung, without mention of bacteriological or histological confirmation",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A16.3",
            "description": "Tuberculosis of intrathoracic lymph nodes, without mention of bacteriological or histological confirmation",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A16.4",
            "description": "Tuberculosis of larynx, trachea and bronchus, without mention of bacteriological or histological confirmation",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A16.5",
            "description": "Tuberculous pleurisy, without mention of bacteriological or histological confirmation",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A16.7",
            "description": "Primary respiratory tuberculosis without mention of bacteriological or histological confirmation",
            "attributes": {
              "BREATHE recommended": "",
              "": "Y"
            }
          },
          {
            "code": "A16.8",
            "description": "Other respiratory tuberculosis, without mention of bacteriological or histological confirmation",
            "attributes": {
              "BREATHE recommended": "Y",
              "": ""
            }
          },
          {
            "code": "A16.9",
            "description": "Respiratory tuberculosis unspecified, without mention of bacteriological or histological confirmation",
            "attributes": {
              "BREATHE recommended": "Y",
              "": ""
            }
          },
          {
            "code": "B90.9",
            "description": "Sequelae of respiratory and unspecified tuberculosis",
            "attributes": {
              "BREATHE recommended": "N",
              "": ""
            }
          },
          {
            "code": "J65",
            "description": "Pneumoconiosis associated with tuberculosis",
            "attributes": {
              "BREATHE recommended": "Y",
              "": ""
            }
          },
          {
            "code": "Z03.0",
            "description": "Observation for suspected tuberculosis",
            "attributes": {
              "BREATHE recommended": "N",
              "": ""
            }
          },
          {
            "code": "Z11.1",
            "description": "Special screening examination for respiratory tuberculosis",
            "attributes": {
              "BREATHE recommended": "N",
              "": ""
            }
          },
          {
            "code": "Z20.1",
            "description": "Contact with and exposure to tuberculosis",
            "attributes": {
              "BREATHE recommended": "N",
              "": ""
            }
          },
          {
            "code": "Z22.7",
            "description": "Latent tuberculosis",
            "attributes": {
              "BREATHE recommended": "Y",
              "": ""
            }
          },
          {
            "code": "Z23.2",
            "description": "Need for immunization against tuberculosis [BCG]",
            "attributes": {
              "BREATHE recommended": "N",
              "": ""
            }
          }
        ]
      },
      {
        "concept_id": 2571,
        "concept_version_id": 6542,
        "concept_name": "Tuberculosis Secondary care - BREATHE recommended - 2",
        "coding_system": {
          "id": 18,
          "name": "ICD11 codes",
          "description": "ICD11 codes"
        },
        "phenotype_id": "PH819",
        "phenotype_version_id": 2253,
        "phenotype_name": "Tuberculosis Secondary care",
        "code_attribute_header": [],
        "codes": [
          {
            "code": "1B10.0",
            "description": "Respiratory tuberculosis, confirmed",
            "attributes": {}
          },
          {
            "code": "1B10.1",
            "description": "Respiratory tuberculosis, not confirmed",
            "attributes": {}
          },
          {
            "code": "1B10.Z",
            "description": "Respiratory tuberculosis, without mention of bacteriological or histological confirmation",
            "attributes": {}
          },
          {
            "code": "1B14",
            "description": "Latent tuberculosis",
            "attributes": {}
          },
          {
            "code": "1B1Z",
            "description": "Tuberculosis, unspecified",
            "attributes": {}
          },
          {
            "code": "CA60.3",
            "description": "Pneumoconiosis associated with tuberculosis",
            "attributes": {}
          }
        ]
      },
      {
        "concept_id": 2570,
        "concept_version_id": 6540,
        "concept_name": "Tuberculosis Secondary care - BREATHE recommended - 1",
        "coding_system": {
          "id": 4,
          "name": "ICD10 codes",
          "description": "ICD10 Codes"
        },
        "phenotype_id": "PH819",
        "phenotype_version_id": 2253,
        "phenotype_name": "Tuberculosis Secondary care",
        "code_attribute_header": [],
        "codes": [
          {
            "code": "A16.8",
            "description": "Other respiratory tuberculosis, without mention of bacteriological or histological confirmation",
            "attributes": {}
          },
          {
            "code": "A16.9",
            "description": "Respiratory tuberculosis unspecified, without mention of bacteriological or histological confirmation",
            "attributes": {}
          },
          {
            "code": "J65",
            "description": "Pneumoconiosis associated with tuberculosis",
            "attributes": {}
          },
          {
            "code": "Z22.7",
            "description": "Latent tuberculosis",
            "attributes": {}
          }
        ]
      }
    ],
    "status": 2,
    "doi": "https://doi.org/10.48533/29tc-4770",
    "is_deleted": null,
    "publish_status": 2,
    "owner": "zinnurar",
    "template": {
      "id": 1,
      "name": "Clinical-Coded Phenotype",
      "description": "Phenotype definitions that are based on lists of clinical codes, or algorithms using clinical codes.",
      "version_id": 1
    },
    "versions": [
      {
        "version_id": 2253,
        "version_name": "Tuberculosis Secondary care",
        "version_date": "2022-08-04T18:57:02.418195Z",
        "is_published": true,
        "is_latest": true
      },
      {
        "version_id": 1717,
        "version_name": "Tuberculosis Secondary care",
        "version_date": "2022-01-21T07:12:48.582823Z",
        "is_published": true,
        "is_latest": false
      }
    ]
  }
]