Cholangitis - Primary care

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

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Read codes v2
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CALIBER Phenotype Library



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Clinical Code List

Name Version Type Logical type  
kuan_cholangitis_mNzDobbnJ9ssEhnW6TS2m7_Read2 - Expression Select Add codes
Code Description
J620100 Liver abscess due to cholangitis
J646.00 Calculus of bile duct with cholangitis
J661000 Acute cholangitis
J661100 Chronic cholangitis
J661200 Recurrent cholangitis
J661300 Suppurative cholangitis
J661400 Ascending cholangitis
J661500 Cholangitis lenta
J661600 Obliterative cholangitis
J661700 Primary sclerosing cholangitis

Rows: 15
Code Description Disease Medcode Category
J620100 Liver abscess due to cholangitis Cholangitis 25341.0 Diagnosis of Cholangitis
J646.00 Calculus of bile duct with cholangitis Cholangitis 24866.0 Diagnosis of Cholangitis
J661.00 Cholangitis Cholangitis 10431.0 Diagnosis of Cholangitis
J661000 Acute cholangitis Cholangitis 40416.0 Diagnosis of Cholangitis
J661100 Chronic cholangitis Cholangitis 51530.0 Diagnosis of Cholangitis
J661200 Recurrent cholangitis Cholangitis 15678.0 Diagnosis of Cholangitis
J661300 Suppurative cholangitis Cholangitis 41470.0 Diagnosis of Cholangitis
J661400 Ascending cholangitis Cholangitis 34753.0 Diagnosis of Cholangitis
J661500 Cholangitis lenta Cholangitis 66226.0 Diagnosis of Cholangitis
J661600 Obliterative cholangitis Cholangitis 97670.0 Diagnosis of Cholangitis
J661700 Primary sclerosing cholangitis Cholangitis 15425.0 Diagnosis of Cholangitis
J661800 Secondary sclerosing cholangitis Cholangitis 35667.0 Diagnosis of Cholangitis
J661900 Sclerosing cholangitis unspecified Cholangitis 44791.0 Diagnosis of Cholangitis
J661y00 Other cholangitis Cholangitis 33339.0 Diagnosis of Cholangitis
J661z00 Cholangitis NOS Cholangitis 64412.0 Diagnosis of Cholangitis


To Export Concept Details:

Format API
XML site_root/api/v1/public/concepts/C1061/version/3261/detail/?format=xml
JSON site_root/api/v1/public/concepts/C1061/version/3261/detail/?format=json
R Package

# Download here


# Connect to API

client = connect_to_API(public=TRUE)

# Get details of concept

details = get_concept_detail_by_version('C1061', '3261', api_client=client)

To Export Concept Code List:

Format API
XML site_root/api/v1/public/concepts/C1061/version/3261/export/codes/?format=xml
JSON site_root/api/v1/public/concepts/C1061/version/3261/export/codes/?format=json
CSV site_root/concepts/C1061/version/3261/export/codes/
R Package

# Download here


# Connect to API

client = connect_to_API(public=TRUE)

# Get codelist of concept

codelist = get_concept_code_list_by_version('C1061', '3261', api_client=client)

Version History

Name Description Owner Publish date
3261 Cholangitis - Primary care ieuan.scanlon 2021-10-06 currently shown

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Components are individual rules matching a set of codes. One or more components are used to define the codes contained within a concept.