Tonsillitis Primary care

Chukwuma Iwundu, Clare MacRae, Eleftheria Vasileiou

PH814 / 2248 Clinical-Coded Phenotype

  1. Overview

    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    01/01/2001 to 31/01/2021
    Coding System
    Read codes v2SNOMED CT codes
    Data Sources
    Welsh Longitudinal General Practice Dataset (WLGP) , Clinical Practice Research Datalink AURUM , Clinical Practice Research Datalink GOLD
    Collections
    BREATHEPhenotype Library
    Tags
    No data

  2. Definition

    The aim of this research work was to identify relevant diagnosis codes available in routine electronic health records from primary and secondary care settings in the UK. We looked for relevant codes in code repositories such as the University of Cambrigdge Primary Care Unit, Manchester Clinical Codes, HDR UK National Phenomics Resource Project, Oxford-RCGP RSC, OpenSAFELY and LSHTM Data Compass. We also searched for peer-reviewed studies published via PubMed in the last 12 months for any relevant codes. Please note that these codes are not intended to be mandatory, but are to be used as a starting point for the identification of Tonsillitis in routine electronic health record. Therefore, each study may differ in the sensitivity and specificity of the coding required. - No validations available

  3. Implementation

    Implementation

    According to NHS, tonsillitis is an infection of the tonsils at the backof your throat. It is a common childhood illness, but teenagers and adults can get it too.

    https://www.nhs.uk/conditions/tonsillitis/

    Not found code search

  4. Clinical Code List

  5. Publication

    • Publications in 2020-2021 identified in PubMed

    • Sanders O, Bolton L, Nemeth Z, Hardy A, Meghji S. A 4-year retrospective study of tonsillectomy rate and admission rate of tonsillitis and complications in the East of England and nationally. Eur Arch Otorhinolaryngol. 2021 Jul;278(7):2613-2618. doi: 10.1007/s00405-020-06591-7. Epub 2021 Jan 9. PMID: 33420839.

      (DOI:10.1007/s00405-020-06591-7)

    Citation Requirements

    No data

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH814/version/2248/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH814',
     version_id=2248
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_detail(
     'PH814',
     version_id=2248
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH814/version/2248/export/codes/?format=json
    CSV site_root/phenotypes/PH814/version/2248/export/codes/
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH814',
     version_id=2248
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH814',
     version_id=2248
    )

  7. Version History

    Version IDNameOwnerPublish date
    2248 Tonsillitis Primary care zinnurar2022-08-09currently shown
    1707 Tonsillitis Primary care zinnurar2022-01-21