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COVID-19 infection - Primary Care

BHF CVD COVID UK Consortium

ID
C714
Version ID
2567
Coding system
SNOMED CT codes
Collections
BHF Data Science Centre Phenotype Library
Tags
No tags
Owner
ieuan.scanlon

Description

No data available

Publications

Primary publication DOI
No data available
Primary publication link
No data available
Secondary publication link
No data available
Paper published
Not published ✘
Source reference
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Citation requirements
No data available

Clinical Code List


Name Version Type Logical type  
cvdcoviduk_COVID19_bhfcvdcoviduk_SNOMEDCT - Expression Select Add codes
Code Description
1300721000000109 Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 confirmed by laboratory test (situation)
1240751000000100 Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 (disorder)
1240581000000104 Severe acute respiratory syndrome coronavirus 2 ribonucleic acid detected (finding)
1008541000000105 Coronavirus ribonucleic acid detection assay (observable entity)
186747009 Coronavirus infection (disorder)
1300731000000106 Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 confirmed using clinical diagnostic criteria (situation)
1240511000000106 Detection of severe acute respiratory syndrome coronavirus 2 using polymerase chain reaction technique (procedure)
1240551000000105 Pneumonia caused by severe acute respiratory syndrome coronavirus 2 (disorder)
1240741000000103 Severe acute respiratory syndrome coronavirus 2 serology (observable entity)
1300681000000102 Assessment using coronavirus disease 19 severity scale (procedure)
...

Rows: 37
Code Description type
1008541000000105 Coronavirus ribonucleic acid detection assay (observable entity) 1
1029481000000103 Coronavirus nucleic acid detection assay (observable entity) 1
120814005 Coronavirus antibody (substance) 1
1240391000000107 Antigen of severe acute respiratory syndrome coronavirus 2 (substance) 1
1240401000000105 Antibody to severe acute respiratory syndrome coronavirus 2 (substance) 1
1240421000000101 Serotype severe acute respiratory syndrome coronavirus 2 (qualifier value) 1
1240511000000106 Detection of severe acute respiratory syndrome coronavirus 2 using polymerase chain reaction technique (procedure) 1
1240521000000100 Otitis media caused by severe acute respiratory syndrome coronavirus 2 (disorder) 1
1240531000000103 Myocarditis caused by severe acute respiratory syndrome coronavirus 2 (disorder) 1
1240541000000107 Infection of upper respiratory tract caused by severe acute respiratory syndrome coronavirus 2 (disorder) 1
1240551000000105 Pneumonia caused by severe acute respiratory syndrome coronavirus 2 (disorder) 1
1240561000000108 Encephalopathy caused by severe acute respiratory syndrome coronavirus 2 (disorder) 1
1240571000000101 Gastroenteritis caused by severe acute respiratory syndrome coronavirus 2 (disorder) 1
1240581000000104 Severe acute respiratory syndrome coronavirus 2 ribonucleic acid detected (finding) 1
1240741000000103 Severe acute respiratory syndrome coronavirus 2 serology (observable entity) 1
1240751000000100 Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 (disorder) 1
1300631000000101 Coronavirus disease 19 severity score (observable entity) 1
1300671000000104 Coronavirus disease 19 severity scale (assessment scale) 1
1300681000000102 Assessment using coronavirus disease 19 severity scale (procedure) 1
1300721000000109 Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 confirmed by laboratory test (situation) 1
1300731000000106 Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 confirmed using clinical diagnostic criteria (situation) 1
1321181000000108 Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 record extraction simple reference set (foundation metadata concept) 1
1321191000000105 Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 procedures simple reference set (foundation metadata concept) 1
1321201000000107 Coronavirus disease 19 caused by severe acute respiratory syndrome coronavirus 2 health issues simple reference set (foundation metadata concept) 1
1321241000000105 Cardiomyopathy caused by severe acute respiratory syndrome coronavirus 2 (disorder) 1
1321301000000101 Severe acute respiratory syndrome coronavirus 2 ribonucleic acid qualitative existence in specimen (observable entity) 1
1321311000000104 Severe acute respiratory syndrome coronavirus 2 immunoglobulin M qualitative existence in specimen (observable entity) 1
1321321000000105 Severe acute respiratory syndrome coronavirus 2 immunoglobulin G qualitative existence in specimen (observable entity) 1
1321331000000107 Arbitrary concentration of severe acute respiratory syndrome coronavirus 2 total immunoglobulin in serum (observable entity) 1
1321341000000103 Arbitrary concentration of severe acute respiratory syndrome coronavirus 2 immunoglobulin G in serum (observable entity) 1
1321351000000100 Arbitrary concentration of severe acute respiratory syndrome coronavirus 2 immunoglobulin M in serum (observable entity) 1
1321541000000108 Severe acute respiratory syndrome coronavirus 2 immunoglobulin G detected (finding) 1
1321551000000106 Severe acute respiratory syndrome coronavirus 2 immunoglobulin M detected (finding) 1
1321761000000103 Severe acute respiratory syndrome coronavirus 2 immunoglobulin A detected (finding) 1
1322781000000102 Severe acute respiratory syndrome coronavirus 2 antigen detection result positive (finding) 1
1322871000000109 Severe acute respiratory syndrome coronavirus 2 antibody detection result positive (finding) 1
186747009 Coronavirus infection (disorder) 1

API

To Export Concept Details:

Format API
XML site_root/api/v1/public/concepts/C714/version/2567/detail/?format=xml
JSON site_root/api/v1/public/concepts/C714/version/2567/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of concept

details = get_concept_detail_by_version('C714', '2567', api_client=client)

To Export Concept Code List:

Format API
XML site_root/api/v1/public/concepts/C714/version/2567/export/codes/?format=xml
JSON site_root/api/v1/public/concepts/C714/version/2567/export/codes/?format=json
CSV site_root/concepts/C714/version/2567/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelist of concept

codelist = get_concept_code_list_by_version('C714', '2567', api_client=client)

Version History

Version
ID		 Name Owner Publish date
2567 COVID-19 infection - Primary Care ieuan.scanlon 2021-10-06 currently shown

Export - Export all codes into a csv file/JSON/XML for the current concept version.

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Components are individual rules matching a set of codes. One or more components are used to define the codes contained within a concept.