Pneumonia - Primary care

Eleanor L Axson, Jennifer K Quint

ID
C751
Version ID
2641
Coding system
Read codes v2
Tags /Collections
Phenotype Library
Owner
ieuan.scanlon

Description

Publications

Primary publication DOI
Primary publication link
Secondary publication link
Paper published
Source reference
Citation requirements

Clinical Code List


Name Version Type Logical type  
axson_pneumonia_GL46c8PLQMdPuj7QuPtEh9_SNOMEDCT - Expression Select Add codes
Code Description
AyuKA00 [X]Klebsiella pneumoniae/cause/disease classifd/oth chapters
AyuK900 [X]Mycoplasma pneumoniae [PPLO]cause/dis classifd/oth chaptr
Hyu0A00 [X]Other bacterial pneumonia
Hyu0H00 [X]Other pneumonia, organism unspecified
Hyu0800 [X]Other viral pneumonia
Hyu0B00 [X]Pneumonia due to other specified infectious organisms
H530300 Abscess of lung with pneumonia
H28..00 Atypical pneumonia
H22z.00 Bacterial pneumonia NOS
H261.00 Basal pneumonia due to unspecified organism
...

Rows: 88
Code Description Hospital-Acquired SNOMED CT Description ID SNOMED CT Concept ID Community-Acquired Read Codes used by Braeken et al. 2017
4JUK.00 Mycoplasma pneumoniae detected 2792339011 440990006
A022200 Salmonella pneumonia 5303018 2523007 Y
A116.00 Tuberculous pneumonia 132731014 80003002
A3BXA00 Mycoplasma pneumoniae [PPLO] cause/dis classifd/oth chaptr 2158243017 406595002
A3BXB00 Klebsiella pneumoniae/cause/disease classifd/oth chapters 492755015 40733004
A3By.00 Other specified bacterial infection 145291019 87628006 Y
A521.00 Varicella pneumonitis 301400016 195911009 Y
A54x400 Herpes simplex pneumonia 350073012 233624006 Y
A551.00 Postmeasles pneumonia 294997017 191727003 Y
AyuK900 [X]Mycoplasma pneumoniae [PPLO]cause/dis classifd/oth chaptr 2158243917 406595002
AyuKA00 [X]Klebsiella pneumoniae/cause/disease classifd/oth chapters 492755015 40733004
H20..00 Viral pneumonia 125510013 75570004 Y
H20..11 Chest infection- viral pneumonia 125510013 75570004 Y
H200.00 Pneumonia due to adenovirus 68738015 41207000 Y
H201.00 Pneumonia due to respiratory syncytial virus 301362011 195881003 Y
H202.00 Pneumonia due to parainfluenza virus 499984015 64917006 Y
H20y.00 Viral pneumonia NEC 125510013 75570004 Y
H20z.00 Viral pneumonia NOS 125510013 75570004 Y
H21..00 Lobar (pneumococcal) pneumonia 396103010 266350000 Y
H21..11 Chest infection- pneumococcal pneumonia 396103010 266350000 Y
H21..99 Lobar-penumococcal-pneumonia 885191000006112 266350000
H22..00 Other bacterial pneumonia 88303013 53084003
H22..11 Chest infection- other bacterial pneumonia 88303013 53084003 Y
H220.00 Pneumonia due to Klebsiella pneumoniae 107173015 64479007 Y
H221.00 Pneumonia due to pseudomonas 69027016 41381004 Y
H222.00 Pneumonia due to Haemophilus influenzae 116320011 70036007 Y
H222.11 Pneumonia due to Haemophilus influenzae 116320011 70036007 Y
H223.00 Pneumonia due to streptococcus 56817014 34020007 Y
H223000 Pneumonia due to streptococcus, group B 301369019 195886008 Y
H224.00 Pneumonia due to staphylococcus 38198016 22754005 Y
H22y.00 Pneumonia due to other specified bacteria 88303013 53084003 Y
H22y000 Pneumonia due to Escherichia coli 1230992012 51530003 Y
H22y011 E.coli pneumonia 1230992012 51530003 Y
H22y100 Pneumonia due to proteus 301371019 195888009 Y
H22y200 Pneumonia- legionella 301372014 195889001 Y
H22yx00 Pneumonia due to other aerobic gram-negative bacteria 88303013 53084003 Y
H22yz00 Pneumonia due to bacteria NOS 88303013 53084003 Y
H22z.00 Bacterial pneumonia NOS 88303013 53084003 Y
H23..00 Pneumonia due to other specified organisms 456043010 312342009 Y
H23..11 Chest infection- pneumonia organisms OS 456043010 312342009 Y
H231.00 Pneumonia due to Mycoplasma pneumoniae 494705012 46970008 Y
H231.99 Mycoplasma pneumonia 78272011 46970008
H232.00 Pneumonia due to pleuropneumonia like organisms 301380019 195896004 Y
H233.00 Chlamydial pneumonia 350054013 233609002 Y
H23z.00 Pneumonia due to specified organism NOS 456043010 312342009 Y
H24..00 Pneumonia with infectious disease EC 456043010 312342009 Y
H240.00 Pneumonia with measles 301386013 195900001 Y
H240.99 Measles pneumonia 301386013 195900001
H243.00 Pneumonia with whooping cough 1231963019 59475000 Y
H243.11 Pneumonia with pertussis 1231962012 59475000 Y
H243.99 Whooping cough pneumonia 885221000006117 59475000
H246.00 Pneumonia with aspergillosis 1219703018 111900000 Y
H24y.00 Pneumonia with infectious diseases EC 456043010 312342009 Y
H24y000 Pneumonia with actinomycosis 301395017 195908008 Y
H24y200 Pneumonia with pneumocystis carinii 2533533015 415125002 Y
H24y700 Pneumonia with varicella 301399011 195911009 Y
H24yz00 Pneumonia with other infectious diseases EC NOS 456043010 312342009 Y
H24z.00 Pneumonia with infectious diseases EC NOS 456043010 312342009 Y
H25..00 Bronchopneumonia due to unspecified organism 1776258010 396285007 Y
H25..11 Chest infection- unspecified bronchopneumonia 1776258010 396285007 Y
H25..99 Bronchopneumonia 885231000006119 689401000000108
H26..00 Pneumonia due to unspecified organism 456043010 312342009 Y
H26..11 Chest infection- pneumonia due to unspecified organism 456043010 312342009 Y
H260.00 Lobar pneumonia due to unspecified organism 415454013 278516003 Y
H260000 Lung consolidation 512123013 95436008 Y
H261.00 Basal pneumonia due to unspecified organism 442211014 300999006 Y
H262.00 Postoperative pneumonia 459416013 314978007
H263.00 Pneumonitis 314740018 205237003 Y
H270.00 Influenza with pneumonia 301357010 195878008 Y
H270.11 Chest infection- influenza with pneumonia 301357010 195878008 Y
H270.99 Influenza + pneumonia 885251000006114 195878008
H270000 Influenza with bronchopneumonia 1229740013 41269000
H270100 Influenza with pneumonia, influenza virus identified 301357010 195878008 Y
H270z00 Other specified pneumonia or influenza 301357010 195878008 Y
H28..00 Atypical pneumonia 350051017 233606009 Y
H2?00 Pneumonia and influenza 301357010 195878008 Y
H2B..00 Community acquired pneumonia 1479355018 385093006 Y Y
H2C..00 Hospital acquired pneumonia Y 2674072012 425464007
H2y..00 Other specified pneumonia or influenza 301357010 195878008 Y
H2z..00 Pneumonia or influenza NOS 301357010 195878008 Y
H2z..98 Bilateral pneumonia 932231000006112 540151000000108
H530300 Abscess of lung with pneumonia 301686019 196112005 Y
H56y100 Interstitial pneumonia 107470010 64667001 Y
H571.00 Rheumatic pneumonia 13455018 7548000
Hyu0800 [X]Other viral pneumonia 125510013 75570004 Y
Hyu0A00 [X]Other bacterial pneumonia 88303013 53084003 Y
Hyu0B00 [X]Pneumonia due to other specified infectious organisms 456043010 312342009 Y
Hyu0H00 [X]Other pneumonia, organism unspecified 456043010 312342009

API

To Export Concept Details:

Format API
XML site_root/api/v1/public/concepts/C751/version/2641/detail/?format=xml
JSON site_root/api/v1/public/concepts/C751/version/2641/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of concept

details = get_concept_detail_by_version('C751', '2641', api_client=client)

To Export Concept Code List:

Format API
XML site_root/api/v1/public/concepts/C751/version/2641/export/codes/?format=xml
JSON site_root/api/v1/public/concepts/C751/version/2641/export/codes/?format=json
CSV site_root/concepts/C751/version/2641/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelist of concept

codelist = get_concept_code_list_by_version('C751', '2641', api_client=client)

Version History

Version
ID
Name Description Owner Publish date
2641 Pneumonia - Primary care ieuan.scanlon 2021-10-06 currently shown

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Components are individual rules matching a set of codes. One or more components are used to define the codes contained within a concept.