Pneumonia - Primary care

Eleanor L Axson, Jennifer K Quint

ID
C751
Version ID
2641
Coding system
Read codes v2
Collections
Phenotype Library
Tags
No tags
Owner
ieuan.scanlon

Description

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Publications

Primary publication DOI
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Primary publication link
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Secondary publication link
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Paper published
Published ✔
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Citation requirements
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Clinical Code List


Name Version Type Logical type  
axson_pneumonia_GL46c8PLQMdPuj7QuPtEh9_SNOMEDCT - Expression Select Add codes
Code Description
AyuKA00 [X]Klebsiella pneumoniae/cause/disease classifd/oth chapters
AyuK900 [X]Mycoplasma pneumoniae [PPLO]cause/dis classifd/oth chaptr
Hyu0A00 [X]Other bacterial pneumonia
Hyu0H00 [X]Other pneumonia, organism unspecified
Hyu0800 [X]Other viral pneumonia
Hyu0B00 [X]Pneumonia due to other specified infectious organisms
H530300 Abscess of lung with pneumonia
H28..00 Atypical pneumonia
H22z.00 Bacterial pneumonia NOS
H261.00 Basal pneumonia due to unspecified organism
...

Rows: 88
Code Description Hospital-Acquired SNOMED CT Description ID SNOMED CT Concept ID Community-Acquired Read Codes used by Braeken et al. 2017
4JUK.00 Mycoplasma pneumoniae detected 2792339011 440990006
A022200 Salmonella pneumonia 5303018 2523007 Y
A116.00 Tuberculous pneumonia 132731014 80003002
A3BXA00 Mycoplasma pneumoniae [PPLO] cause/dis classifd/oth chaptr 2158243017 406595002
A3BXB00 Klebsiella pneumoniae/cause/disease classifd/oth chapters 492755015 40733004
A3By.00 Other specified bacterial infection 145291019 87628006 Y
A521.00 Varicella pneumonitis 301400016 195911009 Y
A54x400 Herpes simplex pneumonia 350073012 233624006 Y
A551.00 Postmeasles pneumonia 294997017 191727003 Y
AyuK900 [X]Mycoplasma pneumoniae [PPLO]cause/dis classifd/oth chaptr 2158243917 406595002
AyuKA00 [X]Klebsiella pneumoniae/cause/disease classifd/oth chapters 492755015 40733004
H20..00 Viral pneumonia 125510013 75570004 Y
H20..11 Chest infection- viral pneumonia 125510013 75570004 Y
H200.00 Pneumonia due to adenovirus 68738015 41207000 Y
H201.00 Pneumonia due to respiratory syncytial virus 301362011 195881003 Y
H202.00 Pneumonia due to parainfluenza virus 499984015 64917006 Y
H20y.00 Viral pneumonia NEC 125510013 75570004 Y
H20z.00 Viral pneumonia NOS 125510013 75570004 Y
H21..00 Lobar (pneumococcal) pneumonia 396103010 266350000 Y
H21..11 Chest infection- pneumococcal pneumonia 396103010 266350000 Y
H21..99 Lobar-penumococcal-pneumonia 885191000006112 266350000
H22..00 Other bacterial pneumonia 88303013 53084003
H22..11 Chest infection- other bacterial pneumonia 88303013 53084003 Y
H220.00 Pneumonia due to Klebsiella pneumoniae 107173015 64479007 Y
H221.00 Pneumonia due to pseudomonas 69027016 41381004 Y
H222.00 Pneumonia due to Haemophilus influenzae 116320011 70036007 Y
H222.11 Pneumonia due to Haemophilus influenzae 116320011 70036007 Y
H223.00 Pneumonia due to streptococcus 56817014 34020007 Y
H223000 Pneumonia due to streptococcus, group B 301369019 195886008 Y
H224.00 Pneumonia due to staphylococcus 38198016 22754005 Y
H22y.00 Pneumonia due to other specified bacteria 88303013 53084003 Y
H22y000 Pneumonia due to Escherichia coli 1230992012 51530003 Y
H22y011 E.coli pneumonia 1230992012 51530003 Y
H22y100 Pneumonia due to proteus 301371019 195888009 Y
H22y200 Pneumonia- legionella 301372014 195889001 Y
H22yx00 Pneumonia due to other aerobic gram-negative bacteria 88303013 53084003 Y
H22yz00 Pneumonia due to bacteria NOS 88303013 53084003 Y
H22z.00 Bacterial pneumonia NOS 88303013 53084003 Y
H23..00 Pneumonia due to other specified organisms 456043010 312342009 Y
H23..11 Chest infection- pneumonia organisms OS 456043010 312342009 Y
H231.00 Pneumonia due to Mycoplasma pneumoniae 494705012 46970008 Y
H231.99 Mycoplasma pneumonia 78272011 46970008
H232.00 Pneumonia due to pleuropneumonia like organisms 301380019 195896004 Y
H233.00 Chlamydial pneumonia 350054013 233609002 Y
H23z.00 Pneumonia due to specified organism NOS 456043010 312342009 Y
H24..00 Pneumonia with infectious disease EC 456043010 312342009 Y
H240.00 Pneumonia with measles 301386013 195900001 Y
H240.99 Measles pneumonia 301386013 195900001
H243.00 Pneumonia with whooping cough 1231963019 59475000 Y
H243.11 Pneumonia with pertussis 1231962012 59475000 Y
H243.99 Whooping cough pneumonia 885221000006117 59475000
H246.00 Pneumonia with aspergillosis 1219703018 111900000 Y
H24y.00 Pneumonia with infectious diseases EC 456043010 312342009 Y
H24y000 Pneumonia with actinomycosis 301395017 195908008 Y
H24y200 Pneumonia with pneumocystis carinii 2533533015 415125002 Y
H24y700 Pneumonia with varicella 301399011 195911009 Y
H24yz00 Pneumonia with other infectious diseases EC NOS 456043010 312342009 Y
H24z.00 Pneumonia with infectious diseases EC NOS 456043010 312342009 Y
H25..00 Bronchopneumonia due to unspecified organism 1776258010 396285007 Y
H25..11 Chest infection- unspecified bronchopneumonia 1776258010 396285007 Y
H25..99 Bronchopneumonia 885231000006119 689401000000108
H26..00 Pneumonia due to unspecified organism 456043010 312342009 Y
H26..11 Chest infection- pneumonia due to unspecified organism 456043010 312342009 Y
H260.00 Lobar pneumonia due to unspecified organism 415454013 278516003 Y
H260000 Lung consolidation 512123013 95436008 Y
H261.00 Basal pneumonia due to unspecified organism 442211014 300999006 Y
H262.00 Postoperative pneumonia 459416013 314978007
H263.00 Pneumonitis 314740018 205237003 Y
H270.00 Influenza with pneumonia 301357010 195878008 Y
H270.11 Chest infection- influenza with pneumonia 301357010 195878008 Y
H270.99 Influenza + pneumonia 885251000006114 195878008
H270000 Influenza with bronchopneumonia 1229740013 41269000
H270100 Influenza with pneumonia, influenza virus identified 301357010 195878008 Y
H270z00 Other specified pneumonia or influenza 301357010 195878008 Y
H28..00 Atypical pneumonia 350051017 233606009 Y
H2?00 Pneumonia and influenza 301357010 195878008 Y
H2B..00 Community acquired pneumonia 1479355018 385093006 Y Y
H2C..00 Hospital acquired pneumonia Y 2674072012 425464007
H2y..00 Other specified pneumonia or influenza 301357010 195878008 Y
H2z..00 Pneumonia or influenza NOS 301357010 195878008 Y
H2z..98 Bilateral pneumonia 932231000006112 540151000000108
H530300 Abscess of lung with pneumonia 301686019 196112005 Y
H56y100 Interstitial pneumonia 107470010 64667001 Y
H571.00 Rheumatic pneumonia 13455018 7548000
Hyu0800 [X]Other viral pneumonia 125510013 75570004 Y
Hyu0A00 [X]Other bacterial pneumonia 88303013 53084003 Y
Hyu0B00 [X]Pneumonia due to other specified infectious organisms 456043010 312342009 Y
Hyu0H00 [X]Other pneumonia, organism unspecified 456043010 312342009

API

To Export Concept Details:

Format API
XML site_root/api/v1/public/concepts/C751/version/2641/detail/?format=xml
JSON site_root/api/v1/public/concepts/C751/version/2641/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of concept

details = get_concept_detail_by_version('C751', '2641', api_client=client)

To Export Concept Code List:

Format API
XML site_root/api/v1/public/concepts/C751/version/2641/export/codes/?format=xml
JSON site_root/api/v1/public/concepts/C751/version/2641/export/codes/?format=json
CSV site_root/concepts/C751/version/2641/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelist of concept

codelist = get_concept_code_list_by_version('C751', '2641', api_client=client)

Version History

Version
ID
Name Owner Publish date
2641 Pneumonia - Primary care ieuan.scanlon 2021-10-06 currently shown

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Components are individual rules matching a set of codes. One or more components are used to define the codes contained within a concept.