Pneumonia - Mortality

Eleanor L Axson, Jennifer K Quint

ID
C755
Version ID
2649
Coding system
ICD10 codes
Tags /Collections
Phenotype Library
Owner
ieuan.scanlon

Description

Publications

Primary publication DOI
Primary publication link
Secondary publication link
Paper published
Source reference
Citation requirements

Clinical Code List


Name Version Type Logical type  
axson_pneumonia_GL46c8PLQMdPuj7QuPtEh9_ICD10 - Expression Select Add codes
Code Description
J10.0 Influenza with pneumonia, other influenza virus identified
J11.0 Influenza with pneumonia, virus not identified
J12 Viral pneumonia, not elsewhere classified
J13 Pneumonia due to Streptococcus pneumoniae
J14 Pneumonia due to Haemophilus influenzae
J15 Bacterial pneumonia, not elsewhere classified
J16 Pneumonia due to other infectious organisms, not elsewhere classified
J17 Pneumonia in diseases classified elsewhere
J18 Pneumonia, organism unspecified
B01.2+ Varicella pneumonia
...

Rows: 10
Code Description
B01.2+ Varicella pneumonia
J10.0 Influenza with pneumonia, other influenza virus identified
J11.0 Influenza with pneumonia, virus not identified
J12 Viral pneumonia, not elsewhere classified
J13 Pneumonia due to Streptococcus pneumoniae
J14 Pneumonia due to Haemophilus influenzae
J15 Bacterial pneumonia, not elsewhere classified
J16 Pneumonia due to other infectious organisms, not elsewhere classified
J17 Pneumonia in diseases classified elsewhere
J18 Pneumonia, organism unspecified

API

To Export Concept Details:

Format API
XML site_root/api/v1/public/concepts/C755/version/2649/detail/?format=xml
JSON site_root/api/v1/public/concepts/C755/version/2649/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of concept

details = get_concept_detail_by_version('C755', '2649', api_client=client)

To Export Concept Code List:

Format API
XML site_root/api/v1/public/concepts/C755/version/2649/export/codes/?format=xml
JSON site_root/api/v1/public/concepts/C755/version/2649/export/codes/?format=json
CSV site_root/concepts/C755/version/2649/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelist of concept

codelist = get_concept_code_list_by_version('C755', '2649', api_client=client)

Version History

Version
ID
Name Description Owner Publish date
2649 Pneumonia - Mortality ieuan.scanlon 2021-10-06 currently shown

Export - Export all codes into a csv file/JSON/XML for the current concept version.

Print - Print page.

Components are individual rules matching a set of codes. One or more components are used to define the codes contained within a concept.