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Infection of anal and rectal regions

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH100
Version ID
200
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
ICD10 codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Infection of anal and rectal regions IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

  1. ALL diagnoses of Infection of anal and rectal regions or history of diagnosis during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 7
Code Description Disease Category
A51.1 Primary anal syphilis Infection of anal and rectal regions Diagnosis of Infection of anal and rectal regions
A54.6 Gonococcal infection of anus and rectum Infection of anal and rectal regions Diagnosis of Infection of anal and rectal regions
A56.3 Chlamydial infection of anus and rectum Infection of anal and rectal regions Diagnosis of Infection of anal and rectal regions
A60.1 Herpesviral infection of perianal skin and rectum Infection of anal and rectal regions Diagnosis of Infection of anal and rectal regions
A60.9 Anogenital herpesviral infection, unspecified Infection of anal and rectal regions Diagnosis of Infection of anal and rectal regions
A63.0 Anogenital (venereal) warts Infection of anal and rectal regions Diagnosis of Infection of anal and rectal regions
K61 Abscess of anal and rectal regions Infection of anal and rectal regions Diagnosis of Infection of anal and rectal regions

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH100/version/200/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH100/version/200/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH100', '200', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH100/version/200/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH100/version/200/export/codes/?format=json
CSV site_root/phenotypes/PH100/version/200/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH100', '200', api_client=client)

Version History

Version
ID
Name Owner Publish date
200 Infection of anal and rectal regions ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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