Phenotype Library | phenotype: Infection of anal and rectal regions

Infection of anal and rectal regions

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

PH100

Version ID

200

Type

Disease or Syndrome

Data Sources

HES Admitted Patient Care data for CPRD GOLD

Valid event data range

01/01/1999 - 01/07/2016

Sex

♀ Female ♂ Male

Agreement Date

2019-05-20

Coding system

ICD10 codes

Collections

CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had Infection of anal and rectal regions IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Secondary care

ALL diagnoses of Infection of anal and rectal regions or history of diagnosis during a hospitalization

Implementation

PhenoFlow Implementation:

https://kclhi.org/phenoflow/phenotype/download/295

Publications

Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

CSV

JSON

XML

Expand All / Collapse All

C964/3067 Infection of anal and rectal regions - Secondary care - Diagnoses - ICD10 codes

Rows: 7

Code	Description	Disease	Category
A51.1	Primary anal syphilis	Infection of anal and rectal regions	Diagnosis of Infection of anal and rectal regions
A54.6	Gonococcal infection of anus and rectum	Infection of anal and rectal regions	Diagnosis of Infection of anal and rectal regions
A56.3	Chlamydial infection of anus and rectum	Infection of anal and rectal regions	Diagnosis of Infection of anal and rectal regions
A60.1	Herpesviral infection of perianal skin and rectum	Infection of anal and rectal regions	Diagnosis of Infection of anal and rectal regions
A60.9	Anogenital herpesviral infection, unspecified	Infection of anal and rectal regions	Diagnosis of Infection of anal and rectal regions
A63.0	Anogenital (venereal) warts	Infection of anal and rectal regions	Diagnosis of Infection of anal and rectal regions
K61	Abscess of anal and rectal regions	Infection of anal and rectal regions	Diagnosis of Infection of anal and rectal regions

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH100/version/200/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH100/version/200/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH100', '200', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH100/version/200/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH100/version/200/export/codes/?format=json
CSV	site_root/phenotypes/PH100/version/200/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH100', '200', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
200	Infection of anal and rectal regions	ieuan.scanlon	2021-10-06	currently shown