Cancer

PH1001 / 2179

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

May 17, 2022

BHF Data Science Centre Phenotype

  1. Overview

    Project Name
    CCU002_02
    Phenotype Type
    Disease or syndrome
    Sex
    Both
    Valid Event Date Range
    08/12/2020 - 18/03/2021
    Coding System
    ICD10 codesSNOMED CT codes
    Data Sources
    GPES Data for Pandemic Planning and Research (COVID-19)
    Hospital Episode Statistics Admitted Patient Care
    Civil Registration - Deaths
    Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT
    Secondary Uses Services Payment By Results
    Ontology
    No data
    Collections
    BHF Data Science CentrePhenotype Library
    Tags
    No data

  2. Definition

    Definition

    Code type is set to 1 for incident events, and 0 for prevalent events.

    Clinical Trials

    No Trials

    Endorsements

    No endorsement

  3. Implementation

    Implementation

    No data

  4. Clinical Codelist

  5. Publication

    Related publications

    • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

    Citation Example

    CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow. PH1001 / 2179 - Cancer. Phenotype Library [Online]. 17 May 2022. Available from: http://phenotypes.healthdatagateway.org/phenotypes/PH1001/version/2179/detail/. [Accessed 27 January 2026]

  6. API

    To Export Phenotype Details:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1001/version/2179/detail/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get details of Phenotype

    phenotype_details = client$phenotypes$get_detail(
     'PH1001',
     version_id=2179
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get details of Phenotype

    phenotype_detail = client.phenotypes.get_detail(
     'PH1001',
     version_id=2179
    )

    To Export Phenotype Code List:

    FormatAPI
    JSON site_root/api/v1/phenotypes/PH1001/version/2179/export/codes/?format=json
    R Package

    # Download here

    library(ConceptLibraryClient)


    # Connect to API

    client = ConceptLibraryClient::Connection$new(public=TRUE)


    # Get codelist of Phenotype

    phenotype_codelist = client$phenotypes$get_codelist(
     'PH1001',
     version_id=2179
    )

    Py Package

    # Download here

    from pyconceptlibraryclient import Client


    # Connect to API

    client = Client(public=True)


    # Get codelist of Phenotype

    phenotype_codelist = client.phenotypes.get_codelist(
     'PH1001',
     version_id=2179
    )

  7. Version History

    Version IDNameOwnerPublish date
    Cancer ieuan.scanlon2022-05-17 21:22
    2081 Cancer ieuan.scanlon2022-05-09 08:01