Phenotype Library | phenotype: CCU002

CCU002_02 Cardiomyopathy

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

Type

Disease or Syndrome

PH1002

Version ID

2180

Data Sources

GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results

Valid event data range

08/12/2020 - 18/03/2021

Sex

Female, Male

Agreement Date

2021-08-23

Coding system

ICD10 codes SNOMED CT codes

Tags /Collections

BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

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C2867/7388 CCU002_02 Cardiomyopathy - Phenotypes - England hospitalization EHR: Cardiomyopathy diagnosis - ICD10 codes

Rows: 9

Code	Description	terminology	code_type
I25.5	Ischaemic cardiomyopathy	ICD10	1.0
I42.0	Dilated cardiomyopathy	ICD10	1.0
I42.3	Endomyocardial (eosinophilic) disease	ICD10	1.0
I42.5	Other restrictive cardiomyopathy	ICD10	1.0
I42.6	Alcoholic cardiomyopathy	ICD10	1.0
I42.7	Cardiomyopathy due to drugs and other external agents	ICD10	1.0
I42.8	Other cardiomyopathies	ICD10	1.0
I42.9	Cardiomyopathy, unspecified	ICD10	1.0
I43	Cardiomyopathy in diseases classified elsewhere	ICD10	1.0

C2868/7389 CCU002_02 Cardiomyopathy - Phenotypes - England primary care EHR: Cardiomyopathy diagnosis - SNOMED CT codes

Rows: 3

Code	Description	terminology	code_type
1321241000000105	Cardiomyopathy caused by severe acute respiratory syndrome coronavirus 2 (disorder)	SNOMEDCT	1.0
240072005	Benign scapuloperoneal muscular dystrophy with cardiomyopathy (disorder)	SNOMEDCT	1.0
240077004	Severe scapuloperoneal muscular dystrophy with cardiomyopathy (disorder)	SNOMEDCT	1.0

API

To Export Phenotype Details:

Format	API
XML	site_root/api/v1/public/phenotypes/PH1002/version/2180/detail/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH1002/version/2180/detail/?format=json
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get details of phenotype details = get_phenotype_detail_by_version('PH1002', '2180', api_client=client)`

To Export Phenotype Code List:

Format	API
XML	site_root/api/v1/public/phenotypes/PH1002/version/2180/export/codes/?format=xml
JSON	site_root/api/v1/public/phenotypes/PH1002/version/2180/export/codes/?format=json
CSV	site_root/phenotypes/PH1002/version/2180/export/codes/
R Package	`# Download here library(ConceptLibraryClient) # Connect to API client = connect_to_API(public=TRUE) # Get codelists of phenotype codelists = get_phenotype_code_list('PH1002', '2180', api_client=client)`

Version History

Version ID	Name	Owner	Publish date
2180	CCU002_02 Cardiomyopathy	ieuan.scanlon	2022-05-17	currently shown
2083	CCU002_02 Cardiomyopathy	ieuan.scanlon	2022-05-09