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CCU002_02 Cardiomyopathy

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

Type
Disease or Syndrome
ID
PH1002
Version ID
2180
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results
Valid event data range
08/12/2020 - 18/03/2021
Sex
Female, Male
Agreement Date
2021-08-23
Coding system
ICD10 codes SNOMED CT codes
Tags /Collections
BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Rows: 9
Code Description terminology code_type
I25.5 Ischaemic cardiomyopathy ICD10 1.0
I42.0 Dilated cardiomyopathy ICD10 1.0
I42.3 Endomyocardial (eosinophilic) disease ICD10 1.0
I42.5 Other restrictive cardiomyopathy ICD10 1.0
I42.6 Alcoholic cardiomyopathy ICD10 1.0
I42.7 Cardiomyopathy due to drugs and other external agents ICD10 1.0
I42.8 Other cardiomyopathies ICD10 1.0
I42.9 Cardiomyopathy, unspecified ICD10 1.0
I43 Cardiomyopathy in diseases classified elsewhere ICD10 1.0
Rows: 3
Code Description terminology code_type
1321241000000105 Cardiomyopathy caused by severe acute respiratory syndrome coronavirus 2 (disorder) SNOMEDCT 1.0
240072005 Benign scapuloperoneal muscular dystrophy with cardiomyopathy (disorder) SNOMEDCT 1.0
240077004 Severe scapuloperoneal muscular dystrophy with cardiomyopathy (disorder) SNOMEDCT 1.0

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH1002/version/2180/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1002/version/2180/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH1002', '2180', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH1002/version/2180/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1002/version/2180/export/codes/?format=json
CSV site_root/phenotypes/PH1002/version/2180/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH1002', '2180', api_client=client)

Version History

Version
ID
Name Owner Publish date
2180 CCU002_02 Cardiomyopathy ieuan.scanlon 2022-05-17 currently shown
2083 CCU002_02 Cardiomyopathy ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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