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CCU002_02 Depression

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

Type
Disease or Syndrome
ID
PH1005
Version ID
2183
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results
Valid event data range
08/12/2020 - 18/03/2021
Sex
Female, Male
Agreement Date
2021-08-23
Coding system
ICD10 codes SNOMED CT codes
Tags /Collections
BHF Data Science Centre Phenotype Library

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Rows: 2
Code Description terminology code_type
F32 Depressive episode ICD10 1.0
F33 Recurrent depressive disorder ICD10 1.0
Rows: 67
Code Description terminology code_type
1086471000000103 Recurrent reactive depressive episodes, severe, with psychosis (disorder) SNOMEDCT 1.0
1086661000000108 Reactive depression, prolonged single episode (disorder) SNOMEDCT 1.0
1089511000000100 Recurrent depression with current severe episode and psychotic features (disorder) SNOMEDCT 1.0
1089631000000109 Recurrent depression with current severe episode without psychotic features (disorder) SNOMEDCT 1.0
1089641000000100 Recurrent depression with current moderate episode (disorder) SNOMEDCT 1.0
15639000 Moderate major depression, single episode (disorder) SNOMEDCT 1.0
16264621000119109 Recurrent mild major depressive disorder co-occurrent with anxiety (disorder) SNOMEDCT 1.0
16264901000119109 Recurrent moderate major depressive disorder co-occurrent with anxiety (disorder) SNOMEDCT 1.0
16265951000119109 Mild major depressive disorder co-occurrent with anxiety single episode (disorder) SNOMEDCT 1.0
16266831000119100 Moderate major depressive disorder co-occurrent with anxiety single episode (disorder) SNOMEDCT 1.0
18818009 Moderate recurrent major depression (disorder) SNOMEDCT 1.0
191455000 Presenile dementia with depression (disorder) SNOMEDCT 1.0
191459006 Senile dementia with depression (disorder) SNOMEDCT 1.0
191601008 Single major depressive episode, mild (disorder) SNOMEDCT 1.0
191604000 Single major depressive episode, severe, with psychosis (disorder) SNOMEDCT 1.0
191610000 Recurrent major depressive episodes, mild (disorder) SNOMEDCT 1.0
191611001 Recurrent major depressive episodes, moderate (disorder) SNOMEDCT 1.0
191613003 Recurrent major depressive episodes, severe, with psychosis (disorder) SNOMEDCT 1.0
191616006 Recurrent depression (disorder) SNOMEDCT 1.0
191659001 Atypical depressive disorder (disorder) SNOMEDCT 1.0
191676002 Reactive depressive psychosis (disorder) SNOMEDCT 1.0
192049004 Prolonged depressive adjustment reaction (disorder) SNOMEDCT 1.0
192080009 Chronic depression (disorder) SNOMEDCT 1.0
19527009 Single episode of major depression in full remission (disorder) SNOMEDCT 1.0
231485007 Post-schizophrenic depression (disorder) SNOMEDCT 1.0
231499006 Endogenous depression first episode (disorder) SNOMEDCT 1.0
231500002 Masked depression (disorder) SNOMEDCT 1.0
231504006 Mixed anxiety and depressive disorder (disorder) SNOMEDCT 1.0
247803002 Seasonal affective disorder (disorder) SNOMEDCT 1.0
251000119105 Severe major depression, single episode (disorder) SNOMEDCT 1.0
25922000 Major depressive disorder, single episode with postpartum onset (disorder) SNOMEDCT 1.0
268621008 Recurrent major depressive episodes (disorder) SNOMEDCT 1.0
274948002 Endogenous depression - recurrent (disorder) SNOMEDCT 1.0
28475009 Severe recurrent major depression with psychotic features (disorder) SNOMEDCT 1.0
300706003 Endogenous depression (disorder) SNOMEDCT 1.0
310495003 Mild depression (disorder) SNOMEDCT 1.0
310496002 Moderate depression (disorder) SNOMEDCT 1.0
310497006 Severe depression (disorder) SNOMEDCT 1.0
35489007 Depressive disorder (disorder) SNOMEDCT 1.0
357705009 Cotard's syndrome (disorder) SNOMEDCT 1.0
36474008 Severe recurrent major depression without psychotic features (disorder) SNOMEDCT 1.0
36923009 Major depression, single episode (disorder) SNOMEDCT 1.0
370143000 Major depressive disorder (disorder) SNOMEDCT 1.0
397701000000102 [X]Severe depressive episode without psychotic symptoms (disorder) SNOMEDCT 1.0
397711000000100 [X]Severe depressive episode with psychotic symptoms (disorder) SNOMEDCT 1.0
40379007 Mild recurrent major depression (disorder) SNOMEDCT 1.0
40568001 Recurrent brief depressive disorder (disorder) SNOMEDCT 1.0
430421000000104 [X]Mild depressive episode (disorder) SNOMEDCT 1.0
465441000000108 [X]Moderate depressive episode (disorder) SNOMEDCT 1.0
698957003 Depressive disorder in remission (disorder) SNOMEDCT 1.0
70747007 Major depression single episode, in partial remission (disorder) SNOMEDCT 1.0
720453001 Moderately severe major depression single episode (disorder) SNOMEDCT 1.0
73867007 Severe major depression with psychotic features (disorder) SNOMEDCT 1.0
75084000 Severe major depression without psychotic features (disorder) SNOMEDCT 1.0
755321000000106 Single major depressive episode, severe, with psychosis, psychosis in remission (disorder) SNOMEDCT 1.0
755331000000108 Recurrent major depressive episodes, severe, with psychosis, psychosis in remission (disorder) SNOMEDCT 1.0
76441001 Severe major depression, single episode, without psychotic features (disorder) SNOMEDCT 1.0
764611000000100 Recurrent major depressive episodes, severe (disorder) SNOMEDCT 1.0
764691000000109 Recurrent major depressive episodes, in partial remission (disorder) SNOMEDCT 1.0
765176007 Psychosis and severe depression co-occurrent and due to bipolar affective disorder (disorder) SNOMEDCT 1.0
78667006 Dysthymia (disorder) SNOMEDCT 1.0
79298009 Mild major depression, single episode (disorder) SNOMEDCT 1.0
832007 Moderate major depression (disorder) SNOMEDCT 1.0
83458005 Agitated depression (disorder) SNOMEDCT 1.0
84760002 Schizoaffective disorder, depressive type (disorder) SNOMEDCT 1.0
87414006 Reactive depression (situational) (disorder) SNOMEDCT 1.0
87512008 Mild major depression (disorder) SNOMEDCT 1.0

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH1005/version/2183/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1005/version/2183/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH1005', '2183', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH1005/version/2183/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1005/version/2183/export/codes/?format=json
CSV site_root/phenotypes/PH1005/version/2183/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH1005', '2183', api_client=client)

Version History

Version
ID
Name Owner Publish date
2183 CCU002_02 Depression ieuan.scanlon 2022-05-17 currently shown
2089 CCU002_02 Depression ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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