Phenotypes > CCU002_02 Deep vein thrombosis (DVT)

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CCU002_02 Deep vein thrombosis (DVT)

CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow

ID
PH1007
Version ID
2185
Type
Disease or Syndrome
Data Sources
GPES Data for Pandemic Planning and Research (COVID-19) , Hospital Episode Statistics Admitted Patient Care , Civil Registration - Deaths , Trusted Research Environments for CVD-COVID-UK / COVID-IMPACT , Secondary Uses Services Payment By Results
Valid event data range
08/12/2020 - 18/03/2021
Sex
♀  Female ♂  Male
Agreement Date
2021-08-23
Coding system
ICD10 codes SNOMED CT codes
Collections
BHF Data Science Centre Phenotype Library
Tags
No tags

Definition

Code type is set to 1 for incident events, and 0 for prevalent events.

Publications

  • Association of COVID-19 vaccines ChAdOx1 and BNT162b2 with major venous, arterial, and thrombocytopenic events: whole population cohort study in 46 million adults in England CVD-COVID-UK consortium, William N Whiteley, Samantha Ip, Jennifer A Cooper, Thomas Bolton, Spencer Keene, Venexia Walker, Rachel Denholm, Ashley Akbari, Efosa Omigie, Sam Hollings, Emanuele Di Angelantonio, Spiros Denaxas, Angela Wood, Jonathan A C Sterne, Cathie Sudlow medRxiv 2021.08.18.21262222; doi: https://doi.org/10.1

Clinical Code List

Expand All  /  Collapse All
Rows: 11
Code Description terminology code_type
I80.1 Phlebitis and thrombophlebitis of femoral vein ICD10 1.0
I80.2 Phlebitis and thrombophlebitis of other deep vessels of lower extremities ICD10 1.0
I81 Portal vein thrombosis ICD10 1.0
I82.0 Budd-Chiari syndrome ICD10 1.0
I82.2 Embolism and thrombosis of vena cava ICD10 1.0
I82.3 Embolism and thrombosis of renal vein ICD10 1.0
I82.8 Embolism and thrombosis of other specified veins ICD10 1.0
I82.9 Embolism and thrombosis of unspecified vein ICD10 1.0
O08.2 Embolism following abortion and ectopic and molar pregnancy ICD10 1.0
O22.3 Deep phlebothrombosis in pregnancy ICD10 1.0
O87.1 Deep phlebothrombosis in the puerperium ICD10 1.0
Rows: 3
Code Description terminology code_type
G08 Intracranial and intraspinal phlebitis and thrombophlebitis ICD10 1.0
I63.6 Cerebral infarction due to cerebral venous thrombosis,nonpyogenic ICD10 1.0
I67.6 Nonpyogenic thrombosis of intracranial venous system ICD10 1.0
Rows: 1
Code Description terminology code_type
195230003 Cerebral infarction due to cerebral venous thrombosis, non-pyogenic SNOMEDCT 1.0

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH1007/version/2185/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1007/version/2185/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH1007', '2185', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH1007/version/2185/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH1007/version/2185/export/codes/?format=json
CSV site_root/phenotypes/PH1007/version/2185/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH1007', '2185', api_client=client)

Version History

Version
ID		 Name Owner Publish date
2185 CCU002_02 Deep vein thrombosis (DVT) ieuan.scanlon 2022-05-17 currently shown
2093 CCU002_02 Deep vein thrombosis (DVT) ieuan.scanlon 2022-05-09

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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