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Anorectal fistula

Kuan V, Denaxas S, Gonzalez-Izquierdo A, Direk K, Bhatti O, Husain S, Sutaria S, Hingorani M, Nitsch D, Parisinos C, Lumbers T, Mathur R, Sofat R, Casas JP, Wong I, Hemingway H, Hingorani A

Type
Disease or Syndrome
ID
PH101
Version ID
202
Valid event data range
01/01/1999 - 01/07/2016
Sex
Female, Male
Agreement Date
2019-05-20
Coding system
Read codes v2 ICD10 codes OPCS4 codes Med codes
Tags /Collections
CALIBER Phenotype Library

Definition

At the specified date, a patient is defined as having had 'Anorectal fistula' IF they meet the criteria for any of the following on or before the specified date. The earliest date on which the individual meets any of the following criteria on or before the specified date is defined as the first event date:

Primary care

  1. 'Anorectal fistula' diagnosis or history of diagnosis or procedure during a consultation

OR Secondary care

  1. ALL diagnoses of 'Anorectal fistula' or history of diagnosis during a hospitalization OR Secondary care (OPCS4)

  2. ALL procedures for 'Anorectal fistula' during a hospitalization

Implementation


Publications

  • Kuan V., Denaxas S., Gonzalez-Izquierdo A. et al. A chronological map of 308 physical and mental health conditions from 4 million individuals in the National Health Service. The Lancet Digital Health - DOI 10.1016/S2589-7500(19)30012-3

Clinical Code List

Rows: 18
Code Description Disease Medcode Category
7729700.0 Closure of rectal fistula Anorectal fistula 20885.0 Procedure for Anorectal fistula
7738.11 Anal fistula operations Anorectal fistula 18201.0 Procedure for Anorectal fistula
7738000.0 Laying open of low anal fistula Anorectal fistula 4994.0 Procedure for Anorectal fistula
7738100.0 Laying open of high anal fistula Anorectal fistula 20959.0 Procedure for Anorectal fistula
7738200.0 Laying open of anal fistula NEC Anorectal fistula 2406.0 Procedure for Anorectal fistula
7738300.0 Insertion seton in high anal fistula+part lay open track HFQ Anorectal fistula 19419.0 Procedure for Anorectal fistula
7738400.0 Fistulography of anal fistula Anorectal fistula 18188.0 Procedure for Anorectal fistula
7738600.0 Excision of fistula in ano Anorectal fistula 7140.0 Procedure for Anorectal fistula
7738611.0 Excision of anal fistula Anorectal fistula 4791.0 Procedure for Anorectal fistula
7738900.0 Repair of anal fistula using plug Anorectal fistula 97573.0 Procedure for Anorectal fistula
J53..00 Anal fissure and fistula Anorectal fistula 1979.0 Diagnosis of Anorectal fistula
J531.00 Fistula-in-ano Anorectal fistula 598.0 Diagnosis of Anorectal fistula
J531000 Sub-mucosal anal fistula Anorectal fistula 56271.0 Diagnosis of Anorectal fistula
J531100 Inter-muscular anal fistula Anorectal fistula 59127.0 Diagnosis of Anorectal fistula
J531200 Ano-rectal fistula Anorectal fistula 19952.0 Diagnosis of Anorectal fistula
J531300 Rectal fistula Anorectal fistula 15202.0 Diagnosis of Anorectal fistula
J531z00 Fistula-in-ano NOS Anorectal fistula 37729.0 Diagnosis of Anorectal fistula
J53z.00 Anal fissure and fistula NOS Anorectal fistula 15210.0 Diagnosis of Anorectal fistula
Rows: 18
Code Description Disease ReadcodeDescr Readcode
15202.0 Diagnosis of Anorectal fistula Anorectal fistula Rectal fistula J531300
15210.0 Diagnosis of Anorectal fistula Anorectal fistula Anal fissure and fistula NOS J53z.00
18188.0 Procedure for Anorectal fistula Anorectal fistula Fistulography of anal fistula 7738400.0
18201.0 Procedure for Anorectal fistula Anorectal fistula Anal fistula operations 7738.11
19419.0 Procedure for Anorectal fistula Anorectal fistula Insertion seton in high anal fistula+part lay open track HFQ 7738300.0
1979.0 Diagnosis of Anorectal fistula Anorectal fistula Anal fissure and fistula J53..00
19952.0 Diagnosis of Anorectal fistula Anorectal fistula Ano-rectal fistula J531200
20885.0 Procedure for Anorectal fistula Anorectal fistula Closure of rectal fistula 7729700.0
20959.0 Procedure for Anorectal fistula Anorectal fistula Laying open of high anal fistula 7738100.0
2406.0 Procedure for Anorectal fistula Anorectal fistula Laying open of anal fistula NEC 7738200.0
37729.0 Diagnosis of Anorectal fistula Anorectal fistula Fistula-in-ano NOS J531z00
4791.0 Procedure for Anorectal fistula Anorectal fistula Excision of anal fistula 7738611.0
4994.0 Procedure for Anorectal fistula Anorectal fistula Laying open of low anal fistula 7738000.0
56271.0 Diagnosis of Anorectal fistula Anorectal fistula Sub-mucosal anal fistula J531000
59127.0 Diagnosis of Anorectal fistula Anorectal fistula Inter-muscular anal fistula J531100
598.0 Diagnosis of Anorectal fistula Anorectal fistula Fistula-in-ano J531.00
7140.0 Procedure for Anorectal fistula Anorectal fistula Excision of fistula in ano 7738600.0
97573.0 Procedure for Anorectal fistula Anorectal fistula Repair of anal fistula using plug 7738900.0
Rows: 3
Code Description Disease Category
K60.3 Anal fistula Anorectal fistula Diagnosis of Anorectal fistula
K60.4 Rectal fistula Anorectal fistula Diagnosis of Anorectal fistula
K60.5 Anorectal fistula Anorectal fistula Diagnosis of Anorectal fistula
Rows: 7
Code Description Disease Category
H55.1 Laying open of low anal fistula Anorectal fistula Procedure for Anorectal fistula
H55.2 Laying open of high anal fistula Anorectal fistula Procedure for Anorectal fistula
H55.3 Laying open of anal fistula NEC Anorectal fistula Procedure for Anorectal fistula
H55.4 Insertion of seton into high anal fistula and partial laying open of track HFQ Anorectal fistula Procedure for Anorectal fistula
H55.5 Fistulography of anal fistula Anorectal fistula Procedure for Anorectal fistula
H55.6 Probing of perineal fistula Anorectal fistula Procedure for Anorectal fistula
H55.7 Repair of anal fistula using plug Anorectal fistula Procedure for Anorectal fistula

API

To Export Phenotype Details:

Format API
XML site_root/api/v1/public/phenotypes/PH101/version/202/detail/?format=xml
JSON site_root/api/v1/public/phenotypes/PH101/version/202/detail/?format=json
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get details of phenotype

details = get_phenotype_detail_by_version('PH101', '202', api_client=client)

To Export Phenotype Code List:

Format API
XML site_root/api/v1/public/phenotypes/PH101/version/202/export/codes/?format=xml
JSON site_root/api/v1/public/phenotypes/PH101/version/202/export/codes/?format=json
CSV site_root/phenotypes/PH101/version/202/export/codes/
R Package

# Download here

library(ConceptLibraryClient)


# Connect to API

client = connect_to_API(public=TRUE)


# Get codelists of phenotype

codelists = get_phenotype_code_list('PH101', '202', api_client=client)

Version History

Version
ID
Name Owner Publish date
202 Anorectal fistula ieuan.scanlon 2021-10-06 currently shown

Export - export all codes into a csv file/JSON/XML for the current phenotype version.

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